Wall clock time and date at job start Mon Mar 30 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47145 * 2 1 4 4 S 1.65599 * 120.00200 * 94.99436 * 3 2 1 5 5 O 1.52202 * 109.47001 * 300.00377 * 4 3 2 6 6 O 1.42100 * 109.46588 * 60.00304 * 4 3 2 7 7 C 1.76201 * 109.47174 * 180.02562 * 4 3 2 8 8 N 1.29055 * 125.10274 * 359.97438 * 7 4 3 9 9 C 1.46855 * 107.22046 * 180.02562 * 8 7 4 10 10 N 1.46856 * 105.97809 * 0.02562 * 9 8 7 11 11 C 1.46499 * 126.38794 * 179.73461 * 10 9 8 12 12 C 1.29053 * 107.22566 * 0.02562 * 10 9 8 13 13 C 1.50698 * 109.47287 * 239.99612 * 2 1 3 14 14 N 1.27935 * 119.99891 * 124.99870 * 13 2 1 15 15 Si 1.86806 * 120.00147 * 305.00416 * 13 2 1 16 16 H 1.48500 * 109.47237 * 89.99662 * 15 13 2 17 17 H 1.48498 * 109.46904 * 209.99889 * 15 13 2 18 18 H 1.48501 * 109.46539 * 329.99730 * 15 13 2 19 19 H 1.08991 * 109.47185 * 300.00492 * 1 2 3 20 20 H 1.09001 * 109.47036 * 60.00312 * 1 2 3 21 21 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46588 * 119.99498 * 2 1 3 23 23 H 0.97000 * 119.99603 * 275.00317 * 3 2 1 24 24 H 0.96693 * 113.99656 * 299.99373 * 5 4 3 25 25 H 1.09001 * 110.15051 * 240.87665 * 9 8 7 26 26 H 1.08997 * 110.21277 * 119.16157 * 9 8 7 27 27 H 1.09006 * 109.47025 * 90.00318 * 11 10 9 28 28 H 1.08999 * 109.47205 * 209.99936 * 11 10 9 29 29 H 1.09001 * 109.47426 * 330.00676 * 11 10 9 30 30 H 1.07999 * 125.11108 * 179.97438 * 12 10 9 31 31 H 0.97003 * 120.00266 * 180.02562 * 14 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 2.4121 2.1203 1.4287 5 8 1.1879 2.1631 2.3320 6 8 3.4487 1.3897 2.0698 7 6 2.9625 3.7631 1.1079 8 7 3.0450 4.3032 -0.0613 9 6 3.5459 5.6709 0.1259 10 7 3.7390 5.8363 1.5723 11 6 4.2324 7.0368 2.2516 12 6 3.3989 4.7247 2.1328 13 6 2.0324 -0.7105 -1.2304 14 7 2.8448 -0.1201 -2.0230 15 14 1.4689 -2.4531 -1.5983 16 1 0.2383 -2.4105 -2.4284 17 1 2.5381 -3.1740 -2.3347 18 1 1.1824 -3.1599 -0.3241 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 0.8900 23 1 2.1110 1.8628 -0.8369 24 1 0.4394 2.6471 1.9572 25 1 2.8150 6.3919 -0.2405 26 1 4.4939 5.7996 -0.3962 27 1 3.3910 7.6801 2.5093 28 1 4.7611 6.7488 3.1602 29 1 4.9120 7.5749 1.5908 30 1 3.4294 4.5296 3.1946 31 1 3.1679 -0.5773 -2.8152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725587538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:38 Heat of formation + Delta-G solvation = 61.174663 kcal Electronic energy + Delta-G solvation = -16751.279350 eV Core-core repulsion = 13892.948326 eV Total energy + Delta-G solvation = -2858.331024 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94513 -38.02923 -37.49795 -36.06903 -35.10178 -34.15350 -30.24615 -29.92083 -28.64192 -24.88783 -23.03733 -22.18305 -20.78508 -20.32502 -18.76644 -18.61023 -17.35562 -17.31347 -16.76915 -16.11729 -15.74482 -15.41311 -14.99224 -14.71155 -14.59222 -14.41604 -14.01764 -13.85768 -13.75332 -13.32490 -12.79757 -12.52128 -12.34912 -12.15728 -12.07671 -11.80230 -11.72185 -11.28567 -11.24855 -10.80578 -9.83119 -9.43481 -5.90063 -1.07674 0.99163 1.17599 1.30073 1.43165 1.48743 1.83209 1.93376 2.29042 2.73017 3.24051 3.54830 3.66179 3.71272 3.80355 4.08103 4.13532 4.14720 4.25463 4.33437 4.51216 4.70519 4.72670 4.94039 5.01057 5.16696 5.35334 5.49969 5.62584 6.20729 6.74188 7.01455 7.17501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.172 3.828 3 N -1.060 6.060 4 S 2.108 3.892 5 O -0.917 6.917 6 O -0.947 6.947 7 C -0.344 4.344 8 N -0.469 5.469 9 C 0.192 3.808 10 N -0.505 5.505 11 C 0.071 3.929 12 C 0.170 3.830 13 C -0.015 4.015 14 N -0.614 5.614 15 Si 0.925 3.075 16 H -0.238 1.238 17 H -0.250 1.250 18 H -0.233 1.233 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.091 0.909 23 H 0.411 0.589 24 H 0.427 0.573 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.185 0.815 31 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 7.076 0.726 7.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.061 3.939 3 N -0.812 5.812 4 S 2.206 3.794 5 O -0.767 6.767 6 O -0.931 6.931 7 C -0.586 4.586 8 N -0.213 5.213 9 C -0.021 4.021 10 N -0.199 5.199 11 C -0.070 4.070 12 C -0.013 4.013 13 C -0.265 4.265 14 N -0.227 5.227 15 Si 0.741 3.259 16 H -0.161 1.161 17 H -0.173 1.173 18 H -0.155 1.155 19 H 0.089 0.911 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.245 0.755 24 H 0.288 0.712 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.202 0.798 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.052 6.242 0.690 6.607 hybrid contribution 0.416 0.427 -0.247 0.646 sum -1.636 6.669 0.443 6.881 Atomic orbital electron populations 1.22302 0.94755 1.02370 1.03395 1.20063 0.93515 0.85179 0.95183 1.56017 1.80977 1.18122 1.26132 1.51275 0.74524 0.80863 0.72711 1.85554 1.42472 1.78764 1.69864 1.93055 1.54688 1.71907 1.73438 1.39061 1.00632 1.27635 0.91292 1.74865 1.22904 1.02379 1.21123 1.24458 1.01835 0.98041 0.77804 1.46899 1.50122 1.11049 1.11873 1.22235 1.01189 0.84932 0.98619 1.25731 0.91444 0.83894 1.00226 1.30685 0.94361 1.04789 0.96697 1.68053 1.08037 1.40560 1.06035 0.85832 0.81746 0.75518 0.82826 1.16067 1.17313 1.15478 0.91104 0.91351 0.91917 0.89111 0.75526 0.71187 0.88493 0.87956 0.89386 0.88835 0.89064 0.79781 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.09 9.08 37.16 0.34 0.42 16 2 C 0.17 0.38 3.10 -69.08 -0.21 0.17 16 3 N -1.06 -2.69 5.28 -5.88 -0.03 -2.73 16 4 S 2.11 6.45 5.46 -107.50 -0.59 5.86 16 5 O -0.92 -0.98 13.41 -58.38 -0.78 -1.77 16 6 O -0.95 -8.81 18.14 -58.38 -1.06 -9.87 16 7 C -0.34 -0.47 7.48 -15.10 -0.11 -0.58 16 8 N -0.47 -0.84 11.73 -61.13 -0.72 -1.56 16 9 C 0.19 -0.22 8.46 -62.98 -0.53 -0.75 16 10 N -0.50 1.43 3.25 -183.59 -0.60 0.83 16 11 C 0.07 -0.46 11.22 59.85 0.67 0.21 16 12 C 0.17 -0.24 11.50 -15.10 -0.17 -0.42 16 13 C -0.01 -0.03 5.36 -13.90 -0.07 -0.10 16 14 N -0.61 -1.91 12.65 56.22 0.71 -1.20 16 15 Si 0.92 0.42 27.80 -169.99 -4.73 -4.30 16 16 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 17 H -0.25 -0.35 7.11 56.52 0.40 0.06 16 18 H -0.23 -0.16 7.11 56.52 0.40 0.25 16 19 H 0.07 -0.10 7.99 -51.93 -0.41 -0.51 16 20 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 21 H 0.06 -0.10 6.65 -51.93 -0.35 -0.44 16 22 H 0.09 0.27 7.99 -51.93 -0.41 -0.14 16 23 H 0.41 1.02 8.09 -34.47 -0.28 0.74 16 24 H 0.43 -1.78 9.03 67.38 0.61 -1.17 16 25 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 26 H 0.10 -0.17 8.14 -51.93 -0.42 -0.60 16 27 H 0.09 -0.67 8.14 -51.93 -0.42 -1.09 16 28 H 0.09 -0.70 8.13 -51.93 -0.42 -1.12 16 29 H 0.09 -0.67 8.14 -51.93 -0.42 -1.09 16 30 H 0.19 -0.79 8.06 -52.49 -0.42 -1.21 16 31 H 0.33 0.44 8.23 -40.82 -0.34 0.10 16 LS Contribution 280.14 15.07 4.22 4.22 Total: 0.00 -12.06 280.14 -6.60 -18.66 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: -2.94 Total: -7.10 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.10 Total: -1.05 kcal Atomic # 7 Polarization: -4.01 SS G_CDS: -0.63 Total: -4.65 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.84 Total: -11.64 kcal Atomic # 14 Polarization: 0.42 SS G_CDS: -4.73 Total: -4.30 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -0.59 Total: 5.86 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -12.06 -6.60 -18.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725587538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.837 kcal (2) G-P(sol) polarization free energy of solvation -12.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds