Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00029 * 2 1 4 4 H 1.48499 * 109.47427 * 240.00152 * 3 2 1 5 5 H 1.48503 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46929 * 120.00220 * 3 2 1 7 7 C 1.37885 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99798 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46704 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99480 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00213 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99734 * 179.97438 * 11 10 9 14 14 C 1.54788 * 109.46780 * 181.52731 * 13 11 10 15 15 S 1.83549 * 100.39932 * 214.06572 * 14 13 11 16 16 C 1.77559 * 96.35499 * 23.22319 * 15 14 13 17 17 C 1.31346 * 108.13874 * 345.21617 * 16 15 14 18 18 Cl 1.73595 * 120.77435 * 179.77975 * 17 16 15 19 19 H 0.96993 * 119.99751 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46754 * 60.00618 * 9 7 2 21 21 H 1.08990 * 109.47541 * 300.00558 * 9 7 2 22 22 H 0.97002 * 120.00421 * 0.02562 * 10 9 7 23 23 H 1.08993 * 109.42388 * 301.49184 * 13 11 10 24 24 H 1.09001 * 111.22800 * 96.27224 * 14 13 11 25 25 H 1.08998 * 111.22850 * 331.85192 * 14 13 11 26 26 H 1.08002 * 125.92969 * 165.23478 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 -0.0011 12 8 0.5613 -5.1049 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 6 1.9593 -7.3689 -0.0411 15 16 3.0683 -8.4217 0.9742 16 6 3.8418 -7.0930 1.8624 17 6 3.5694 -5.9703 1.2375 18 17 4.1656 -4.4536 1.8357 19 1 -0.4849 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8895 22 1 3.1567 -3.4355 -0.0002 23 1 3.3766 -5.9550 -0.8782 24 1 1.8786 -7.7482 -1.0598 25 1 0.9767 -7.2711 0.4203 26 1 4.4338 -7.1910 2.7604 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725602192.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -28.413311 kcal Electronic energy + Delta-G solvation = -13636.888091 eV Core-core repulsion = 11060.911299 eV Total energy + Delta-G solvation = -2575.976792 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.017 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.52873 -37.01835 -35.38507 -34.27530 -32.36505 -30.21733 -27.63822 -25.07349 -22.46636 -20.75244 -19.55866 -18.04282 -17.01740 -16.02390 -15.73361 -14.94920 -14.76815 -14.21565 -13.68906 -13.23673 -12.90418 -12.60915 -12.41217 -12.09940 -11.99080 -11.61355 -11.04282 -10.92255 -10.78214 -10.50653 -10.38300 -10.28098 -9.43923 -9.19503 -8.76051 -7.95135 -7.66477 -6.18808 -4.25668 1.16962 1.39419 1.80545 2.53807 3.13913 3.23816 3.28767 3.30084 3.93125 4.30127 4.33485 4.44315 4.88413 5.17420 5.33763 5.37923 5.52209 5.64883 5.74766 7.23397 7.32044 7.47095 7.61256 7.93386 8.51520 8.69961 8.95589 9.40370 10.91354 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.041669 B = 0.006090 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.798347 B = 4596.499785 C = 5133.129284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.699 5.699 11 C 0.508 3.492 12 O -0.546 6.546 13 C -0.086 4.086 14 C -0.063 4.063 15 S -0.157 6.157 16 C -0.118 4.118 17 C -0.084 4.084 18 Cl -0.035 7.035 19 H 0.267 0.733 20 H 0.029 0.971 21 H 0.029 0.971 22 H 0.393 0.607 23 H 0.127 0.873 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 -12.989 1.440 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.348 5.348 11 C 0.289 3.711 12 O -0.426 6.426 13 C -0.109 4.109 14 C -0.211 4.211 15 S 0.081 5.919 16 C -0.249 4.249 17 C -0.123 4.123 18 Cl -0.007 7.007 19 H 0.076 0.924 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.228 0.772 23 H 0.145 0.855 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.130 -14.147 1.526 16.388 hybrid contribution 0.921 2.521 0.109 2.686 sum 9.051 -11.626 1.635 14.824 Atomic orbital electron populations 1.69959 1.06075 1.27442 1.48769 1.24933 0.94908 0.99383 0.94661 0.86489 0.79454 0.82348 0.78732 1.20019 1.21024 1.20074 1.21150 0.93192 0.90362 1.53387 0.92017 1.19155 0.88248 0.81830 0.97870 1.46697 1.11751 1.05705 1.70676 1.19793 0.88752 0.84139 0.78393 1.90666 1.16114 1.84392 1.51389 1.21024 0.96605 0.96060 0.97211 1.24490 1.01151 0.91968 1.03532 1.86314 1.46370 1.12711 1.46488 1.25015 1.04079 0.93388 1.02447 1.23121 1.02961 0.88661 0.97553 1.98423 1.86196 1.29639 1.86415 0.92364 0.95332 0.95331 0.77182 0.85519 0.86027 0.85868 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.13 15 2 C 0.07 1.79 5.46 -17.81 -0.10 1.69 15 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 15 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 15 9 C 0.25 6.53 5.43 -5.19 -0.03 6.51 15 10 N -0.70 -14.65 4.67 -61.47 -0.29 -14.94 15 11 C 0.51 9.82 7.00 -10.98 -0.08 9.75 15 12 O -0.55 -12.49 15.42 5.56 0.09 -12.40 15 13 C -0.09 -1.21 3.00 -92.50 -0.28 -1.49 15 14 C -0.06 -0.79 6.90 38.10 0.26 -0.53 15 15 S -0.16 -1.81 23.12 -107.50 -2.49 -4.30 15 16 C -0.12 -1.37 11.07 28.93 0.32 -1.05 15 17 C -0.08 -1.14 5.97 -36.63 -0.22 -1.36 15 18 Cl -0.04 -0.51 25.74 -51.86 -1.33 -1.85 15 19 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 20 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.39 7.40 6.18 -40.82 -0.25 7.15 15 23 H 0.13 1.50 8.14 -51.93 -0.42 1.08 15 24 H 0.12 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.12 1.76 7.00 -51.93 -0.36 1.39 15 26 H 0.18 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 256.90 15.07 3.87 3.87 Total: -1.00 -30.39 256.90 -7.13 -37.52 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.26 Total: 2.88 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.43 Total: -1.44 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.45 Total: -40.07 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.49 Total: -4.30 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.33 Total: -1.85 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.39 -7.13 -37.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725602192.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.106 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds