Wall clock time and date at job start Mon Mar 30 2020 03:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47145 * 2 1 4 4 S 1.65599 * 120.00200 * 94.99436 * 3 2 1 5 5 O 1.52201 * 109.46732 * 60.00178 * 4 3 2 6 6 O 1.42092 * 109.47305 * 300.00312 * 4 3 2 7 7 C 1.76201 * 109.47174 * 180.02562 * 4 3 2 8 8 N 1.29055 * 125.10274 * 359.97438 * 7 4 3 9 9 C 1.46855 * 107.22046 * 180.02562 * 8 7 4 10 10 N 1.46856 * 105.97809 * 0.02562 * 9 8 7 11 11 C 1.46499 * 126.38794 * 179.73461 * 10 9 8 12 12 C 1.29053 * 107.22566 * 0.02562 * 10 9 8 13 13 C 1.50698 * 109.47287 * 239.99612 * 2 1 3 14 14 N 1.27946 * 120.00042 * 275.00356 * 13 2 1 15 15 Si 1.86800 * 119.99861 * 95.00010 * 13 2 1 16 16 H 1.48500 * 109.47177 * 90.00298 * 15 13 2 17 17 H 1.48497 * 109.47123 * 210.00062 * 15 13 2 18 18 H 1.48501 * 109.47454 * 330.00179 * 15 13 2 19 19 H 1.09001 * 109.47036 * 60.00312 * 1 2 3 20 20 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47185 * 300.00492 * 1 2 3 22 22 H 1.08997 * 109.46588 * 119.99498 * 2 1 3 23 23 H 0.97000 * 119.99603 * 275.00317 * 3 2 1 24 24 H 0.96706 * 114.00099 * 59.99780 * 5 4 3 25 25 H 1.09001 * 110.15051 * 240.87665 * 9 8 7 26 26 H 1.08997 * 110.21277 * 119.16157 * 9 8 7 27 27 H 1.09006 * 109.47025 * 90.00318 * 11 10 9 28 28 H 1.08999 * 109.47205 * 209.99936 * 11 10 9 29 29 H 1.09001 * 109.47426 * 330.00676 * 11 10 9 30 30 H 1.07999 * 125.11108 * 179.97438 * 12 10 9 31 31 H 0.97003 * 119.99571 * 179.97438 * 14 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 2.4121 2.1203 1.4287 5 8 3.5223 1.3378 2.1155 6 8 1.2693 2.1603 2.2720 7 6 2.9625 3.7631 1.1079 8 7 3.0450 4.3032 -0.0613 9 6 3.5459 5.6709 0.1259 10 7 3.7390 5.8363 1.5723 11 6 4.2324 7.0368 2.2516 12 6 3.3989 4.7247 2.1328 13 6 2.0324 -0.7105 -1.2304 14 7 2.1546 -1.9841 -1.2286 15 14 2.4767 0.2683 -2.7581 16 1 3.9094 0.6545 -2.6993 17 1 2.2372 -0.5625 -3.9653 18 1 1.6368 1.4912 -2.8242 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8933 -0.5138 0.8900 23 1 2.1110 1.8628 -0.8369 24 1 4.3351 1.2697 1.5959 25 1 2.8150 6.3919 -0.2405 26 1 4.4939 5.7996 -0.3962 27 1 3.3910 7.6801 2.5093 28 1 4.7611 6.7488 3.1602 29 1 4.9120 7.5749 1.5908 30 1 3.4294 4.5296 3.1946 31 1 2.4776 -2.4414 -2.0208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725587539.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:40 Heat of formation + Delta-G solvation = 60.187288 kcal Electronic energy + Delta-G solvation = -16812.317152 eV Core-core repulsion = 13953.943312 eV Total energy + Delta-G solvation = -2858.373840 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09631 -37.99193 -37.54335 -36.12091 -35.23541 -34.60964 -30.13883 -29.86759 -28.74793 -24.85393 -23.16145 -22.29530 -21.03756 -20.36545 -18.97177 -18.72183 -17.47087 -17.20402 -16.86174 -16.19000 -15.61561 -15.51631 -15.15917 -14.80015 -14.69922 -14.42092 -14.18463 -13.90983 -13.76342 -13.16884 -12.81353 -12.55693 -12.28003 -12.24125 -12.01470 -11.88183 -11.71918 -11.41132 -11.28243 -10.91675 -9.91704 -9.59935 -6.02346 -1.18031 0.91161 1.17334 1.18299 1.29576 1.48791 1.80873 1.94223 2.16178 2.63086 3.10866 3.44973 3.57176 3.70791 3.72995 3.99996 4.02696 4.06210 4.14084 4.51222 4.58175 4.66396 4.72516 4.87239 5.03080 5.22385 5.47853 5.52476 5.61759 6.12795 6.60285 6.67662 7.01438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.176 3.824 3 N -1.077 6.077 4 S 2.099 3.901 5 O -0.914 6.914 6 O -0.940 6.940 7 C -0.344 4.344 8 N -0.471 5.471 9 C 0.189 3.811 10 N -0.501 5.501 11 C 0.069 3.931 12 C 0.181 3.819 13 C -0.006 4.006 14 N -0.633 5.633 15 Si 0.924 3.076 16 H -0.233 1.233 17 H -0.253 1.253 18 H -0.226 1.226 19 H 0.059 0.941 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.397 0.603 24 H 0.428 0.572 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.188 0.812 31 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 7.718 -0.809 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 N -0.831 5.831 4 S 2.195 3.805 5 O -0.764 6.764 6 O -0.923 6.923 7 C -0.586 4.586 8 N -0.215 5.215 9 C -0.024 4.024 10 N -0.194 5.194 11 C -0.072 4.072 12 C -0.002 4.002 13 C -0.256 4.256 14 N -0.246 5.246 15 Si 0.741 3.259 16 H -0.156 1.156 17 H -0.177 1.177 18 H -0.148 1.148 19 H 0.078 0.922 20 H 0.082 0.918 21 H 0.092 0.908 22 H 0.111 0.889 23 H 0.230 0.770 24 H 0.289 0.711 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.205 0.795 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.572 6.895 -0.576 8.883 hybrid contribution 0.533 0.931 -0.463 1.169 sum 6.105 7.825 -1.039 9.980 Atomic orbital electron populations 1.22226 0.94322 1.02411 1.03283 1.19806 0.94480 0.83545 0.95596 1.56727 1.82020 1.18653 1.25663 1.52549 0.80029 0.73622 0.74308 1.85491 1.38536 1.86115 1.66260 1.93052 1.49329 1.84229 1.65725 1.39273 1.13071 1.14225 0.92072 1.74822 1.22622 1.02390 1.21673 1.24523 1.02309 0.97839 0.77732 1.46979 1.47389 1.13587 1.11452 1.22282 1.01213 0.84876 0.98796 1.25865 0.85214 0.87360 1.01789 1.30884 0.93083 0.96884 1.04781 1.68123 1.11020 1.11259 1.34200 0.85741 0.83041 0.81485 0.75676 1.15622 1.17716 1.14821 0.92172 0.91796 0.90815 0.88901 0.76986 0.71052 0.87571 0.88160 0.89684 0.88620 0.88406 0.79498 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 9.50 37.16 0.35 -0.18 16 2 C 0.18 0.50 3.28 -69.08 -0.23 0.27 16 3 N -1.08 -1.99 5.23 -5.88 -0.03 -2.02 16 4 S 2.10 4.98 5.46 -107.50 -0.59 4.39 16 5 O -0.91 -1.06 13.56 -58.38 -0.79 -1.85 16 6 O -0.94 -7.63 18.05 -58.38 -1.05 -8.68 16 7 C -0.34 -0.07 7.48 -15.10 -0.11 -0.18 16 8 N -0.47 -0.21 11.73 -61.13 -0.72 -0.92 16 9 C 0.19 -0.47 8.46 -62.98 -0.53 -1.01 16 10 N -0.50 2.02 3.25 -183.59 -0.60 1.42 16 11 C 0.07 -0.52 11.22 59.85 0.67 0.15 16 12 C 0.18 -0.47 11.50 -15.10 -0.17 -0.64 16 13 C -0.01 -0.01 5.01 -13.90 -0.07 -0.08 16 14 N -0.63 -1.67 13.82 56.23 0.78 -0.89 16 15 Si 0.92 0.32 27.17 -169.99 -4.62 -4.30 16 16 H -0.23 -0.01 7.11 56.52 0.40 0.39 16 17 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 18 H -0.23 -0.09 6.84 56.52 0.39 0.30 16 19 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 20 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 21 H 0.07 0.36 8.05 -51.93 -0.42 -0.06 16 22 H 0.09 0.33 7.99 -51.93 -0.41 -0.08 16 23 H 0.40 0.31 5.87 -34.47 -0.20 0.10 16 24 H 0.43 -1.76 9.03 67.37 0.61 -1.15 16 25 H 0.11 -0.34 8.14 -51.93 -0.42 -0.76 16 26 H 0.10 -0.40 8.14 -51.93 -0.42 -0.83 16 27 H 0.08 -0.67 8.14 -51.93 -0.42 -1.09 16 28 H 0.10 -0.85 8.13 -51.93 -0.42 -1.27 16 29 H 0.10 -0.85 8.14 -51.93 -0.42 -1.27 16 30 H 0.19 -1.01 8.06 -52.49 -0.42 -1.43 16 31 H 0.34 0.25 8.23 -40.82 -0.34 -0.08 16 LS Contribution 280.01 15.07 4.22 4.22 Total: 0.00 -11.46 280.01 -6.45 -17.90 By element: Atomic # 1 Polarization: -4.65 SS G_CDS: -2.96 Total: -7.61 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.09 Total: -1.67 kcal Atomic # 7 Polarization: -1.84 SS G_CDS: -0.57 Total: -2.41 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -1.85 Total: -10.53 kcal Atomic # 14 Polarization: 0.32 SS G_CDS: -4.62 Total: -4.30 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -0.59 Total: 4.39 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -11.46 -6.45 -17.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725587539.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.092 kcal (2) G-P(sol) polarization free energy of solvation -11.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds