Wall clock time and date at job start Mon Mar 30 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47145 * 2 1 4 4 S 1.65599 * 120.00200 * 94.99436 * 3 2 1 5 5 O 1.52202 * 109.47001 * 300.00377 * 4 3 2 6 6 O 1.42100 * 109.46588 * 60.00304 * 4 3 2 7 7 C 1.76201 * 109.47174 * 180.02562 * 4 3 2 8 8 N 1.29055 * 125.10274 * 359.97438 * 7 4 3 9 9 C 1.46855 * 107.22046 * 180.02562 * 8 7 4 10 10 N 1.46856 * 105.97809 * 0.02562 * 9 8 7 11 11 C 1.46499 * 126.38794 * 179.73461 * 10 9 8 12 12 C 1.29053 * 107.22566 * 0.02562 * 10 9 8 13 13 C 1.50698 * 109.47287 * 239.99612 * 2 1 3 14 14 N 1.27935 * 119.99891 * 124.99870 * 13 2 1 15 15 Si 1.86806 * 120.00147 * 305.00416 * 13 2 1 16 16 H 1.48500 * 109.47237 * 89.99662 * 15 13 2 17 17 H 1.48498 * 109.46904 * 209.99889 * 15 13 2 18 18 H 1.48501 * 109.46539 * 329.99730 * 15 13 2 19 19 H 1.08991 * 109.47185 * 300.00492 * 1 2 3 20 20 H 1.09001 * 109.47036 * 60.00312 * 1 2 3 21 21 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46588 * 119.99498 * 2 1 3 23 23 H 0.97000 * 119.99603 * 275.00317 * 3 2 1 24 24 H 0.96693 * 113.99656 * 299.99373 * 5 4 3 25 25 H 1.09001 * 110.15051 * 240.87665 * 9 8 7 26 26 H 1.08997 * 110.21277 * 119.16157 * 9 8 7 27 27 H 1.09006 * 109.47025 * 90.00318 * 11 10 9 28 28 H 1.08999 * 109.47205 * 209.99936 * 11 10 9 29 29 H 1.09001 * 109.47426 * 330.00676 * 11 10 9 30 30 H 1.07999 * 125.11108 * 179.97438 * 12 10 9 31 31 H 0.97003 * 120.00266 * 180.02562 * 14 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 2.4121 2.1203 1.4287 5 8 1.1879 2.1631 2.3320 6 8 3.4487 1.3897 2.0698 7 6 2.9625 3.7631 1.1079 8 7 3.0450 4.3032 -0.0613 9 6 3.5459 5.6709 0.1259 10 7 3.7390 5.8363 1.5723 11 6 4.2324 7.0368 2.2516 12 6 3.3989 4.7247 2.1328 13 6 2.0324 -0.7105 -1.2304 14 7 2.8448 -0.1201 -2.0230 15 14 1.4689 -2.4531 -1.5983 16 1 0.2383 -2.4105 -2.4284 17 1 2.5381 -3.1740 -2.3347 18 1 1.1824 -3.1599 -0.3241 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 0.8900 23 1 2.1110 1.8628 -0.8369 24 1 0.4394 2.6471 1.9572 25 1 2.8150 6.3919 -0.2405 26 1 4.4939 5.7996 -0.3962 27 1 3.3910 7.6801 2.5093 28 1 4.7611 6.7488 3.1602 29 1 4.9120 7.5749 1.5908 30 1 3.4294 4.5296 3.1946 31 1 3.1679 -0.5773 -2.8152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725587538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:38 Heat of formation + Delta-G solvation = 50.639511 kcal Electronic energy + Delta-G solvation = -16751.736188 eV Core-core repulsion = 13892.948326 eV Total energy + Delta-G solvation = -2858.787863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.09563 -38.02354 -37.17096 -36.10694 -35.15041 -34.16705 -30.13649 -29.91506 -28.45104 -24.87877 -23.00081 -22.15148 -20.72193 -20.15901 -18.65837 -18.52601 -17.37472 -17.29836 -16.70499 -15.99574 -15.72551 -15.38124 -15.00331 -14.65655 -14.44197 -14.30336 -13.99243 -13.77538 -13.45861 -13.24904 -12.67572 -12.48130 -12.33157 -12.09812 -12.05905 -11.85767 -11.81086 -11.34140 -11.29159 -10.85821 -9.85722 -9.34592 -5.87720 -0.93770 0.91098 1.12261 1.30685 1.43503 1.44426 1.77011 1.88334 2.42181 2.87275 3.24977 3.66670 3.78346 3.85926 4.12120 4.18849 4.21492 4.31215 4.40361 4.57331 4.66705 4.69195 4.80563 4.89848 5.02987 5.14423 5.45220 5.58037 5.65402 6.51641 6.72979 7.01474 7.19921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 N -1.056 6.056 4 S 2.035 3.965 5 O -0.937 6.937 6 O -1.033 7.033 7 C -0.344 4.344 8 N -0.466 5.466 9 C 0.162 3.838 10 N -0.471 5.471 11 C 0.053 3.947 12 C 0.210 3.790 13 C -0.023 4.023 14 N -0.642 5.642 15 Si 0.963 3.037 16 H -0.230 1.230 17 H -0.264 1.264 18 H -0.238 1.238 19 H 0.076 0.924 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.402 0.598 24 H 0.435 0.565 25 H 0.135 0.865 26 H 0.128 0.872 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.222 0.778 31 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 10.875 0.898 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 N -0.807 5.807 4 S 2.125 3.875 5 O -0.789 6.789 6 O -1.017 7.017 7 C -0.589 4.589 8 N -0.204 5.204 9 C -0.052 4.052 10 N -0.156 5.156 11 C -0.086 4.086 12 C 0.024 3.976 13 C -0.272 4.272 14 N -0.255 5.255 15 Si 0.779 3.221 16 H -0.152 1.152 17 H -0.188 1.188 18 H -0.160 1.160 19 H 0.095 0.905 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.233 0.767 24 H 0.298 0.702 25 H 0.152 0.848 26 H 0.145 0.855 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.238 0.762 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.660 10.265 0.836 10.431 hybrid contribution 0.651 0.100 -0.266 0.711 sum -1.009 10.365 0.570 10.429 Atomic orbital electron populations 1.22269 0.93081 1.02966 1.03959 1.20186 0.95040 0.86243 0.93992 1.56472 1.80652 1.17306 1.26277 1.61134 0.73551 0.80674 0.72124 1.85463 1.43423 1.78853 1.71172 1.92804 1.58761 1.74361 1.75788 1.40356 0.97840 1.29724 0.90959 1.74872 1.19325 1.03672 1.22530 1.25013 1.03759 0.97745 0.78679 1.47623 1.44417 1.11584 1.11988 1.22833 1.02851 0.83337 0.99542 1.26751 0.85428 0.83140 1.02251 1.31146 0.93663 1.05918 0.96430 1.68081 1.09075 1.41582 1.06781 0.85308 0.81144 0.73549 0.82124 1.15233 1.18793 1.15989 0.90527 0.90751 0.91147 0.91498 0.76704 0.70167 0.84775 0.85454 0.86773 0.86762 0.87175 0.76197 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.31 9.08 71.98 0.65 0.35 16 2 C 0.16 1.36 3.10 44.25 0.14 1.50 16 3 N -1.06 -9.76 5.28 -172.52 -0.91 -10.67 16 4 S 2.04 20.32 5.46 -56.49 -0.31 20.01 16 5 O -0.94 -5.71 13.41 -126.85 -1.70 -7.41 16 6 O -1.03 -24.88 18.14 -126.85 -2.30 -27.18 16 7 C -0.34 -0.96 7.48 87.44 0.65 -0.31 16 8 N -0.47 -1.17 11.73 -347.30 -4.07 -5.25 16 9 C 0.16 -1.02 8.46 170.69 1.44 0.42 16 10 N -0.47 4.90 3.25 -734.75 -2.39 2.51 16 11 C 0.05 -0.99 11.22 127.77 1.43 0.44 16 12 C 0.21 -1.21 11.50 87.44 1.01 -0.21 16 13 C -0.02 -0.17 5.36 88.68 0.48 0.31 16 14 N -0.64 -6.10 12.65 24.11 0.30 -5.80 16 15 Si 0.96 2.76 27.80 68.60 1.91 4.67 16 16 H -0.23 -0.33 7.11 99.48 0.71 0.38 16 17 H -0.26 -1.25 7.11 99.48 0.71 -0.54 16 18 H -0.24 -0.80 7.11 99.48 0.71 -0.09 16 19 H 0.08 0.04 7.99 -2.39 -0.02 0.02 16 20 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 21 H 0.07 -0.06 6.65 -2.39 -0.02 -0.07 16 22 H 0.07 0.81 7.99 -2.39 -0.02 0.79 16 23 H 0.40 3.53 8.09 -96.74 -0.78 2.75 16 24 H 0.43 -2.05 9.03 -87.94 -0.79 -2.84 16 25 H 0.14 -1.39 8.14 -2.39 -0.02 -1.41 16 26 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 27 H 0.11 -2.45 8.14 -2.38 -0.02 -2.47 16 28 H 0.11 -2.38 8.13 -2.39 -0.02 -2.40 16 29 H 0.11 -2.26 8.14 -2.39 -0.02 -2.28 16 30 H 0.22 -2.65 8.06 -2.91 -0.02 -2.67 16 31 H 0.34 1.89 8.23 -92.71 -0.76 1.13 16 Total: 0.00 -33.29 280.14 -4.08 -37.37 By element: Atomic # 1 Polarization: -10.35 SS G_CDS: -0.41 Total: -10.76 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 5.80 Total: 2.50 kcal Atomic # 7 Polarization: -12.13 SS G_CDS: -7.07 Total: -19.20 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -4.00 Total: -34.59 kcal Atomic # 14 Polarization: 2.76 SS G_CDS: 1.91 Total: 4.67 kcal Atomic # 16 Polarization: 20.32 SS G_CDS: -0.31 Total: 20.01 kcal Total: -33.29 -4.08 -37.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725587538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.014 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds