Wall clock time and date at job start Mon Mar 30 2020 03:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47231 * 2 1 4 4 C 1.50697 * 109.47121 * 186.27089 * 3 2 1 5 5 N 1.27954 * 120.00069 * 234.99868 * 4 3 2 6 6 Si 1.86797 * 120.00299 * 55.00062 * 4 3 2 7 7 H 1.48502 * 109.47136 * 59.99811 * 6 4 3 8 8 H 1.48496 * 109.47351 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47015 * 300.00198 * 6 4 3 10 10 S 1.81403 * 109.47174 * 66.27145 * 3 2 1 11 11 O 1.52201 * 108.33150 * 182.00050 * 10 3 2 12 12 O 1.42105 * 114.64689 * 303.10419 * 10 3 2 13 13 N 1.65596 * 108.33193 * 64.20929 * 10 3 2 14 14 N 1.23726 * 122.68181 * 352.34619 * 13 10 3 15 15 C 1.47288 * 107.53170 * 179.97438 * 14 13 10 16 16 H 1.09001 * 110.71136 * 118.62445 * 15 14 13 17 17 N 1.46901 * 110.70892 * 241.68886 * 15 14 13 18 18 C 1.51841 * 103.15063 * 0.15337 * 15 14 13 19 19 C 1.33480 * 103.92306 * 359.91262 * 18 15 14 20 20 H 1.09002 * 109.47327 * 292.74729 * 1 2 3 21 21 H 1.08998 * 109.47470 * 52.74450 * 1 2 3 22 22 H 1.09000 * 109.47454 * 172.74617 * 1 2 3 23 23 H 1.08999 * 109.47233 * 239.99762 * 2 1 3 24 24 H 1.09001 * 109.47385 * 119.99983 * 2 1 3 25 25 H 1.08995 * 109.47217 * 306.26902 * 3 2 1 26 26 H 0.96995 * 119.99867 * 180.02562 * 5 4 3 27 27 H 0.96692 * 114.00056 * 304.93180 * 11 10 3 28 28 H 1.00895 * 111.00378 * 296.18328 * 17 15 14 29 29 H 1.00907 * 110.99942 * 60.13717 * 17 15 14 30 30 H 1.07992 * 128.04067 * 179.88859 * 18 15 14 31 31 H 1.08004 * 124.59140 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5389 1.4453 -0.1552 5 7 4.2700 2.0486 0.7043 6 14 4.3298 0.5681 -1.6024 7 1 3.8367 1.1622 -2.8709 8 1 5.8052 0.7177 -1.5257 9 1 3.9761 -0.8736 -1.5606 10 16 1.5927 2.2420 1.5657 11 8 2.0675 3.6873 1.5179 12 8 0.2018 2.2379 1.8571 13 7 2.3844 1.4623 2.7935 14 7 3.0283 0.4205 2.6178 15 6 3.5886 0.0203 3.9198 16 1 3.2083 -0.9563 4.2193 17 7 5.0568 0.0118 3.8730 18 6 3.0875 1.1030 4.8590 19 6 2.3771 1.9105 4.0685 20 1 -0.3634 0.3974 0.9477 21 1 -0.3634 0.6221 -0.8179 22 1 -0.3634 -1.0194 -0.1298 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5880 1.9877 -0.8285 26 1 5.2348 2.0507 0.6042 27 1 3.0097 3.7855 1.3240 28 1 5.3939 -0.6798 3.2202 29 1 5.4168 0.9272 3.6478 30 1 3.2644 1.1976 5.9202 31 1 1.8655 2.8010 4.4025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725581563.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:05 Heat of formation + Delta-G solvation = 73.067153 kcal Electronic energy + Delta-G solvation = -17949.180951 eV Core-core repulsion = 15091.365624 eV Total energy + Delta-G solvation = -2857.815327 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.28155 -38.07798 -37.60971 -36.60164 -35.29458 -34.52761 -32.46522 -29.37714 -28.57195 -23.32906 -22.99004 -22.68620 -21.37081 -20.73563 -19.93868 -18.20172 -17.78972 -17.24668 -16.71634 -16.38234 -15.75904 -15.72474 -15.41243 -15.05656 -14.61567 -14.35070 -14.12493 -14.01864 -13.15360 -13.06334 -12.99074 -12.72696 -12.68747 -12.46521 -12.33047 -12.22179 -11.88825 -11.39017 -10.94416 -10.73190 -10.27350 -10.03335 -6.94328 -1.16330 0.63442 0.93065 1.05012 1.30088 1.43717 1.63433 1.79276 2.02943 2.97069 3.12258 3.28015 3.32958 3.57975 3.93550 4.08940 4.15124 4.26607 4.38168 4.45860 4.54917 4.73105 4.90992 4.99192 5.05602 5.19146 5.36437 5.56766 5.65704 5.89602 6.05334 6.58327 6.62375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.092 4.092 3 C -0.526 4.526 4 C 0.074 3.926 5 N -0.686 5.686 6 Si 0.927 3.073 7 H -0.237 1.237 8 H -0.249 1.249 9 H -0.230 1.230 10 S 1.929 4.071 11 O -0.898 6.898 12 O -0.904 6.904 13 N -0.351 5.351 14 N -0.218 5.218 15 C 0.177 3.823 16 H 0.157 0.843 17 N -0.807 5.807 18 C -0.135 4.135 19 C -0.060 4.060 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.347 0.653 27 H 0.437 0.563 28 H 0.356 0.644 29 H 0.350 0.650 30 H 0.178 0.822 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 -2.387 0.923 6.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.131 4.131 3 C -0.631 4.631 4 C -0.173 4.173 5 N -0.303 5.303 6 Si 0.743 3.257 7 H -0.160 1.160 8 H -0.172 1.172 9 H -0.152 1.152 10 S 2.016 3.984 11 O -0.752 6.752 12 O -0.890 6.890 13 N -0.260 5.260 14 N -0.122 5.122 15 C -0.025 4.025 16 H 0.174 0.826 17 N -0.341 5.341 18 C -0.168 4.168 19 C -0.182 4.182 20 H 0.095 0.905 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.136 0.864 26 H 0.165 0.835 27 H 0.301 0.699 28 H 0.171 0.829 29 H 0.163 0.837 30 H 0.195 0.805 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.521 -2.111 1.215 5.135 hybrid contribution 0.492 0.535 -1.324 1.511 sum 5.013 -1.576 -0.109 5.256 Atomic orbital electron populations 1.22114 0.95084 1.02434 1.03848 1.21139 0.96032 0.92375 1.03582 1.28627 0.96723 1.08937 1.28764 1.29480 0.96728 0.92279 0.98832 1.67725 1.13303 1.20095 1.29219 0.85778 0.79303 0.82298 0.78293 1.16017 1.17244 1.15243 1.62611 0.85923 0.72673 0.77151 1.85096 1.37265 1.63468 1.89416 1.93093 1.34696 1.81768 1.79424 1.62606 1.37278 1.10619 1.15517 1.78598 1.15258 0.93252 1.25082 1.23861 0.90344 1.00935 0.87344 0.82603 1.59081 1.03530 1.12697 1.58770 1.25193 0.95082 0.94637 1.01840 1.23785 1.03092 1.03019 0.88282 0.90524 0.92611 0.91964 0.91684 0.89662 0.86382 0.83521 0.69860 0.82925 0.83706 0.80473 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.32 9.51 37.16 0.35 0.03 16 2 C -0.09 -0.02 5.04 -26.73 -0.13 -0.15 16 3 C -0.53 -0.15 2.34 -27.88 -0.07 -0.22 16 4 C 0.07 -0.12 4.66 -13.90 -0.06 -0.19 16 5 N -0.69 1.89 9.52 56.23 0.54 2.43 16 6 Si 0.93 -1.68 27.79 -169.99 -4.72 -6.40 16 7 H -0.24 0.14 7.11 56.52 0.40 0.54 16 8 H -0.25 0.42 7.11 56.52 0.40 0.83 16 9 H -0.23 0.30 6.92 56.52 0.39 0.69 16 10 S 1.93 4.59 3.88 -107.50 -0.42 4.17 16 11 O -0.90 -2.49 13.55 -58.55 -0.79 -3.28 16 12 O -0.90 -6.78 15.85 -58.55 -0.93 -7.71 16 13 N -0.35 0.13 3.21 30.14 0.10 0.22 16 14 N -0.22 0.37 8.43 -7.47 -0.06 0.30 16 15 C 0.18 -0.52 5.00 -126.93 -0.64 -1.16 16 16 H 0.16 -0.59 8.14 -51.93 -0.42 -1.02 16 17 N -0.81 2.94 9.56 -7.55 -0.07 2.87 16 18 C -0.13 0.41 11.06 -35.41 -0.39 0.02 16 19 C -0.06 0.08 10.98 -17.76 -0.20 -0.11 16 20 H 0.08 0.30 5.81 -51.93 -0.30 0.00 16 21 H 0.05 0.10 8.12 -51.93 -0.42 -0.32 16 22 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 23 H 0.06 -0.06 6.23 -51.93 -0.32 -0.38 16 24 H 0.08 -0.04 6.20 -51.93 -0.32 -0.36 16 25 H 0.12 -0.02 8.12 -51.93 -0.42 -0.44 16 26 H 0.35 -1.55 8.23 -40.82 -0.34 -1.89 16 27 H 0.44 -0.28 7.13 67.38 0.48 0.20 16 28 H 0.36 -1.63 9.08 -39.29 -0.36 -1.98 16 29 H 0.35 -1.37 8.99 -39.29 -0.35 -1.73 16 30 H 0.18 -0.89 8.06 -52.49 -0.42 -1.31 16 31 H 0.18 -0.39 8.06 -52.48 -0.42 -0.82 16 LS Contribution 261.84 15.07 3.95 3.95 Total: 0.00 -7.19 261.84 -6.41 -13.59 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: -2.85 Total: -8.37 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.13 Total: -1.78 kcal Atomic # 7 Polarization: 5.33 SS G_CDS: 0.50 Total: 5.83 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.72 Total: -10.99 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: -4.72 Total: -6.40 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -0.42 Total: 4.17 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -7.19 -6.41 -13.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725581563.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.660 kcal (2) G-P(sol) polarization free energy of solvation -7.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds