Wall clock time and date at job start Mon Mar 30 2020 03:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47145 * 2 1 4 4 S 1.65599 * 120.00200 * 94.99436 * 3 2 1 5 5 O 1.52201 * 109.46732 * 60.00178 * 4 3 2 6 6 O 1.42092 * 109.47305 * 300.00312 * 4 3 2 7 7 C 1.76201 * 109.47174 * 180.02562 * 4 3 2 8 8 N 1.29055 * 125.10274 * 359.97438 * 7 4 3 9 9 C 1.46855 * 107.22046 * 180.02562 * 8 7 4 10 10 N 1.46856 * 105.97809 * 0.02562 * 9 8 7 11 11 C 1.46499 * 126.38794 * 179.73461 * 10 9 8 12 12 C 1.29053 * 107.22566 * 0.02562 * 10 9 8 13 13 C 1.50698 * 109.47287 * 239.99612 * 2 1 3 14 14 N 1.27946 * 120.00042 * 275.00356 * 13 2 1 15 15 Si 1.86800 * 119.99861 * 95.00010 * 13 2 1 16 16 H 1.48500 * 109.47177 * 90.00298 * 15 13 2 17 17 H 1.48497 * 109.47123 * 210.00062 * 15 13 2 18 18 H 1.48501 * 109.47454 * 330.00179 * 15 13 2 19 19 H 1.09001 * 109.47036 * 60.00312 * 1 2 3 20 20 H 1.08997 * 109.47057 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47185 * 300.00492 * 1 2 3 22 22 H 1.08997 * 109.46588 * 119.99498 * 2 1 3 23 23 H 0.97000 * 119.99603 * 275.00317 * 3 2 1 24 24 H 0.96706 * 114.00099 * 59.99780 * 5 4 3 25 25 H 1.09001 * 110.15051 * 240.87665 * 9 8 7 26 26 H 1.08997 * 110.21277 * 119.16157 * 9 8 7 27 27 H 1.09006 * 109.47025 * 90.00318 * 11 10 9 28 28 H 1.08999 * 109.47205 * 209.99936 * 11 10 9 29 29 H 1.09001 * 109.47426 * 330.00676 * 11 10 9 30 30 H 1.07999 * 125.11108 * 179.97438 * 12 10 9 31 31 H 0.97003 * 119.99571 * 179.97438 * 14 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 2.4121 2.1203 1.4287 5 8 3.5223 1.3378 2.1155 6 8 1.2693 2.1603 2.2720 7 6 2.9625 3.7631 1.1079 8 7 3.0450 4.3032 -0.0613 9 6 3.5459 5.6709 0.1259 10 7 3.7390 5.8363 1.5723 11 6 4.2324 7.0368 2.2516 12 6 3.3989 4.7247 2.1328 13 6 2.0324 -0.7105 -1.2304 14 7 2.1546 -1.9841 -1.2286 15 14 2.4767 0.2683 -2.7581 16 1 3.9094 0.6545 -2.6993 17 1 2.2372 -0.5625 -3.9653 18 1 1.6368 1.4912 -2.8242 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8933 -0.5138 0.8900 23 1 2.1110 1.8628 -0.8369 24 1 4.3351 1.2697 1.5959 25 1 2.8150 6.3919 -0.2405 26 1 4.4939 5.7996 -0.3962 27 1 3.3910 7.6801 2.5093 28 1 4.7611 6.7488 3.1602 29 1 4.9120 7.5749 1.5908 30 1 3.4294 4.5296 3.1946 31 1 2.4776 -2.4414 -2.0208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725587539.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:40 Heat of formation + Delta-G solvation = 50.029956 kcal Electronic energy + Delta-G solvation = -16812.757607 eV Core-core repulsion = 13953.943312 eV Total energy + Delta-G solvation = -2858.814295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19948 -38.01306 -37.14080 -36.02910 -35.22625 -34.59758 -30.10244 -29.84830 -28.49478 -24.93656 -23.04036 -22.20047 -20.97748 -20.11068 -18.80846 -18.58702 -17.36664 -17.17800 -16.72287 -16.04009 -15.52849 -15.43775 -15.20294 -14.67558 -14.50144 -14.33388 -14.17524 -13.75305 -13.47549 -13.26440 -12.63886 -12.57022 -12.35723 -12.09154 -12.04786 -11.86566 -11.73928 -11.35698 -11.32979 -10.87410 -9.86758 -9.53310 -5.92594 -0.95055 0.86339 1.15581 1.25541 1.36516 1.49706 1.80227 1.92980 2.34225 2.87700 3.16898 3.68414 3.74328 3.81938 4.10962 4.16289 4.19796 4.37247 4.40625 4.56138 4.58509 4.66274 4.69179 4.83041 4.90223 5.02850 5.34502 5.48353 5.58066 6.44927 6.69163 6.87761 7.02272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.171 3.829 3 N -1.067 6.067 4 S 2.005 3.995 5 O -0.938 6.938 6 O -1.024 7.024 7 C -0.338 4.338 8 N -0.457 5.457 9 C 0.154 3.846 10 N -0.462 5.462 11 C 0.049 3.951 12 C 0.224 3.776 13 C -0.009 4.009 14 N -0.662 5.662 15 Si 0.962 3.038 16 H -0.224 1.224 17 H -0.263 1.263 18 H -0.226 1.226 19 H 0.068 0.932 20 H 0.057 0.943 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.391 0.609 24 H 0.434 0.566 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.224 0.776 31 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.634 12.364 -1.339 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 N -0.818 5.818 4 S 2.092 3.908 5 O -0.791 6.791 6 O -1.008 7.008 7 C -0.583 4.583 8 N -0.193 5.193 9 C -0.059 4.059 10 N -0.145 5.145 11 C -0.089 4.089 12 C 0.038 3.962 13 C -0.258 4.258 14 N -0.276 5.276 15 Si 0.777 3.223 16 H -0.147 1.147 17 H -0.187 1.187 18 H -0.149 1.149 19 H 0.087 0.913 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.224 0.776 24 H 0.297 0.703 25 H 0.156 0.844 26 H 0.161 0.839 27 H 0.122 0.878 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.241 0.759 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.997 11.800 -1.138 14.300 hybrid contribution 0.093 0.489 -0.218 0.543 sum 8.090 12.289 -1.356 14.776 Atomic orbital electron populations 1.22191 0.95736 1.01656 1.02347 1.19747 0.93540 0.85778 0.95050 1.57385 1.81613 1.16743 1.26069 1.64279 0.78856 0.73817 0.73881 1.85401 1.39444 1.86617 1.67633 1.92783 1.53668 1.85524 1.68839 1.40811 1.09630 1.16388 0.91512 1.74835 1.18023 1.03350 1.23070 1.25197 1.05054 0.97128 0.78531 1.47790 1.40901 1.13942 1.11844 1.22918 1.02596 0.83281 1.00105 1.26989 0.79384 0.86151 1.03709 1.31289 0.92159 0.96885 1.05424 1.68144 1.12208 1.12188 1.35084 0.85246 0.83275 0.80495 0.73331 1.14661 1.18705 1.14861 0.91297 0.92363 0.93334 0.91341 0.77648 0.70263 0.84417 0.83856 0.87843 0.86121 0.85965 0.75917 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.50 71.98 0.68 -1.19 16 2 C 0.17 1.82 3.28 44.25 0.14 1.97 16 3 N -1.07 -8.28 5.23 -172.52 -0.90 -9.19 16 4 S 2.01 17.57 5.46 -56.49 -0.31 17.26 16 5 O -0.94 -6.57 13.56 -126.85 -1.72 -8.29 16 6 O -1.02 -22.61 18.05 -126.85 -2.29 -24.90 16 7 C -0.34 0.06 7.48 87.44 0.65 0.72 16 8 N -0.46 0.63 11.73 -347.30 -4.07 -3.44 16 9 C 0.15 -1.60 8.46 170.69 1.44 -0.16 16 10 N -0.46 6.39 3.25 -734.75 -2.39 4.00 16 11 C 0.05 -1.07 11.22 127.77 1.43 0.36 16 12 C 0.22 -1.97 11.50 87.44 1.01 -0.97 16 13 C -0.01 -0.06 5.01 88.67 0.44 0.38 16 14 N -0.66 -5.75 13.82 24.11 0.33 -5.42 16 15 Si 0.96 1.86 27.17 68.60 1.86 3.73 16 16 H -0.22 -0.05 7.11 99.48 0.71 0.66 16 17 H -0.26 -0.76 7.11 99.48 0.71 -0.06 16 18 H -0.23 -0.37 6.84 99.48 0.68 0.31 16 19 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 20 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 21 H 0.05 0.80 8.05 -2.39 -0.02 0.78 16 22 H 0.07 0.97 7.99 -2.39 -0.02 0.95 16 23 H 0.39 1.73 5.87 -96.74 -0.57 1.16 16 24 H 0.43 -1.66 9.03 -87.92 -0.79 -2.45 16 25 H 0.14 -1.72 8.14 -2.39 -0.02 -1.74 16 26 H 0.14 -2.12 8.14 -2.39 -0.02 -2.14 16 27 H 0.10 -2.30 8.14 -2.38 -0.02 -2.32 16 28 H 0.12 -2.95 8.13 -2.39 -0.02 -2.97 16 29 H 0.12 -3.00 8.14 -2.39 -0.02 -3.02 16 30 H 0.22 -3.29 8.06 -2.91 -0.02 -3.31 16 31 H 0.34 1.47 8.23 -92.71 -0.76 0.71 16 Total: 0.00 -33.50 280.01 -3.91 -37.41 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: -0.23 Total: -12.26 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.81 Total: 1.11 kcal Atomic # 7 Polarization: -7.01 SS G_CDS: -7.04 Total: -14.05 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -4.01 Total: -33.20 kcal Atomic # 14 Polarization: 1.86 SS G_CDS: 1.86 Total: 3.73 kcal Atomic # 16 Polarization: 17.57 SS G_CDS: -0.31 Total: 17.26 kcal Total: -33.50 -3.91 -37.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725587539.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.441 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds