Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37393 * 120.00268 * 2 1 4 4 H 1.08005 * 119.99896 * 149.87157 * 3 2 1 5 5 C 1.37941 * 119.99906 * 329.86869 * 3 2 1 6 6 N 1.32101 * 120.00277 * 158.38284 * 5 3 2 7 7 Si 1.86800 * 120.00156 * 338.38286 * 5 3 2 8 8 H 1.48502 * 109.47150 * 95.07964 * 7 5 3 9 9 H 1.48499 * 109.47355 * 215.08421 * 7 5 3 10 10 H 1.48495 * 109.47167 * 335.08474 * 7 5 3 11 11 C 1.37255 * 119.99871 * 179.97438 * 2 1 3 12 12 O 1.35607 * 119.99708 * 91.08143 * 11 2 1 13 13 C 1.35780 * 120.00182 * 271.08581 * 11 2 1 14 14 C 1.51120 * 123.53947 * 178.25706 * 13 11 2 15 15 S 1.82220 * 103.69222 * 179.97438 * 14 13 11 16 16 C 1.76973 * 95.19609 * 359.97438 * 15 14 13 17 17 C 1.33450 * 108.52941 * 359.76891 * 16 15 14 18 18 Cl 1.73603 * 120.17348 * 180.20549 * 17 16 15 19 19 H 1.08995 * 109.47694 * 238.35288 * 1 2 3 20 20 H 1.09003 * 109.46559 * 358.35358 * 1 2 3 21 21 H 1.08997 * 109.47078 * 118.34927 * 1 2 3 22 22 H 0.96998 * 120.00515 * 179.97438 * 6 5 3 23 23 H 0.96697 * 114.00034 * 355.24595 * 12 11 2 24 24 H 1.09000 * 110.58215 * 298.51531 * 14 13 11 25 25 H 1.09004 * 110.58329 * 61.25894 * 14 13 11 26 26 H 1.08003 * 125.73664 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1520 1.1898 0.0000 4 1 3.1226 1.2529 0.4695 5 6 1.6021 2.3037 -0.5997 6 7 2.0144 3.5106 -0.2554 7 14 0.2744 2.1057 -1.8986 8 1 -1.0622 2.2276 -1.2630 9 1 0.4299 3.1621 -2.9306 10 1 0.3997 0.7698 -2.5349 11 6 2.1512 -1.1887 0.0005 12 8 2.5094 -1.7653 -1.1734 13 6 2.4714 -1.7873 1.1765 14 6 3.1906 -3.1131 1.2698 15 16 3.3389 -3.3979 3.0635 16 6 2.5243 -1.8983 3.5319 17 6 2.1772 -1.2403 2.4239 18 17 1.3572 0.2857 2.5360 19 1 -0.3634 -0.5392 0.8748 20 1 -0.3632 1.0273 0.0295 21 1 -0.3633 -0.4880 -0.9044 22 1 1.6280 4.2939 -0.6773 23 1 2.1759 -1.3049 -1.9556 24 1 2.6007 -3.9026 0.8042 25 1 4.1753 -3.0484 0.8069 26 1 2.3419 -1.5691 4.5442 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725602276.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = 8.410703 kcal Electronic energy + Delta-G solvation = -14394.971553 eV Core-core repulsion = 11820.591570 eV Total energy + Delta-G solvation = -2574.379983 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.017 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.57868 -37.89630 -36.87058 -36.17304 -33.67886 -30.96820 -28.66993 -27.85965 -24.98728 -23.09399 -20.00747 -19.50882 -18.45174 -18.15821 -17.11858 -16.68236 -15.77024 -15.32086 -14.92015 -14.68932 -14.55310 -14.33985 -13.89218 -13.66779 -13.33389 -13.24410 -12.97593 -12.30516 -12.10099 -11.97735 -11.58124 -11.11898 -10.95981 -10.64164 -9.72670 -9.28883 -8.23009 -7.82845 -5.75430 0.01187 0.66328 1.09284 1.33570 1.41345 1.51267 1.82030 2.06924 2.35887 2.66677 2.96144 3.25881 4.10017 4.24569 4.39953 4.41485 4.58383 4.65762 4.83712 4.89063 5.20108 5.58614 5.77575 5.99219 6.39823 6.88906 7.47161 7.73416 8.93927 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.009505 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.395493 B = 2945.251487 C = 3343.802676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.580 5.580 3 C -0.244 4.244 4 H 0.048 0.952 5 C -0.011 4.011 6 N -0.942 5.942 7 Si 0.945 3.055 8 H -0.277 1.277 9 H -0.312 1.312 10 H -0.243 1.243 11 C 0.433 3.567 12 O -0.486 6.486 13 C -0.264 4.264 14 C -0.010 4.010 15 S -0.142 6.142 16 C -0.189 4.189 17 C -0.002 4.002 18 Cl -0.049 7.049 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.265 0.735 23 H 0.411 0.589 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 -11.768 0.886 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.312 5.312 3 C -0.371 4.371 4 H 0.066 0.934 5 C -0.208 4.208 6 N -0.585 5.585 7 Si 0.772 3.228 8 H -0.204 1.204 9 H -0.240 1.240 10 H -0.166 1.166 11 C 0.290 3.710 12 O -0.286 6.286 13 C -0.269 4.269 14 C -0.159 4.159 15 S 0.096 5.904 16 C -0.321 4.321 17 C -0.040 4.040 18 Cl -0.020 7.020 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.267 0.733 24 H 0.131 0.869 25 H 0.120 0.880 26 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.846 -12.955 1.861 13.218 hybrid contribution -1.283 2.256 -1.524 3.009 sum -3.129 -10.699 0.337 11.153 Atomic orbital electron populations 1.21718 0.80956 1.01461 1.00291 1.41927 1.02837 1.00895 1.85558 1.18198 1.03058 0.85039 1.30810 0.93438 1.25754 1.00867 0.94400 0.99756 1.70194 1.46880 0.98147 1.43258 0.85942 0.79142 0.78200 0.79479 1.20364 1.24030 1.16581 1.18131 0.85603 0.82185 0.85128 1.84948 1.72632 1.54594 1.16463 1.18032 1.17763 1.01007 0.90088 1.22335 1.03498 0.96310 0.93766 1.85530 1.73247 1.25674 1.05996 1.25184 1.07674 0.98572 1.00643 1.20114 1.00459 0.89900 0.93483 1.98435 1.76988 1.28305 1.98301 0.93193 0.92351 0.93111 0.92626 0.73267 0.86882 0.87990 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.67 7.19 127.77 0.92 4.58 15 2 N -0.58 -24.17 1.16 -653.91 -0.76 -24.93 15 3 C -0.24 -12.41 7.74 83.75 0.65 -11.76 15 4 H 0.05 2.81 8.06 -2.91 -0.02 2.79 15 5 C -0.01 -0.59 5.17 84.58 0.44 -0.15 15 6 N -0.94 -54.87 13.99 21.51 0.30 -54.57 15 7 Si 0.95 40.44 24.46 68.60 1.68 42.11 15 8 H -0.28 -11.46 6.71 99.48 0.67 -10.79 15 9 H -0.31 -14.00 7.11 99.48 0.71 -13.29 15 10 H -0.24 -9.03 6.78 99.48 0.67 -8.36 15 11 C 0.43 16.26 6.28 83.27 0.52 16.79 15 12 O -0.49 -15.40 13.13 -89.18 -1.17 -16.57 15 13 C -0.26 -9.63 5.89 -20.03 -0.12 -9.74 15 14 C -0.01 -0.31 6.82 71.37 0.49 0.17 15 15 S -0.14 -4.22 23.31 -56.49 -1.32 -5.53 15 16 C -0.19 -6.22 11.10 66.73 0.74 -5.48 15 17 C 0.00 -0.08 6.18 21.45 0.13 0.06 15 18 Cl -0.05 -2.02 22.24 -2.72 -0.06 -2.09 15 19 H 0.05 1.77 7.12 -2.39 -0.02 1.75 15 20 H 0.06 2.39 4.46 -2.39 -0.01 2.38 15 21 H 0.05 1.63 7.37 -2.39 -0.02 1.61 15 22 H 0.26 14.70 8.32 -92.71 -0.77 13.93 15 23 H 0.41 10.79 9.00 -74.06 -0.67 10.13 15 24 H 0.11 2.96 8.14 -2.39 -0.02 2.94 15 25 H 0.10 2.93 8.14 -2.38 -0.02 2.91 15 26 H 0.18 5.14 8.06 -2.91 -0.02 5.12 15 Total: -1.00 -58.91 243.92 2.92 -55.99 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.48 Total: 11.12 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 3.77 Total: -5.53 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -0.46 Total: -79.50 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.17 Total: -16.57 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.68 Total: 42.11 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -1.32 Total: -5.53 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.06 Total: -2.09 kcal Total: -58.91 2.92 -55.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725602276.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.400 kcal (2) G-P(sol) polarization free energy of solvation -58.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds