Wall clock time and date at job start Mon Mar 30 2020 03:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47231 * 2 1 4 4 C 1.50697 * 109.47121 * 186.27089 * 3 2 1 5 5 N 1.27954 * 120.00069 * 234.99868 * 4 3 2 6 6 Si 1.86797 * 120.00299 * 55.00062 * 4 3 2 7 7 H 1.48502 * 109.47136 * 59.99811 * 6 4 3 8 8 H 1.48496 * 109.47351 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47015 * 300.00198 * 6 4 3 10 10 S 1.81403 * 109.47174 * 66.27145 * 3 2 1 11 11 O 1.52201 * 108.33150 * 182.00050 * 10 3 2 12 12 O 1.42105 * 114.64689 * 303.10419 * 10 3 2 13 13 N 1.65596 * 108.33193 * 64.20929 * 10 3 2 14 14 N 1.23726 * 122.68181 * 352.34619 * 13 10 3 15 15 C 1.47288 * 107.53170 * 179.97438 * 14 13 10 16 16 H 1.09001 * 110.71136 * 118.62445 * 15 14 13 17 17 N 1.46901 * 110.70892 * 241.68886 * 15 14 13 18 18 C 1.51841 * 103.15063 * 0.15337 * 15 14 13 19 19 C 1.33480 * 103.92306 * 359.91262 * 18 15 14 20 20 H 1.09002 * 109.47327 * 292.74729 * 1 2 3 21 21 H 1.08998 * 109.47470 * 52.74450 * 1 2 3 22 22 H 1.09000 * 109.47454 * 172.74617 * 1 2 3 23 23 H 1.08999 * 109.47233 * 239.99762 * 2 1 3 24 24 H 1.09001 * 109.47385 * 119.99983 * 2 1 3 25 25 H 1.08995 * 109.47217 * 306.26902 * 3 2 1 26 26 H 0.96995 * 119.99867 * 180.02562 * 5 4 3 27 27 H 0.96692 * 114.00056 * 304.93180 * 11 10 3 28 28 H 1.00895 * 111.00378 * 296.18328 * 17 15 14 29 29 H 1.00907 * 110.99942 * 60.13717 * 17 15 14 30 30 H 1.07992 * 128.04067 * 179.88859 * 18 15 14 31 31 H 1.08004 * 124.59140 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5389 1.4453 -0.1552 5 7 4.2700 2.0486 0.7043 6 14 4.3298 0.5681 -1.6024 7 1 3.8367 1.1622 -2.8709 8 1 5.8052 0.7177 -1.5257 9 1 3.9761 -0.8736 -1.5606 10 16 1.5927 2.2420 1.5657 11 8 2.0675 3.6873 1.5179 12 8 0.2018 2.2379 1.8571 13 7 2.3844 1.4623 2.7935 14 7 3.0283 0.4205 2.6178 15 6 3.5886 0.0203 3.9198 16 1 3.2083 -0.9563 4.2193 17 7 5.0568 0.0118 3.8730 18 6 3.0875 1.1030 4.8590 19 6 2.3771 1.9105 4.0685 20 1 -0.3634 0.3974 0.9477 21 1 -0.3634 0.6221 -0.8179 22 1 -0.3634 -1.0194 -0.1298 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5880 1.9877 -0.8285 26 1 5.2348 2.0507 0.6042 27 1 3.0097 3.7855 1.3240 28 1 5.3939 -0.6798 3.2202 29 1 5.4168 0.9272 3.6478 30 1 3.2644 1.1976 5.9202 31 1 1.8655 2.8010 4.4025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725581563.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:04 Heat of formation + Delta-G solvation = 68.425208 kcal Electronic energy + Delta-G solvation = -17949.382241 eV Core-core repulsion = 15091.365624 eV Total energy + Delta-G solvation = -2858.016617 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.34060 -38.00402 -37.50913 -36.66668 -35.17795 -34.45852 -32.43263 -29.26145 -28.53324 -23.22097 -22.98115 -22.59417 -21.21623 -20.70177 -19.91192 -18.06482 -17.73033 -17.18419 -16.62881 -16.28800 -15.72216 -15.66954 -15.32016 -14.98728 -14.50485 -14.29682 -14.06078 -13.97623 -13.16571 -13.06492 -12.95712 -12.72818 -12.66764 -12.52350 -12.33220 -12.14573 -11.85768 -11.24860 -10.91163 -10.64348 -10.12689 -9.87482 -6.92784 -1.03120 0.79876 1.06362 1.14485 1.44918 1.48037 1.78293 1.93064 2.11425 3.00625 3.20852 3.37201 3.50162 3.70134 4.01217 4.13632 4.27136 4.31443 4.45076 4.52740 4.64857 4.74258 4.90738 5.08429 5.11970 5.16275 5.35419 5.44491 5.85092 6.05582 6.30103 6.55576 6.90259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.534 4.534 4 C 0.076 3.924 5 N -0.679 5.679 6 Si 0.952 3.048 7 H -0.261 1.261 8 H -0.244 1.244 9 H -0.234 1.234 10 S 1.865 4.135 11 O -0.911 6.911 12 O -0.975 6.975 13 N -0.322 5.322 14 N -0.173 5.173 15 C 0.157 3.843 16 H 0.184 0.816 17 N -0.795 5.795 18 C -0.089 4.089 19 C -0.099 4.099 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.358 0.642 27 H 0.442 0.558 28 H 0.367 0.633 29 H 0.356 0.644 30 H 0.208 0.792 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.046 -3.900 2.686 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.128 4.128 3 C -0.639 4.639 4 C -0.172 4.172 5 N -0.297 5.297 6 Si 0.769 3.231 7 H -0.186 1.186 8 H -0.167 1.167 9 H -0.157 1.157 10 S 1.953 4.047 11 O -0.769 6.769 12 O -0.962 6.962 13 N -0.231 5.231 14 N -0.074 5.074 15 C -0.045 4.045 16 H 0.200 0.800 17 N -0.331 5.331 18 C -0.121 4.121 19 C -0.222 4.222 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.177 0.823 27 H 0.308 0.692 28 H 0.183 0.817 29 H 0.170 0.830 30 H 0.225 0.775 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.051 -3.663 2.995 8.491 hybrid contribution -0.070 0.764 -1.538 1.718 sum 6.981 -2.900 1.457 7.698 Atomic orbital electron populations 1.22116 0.96817 1.02522 1.02243 1.21120 0.94562 0.92963 1.04175 1.28553 0.97837 1.08453 1.29058 1.29339 0.95833 0.92885 0.99152 1.67675 1.13918 1.19026 1.29110 0.85444 0.79120 0.81529 0.76994 1.18550 1.16666 1.15698 1.69986 0.84182 0.72676 0.77808 1.85060 1.37676 1.64567 1.89548 1.92876 1.39878 1.82786 1.80659 1.63786 1.32432 1.09896 1.16941 1.78659 1.09270 0.92855 1.26649 1.24320 0.91518 1.02151 0.86477 0.79977 1.59105 1.01452 1.13479 1.59050 1.25717 0.91648 0.91857 1.02873 1.24146 1.05140 1.04609 0.88310 0.92873 0.93437 0.90958 0.90710 0.89123 0.87629 0.82295 0.69238 0.81705 0.83049 0.77548 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 9.51 71.98 0.68 -0.49 16 2 C -0.09 -0.18 5.04 30.59 0.15 -0.03 16 3 C -0.53 -1.54 2.34 29.85 0.07 -1.47 16 4 C 0.08 -0.20 4.66 88.67 0.41 0.21 16 5 N -0.68 3.86 9.52 24.11 0.23 4.09 16 6 Si 0.95 -3.29 27.79 68.60 1.91 -1.38 16 7 H -0.26 -0.09 7.11 99.48 0.71 0.61 16 8 H -0.24 1.09 7.11 99.48 0.71 1.80 16 9 H -0.23 0.69 6.92 99.48 0.69 1.38 16 10 S 1.87 14.01 3.88 -56.49 -0.22 13.79 16 11 O -0.91 -7.81 13.55 -126.68 -1.72 -9.53 16 12 O -0.97 -19.05 15.85 -126.68 -2.01 -21.06 16 13 N -0.32 0.20 3.21 -58.55 -0.19 0.01 16 14 N -0.17 0.83 8.43 -177.55 -1.50 -0.66 16 15 C 0.16 -1.46 5.00 128.74 0.64 -0.82 16 16 H 0.18 -2.22 8.14 -2.39 -0.02 -2.24 16 17 N -0.80 8.87 9.56 -177.80 -1.70 7.17 16 18 C -0.09 0.83 11.06 24.97 0.28 1.11 16 19 C -0.10 0.34 10.98 83.10 0.91 1.26 16 20 H 0.05 0.63 5.81 -2.39 -0.01 0.62 16 21 H 0.05 0.35 8.12 -2.39 -0.02 0.33 16 22 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 23 H 0.07 -0.07 6.23 -2.39 -0.01 -0.08 16 24 H 0.09 -0.05 6.20 -2.39 -0.01 -0.06 16 25 H 0.11 0.39 8.12 -2.39 -0.02 0.37 16 26 H 0.36 -3.59 8.23 -92.71 -0.76 -4.35 16 27 H 0.44 0.43 7.13 -87.94 -0.63 -0.19 16 28 H 0.37 -4.80 9.08 -89.70 -0.81 -5.61 16 29 H 0.36 -4.11 8.99 -89.69 -0.81 -4.92 16 30 H 0.21 -3.02 8.06 -2.91 -0.02 -3.05 16 31 H 0.18 -0.68 8.06 -2.91 -0.02 -0.70 16 Total: 0.00 -20.59 261.84 -3.11 -23.70 By element: Atomic # 1 Polarization: -14.83 SS G_CDS: -1.08 Total: -15.91 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 3.16 Total: -0.22 kcal Atomic # 7 Polarization: 13.76 SS G_CDS: -3.16 Total: 10.60 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -3.73 Total: -30.59 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 1.91 Total: -1.38 kcal Atomic # 16 Polarization: 14.01 SS G_CDS: -0.22 Total: 13.79 kcal Total: -20.59 -3.11 -23.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725581563.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.127 kcal (2) G-P(sol) polarization free energy of solvation -20.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds