Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.46953 * 2 1 4 4 N 1.27941 * 120.00184 * 124.99947 * 3 2 1 5 5 Si 1.86795 * 119.99905 * 304.99666 * 3 2 1 6 6 H 1.48505 * 109.47043 * 359.97438 * 5 3 2 7 7 H 1.48495 * 109.47146 * 120.00133 * 5 3 2 8 8 H 1.48499 * 109.47179 * 240.00131 * 5 3 2 9 9 S 1.81401 * 109.47171 * 119.99601 * 2 1 3 10 10 O 1.52202 * 108.33560 * 302.21520 * 9 2 1 11 11 O 1.42105 * 114.65182 * 181.10923 * 9 2 1 12 12 N 1.65597 * 108.33323 * 60.00401 * 9 2 1 13 13 C 1.30040 * 120.00531 * 179.97438 * 12 9 2 14 14 C 1.47847 * 125.97621 * 179.97438 * 13 12 9 15 15 N 1.28545 * 110.21988 * 180.02562 * 14 13 12 16 16 C 1.46502 * 125.42633 * 180.02562 * 15 14 13 17 17 C 1.46559 * 109.14990 * 0.02562 * 15 14 13 18 18 N 1.38190 * 125.96574 * 359.69423 * 13 12 9 19 19 H 1.09002 * 109.47720 * 299.99987 * 1 2 3 20 20 H 1.09000 * 109.47385 * 60.00385 * 1 2 3 21 21 H 1.09009 * 109.46734 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47677 * 239.99457 * 2 1 3 23 23 H 0.96993 * 120.00294 * 180.02562 * 4 3 2 24 24 H 0.96703 * 113.99628 * 55.06304 * 10 9 2 25 25 H 1.08002 * 124.88827 * 0.02896 * 14 13 12 26 26 H 1.09002 * 109.46811 * 359.97008 * 16 15 14 27 27 H 1.08993 * 109.47150 * 119.97913 * 16 15 14 28 28 H 1.08998 * 109.46676 * 239.97717 * 16 15 14 29 29 H 1.08997 * 110.03035 * 119.28494 * 17 15 14 30 30 H 1.08998 * 110.03229 * 240.66061 * 17 15 14 31 31 H 0.96995 * 127.02438 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.8446 1.8122 0.9076 5 14 1.4688 2.6106 -1.3252 6 1 0.5372 1.9164 -2.2502 7 1 0.7744 3.7617 -0.6943 8 1 2.6472 3.0995 -2.0851 9 16 2.1346 -0.8550 1.4812 10 8 1.5681 -0.1504 2.7056 11 8 3.5496 -0.8976 1.6049 12 7 1.5673 -2.4105 1.4528 13 6 1.8682 -3.2302 2.4164 14 6 1.4356 -4.6398 2.5246 15 7 1.9063 -5.1679 3.5979 16 6 1.6844 -6.5492 4.0326 17 6 2.7003 -4.1681 4.3174 18 7 2.6528 -2.9374 3.5157 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1676 2.7268 0.9078 24 1 0.6039 -0.0760 2.7055 25 1 0.8137 -5.1520 1.8054 26 1 1.0564 -7.0628 3.3046 27 1 2.6422 -7.0631 4.1130 28 1 1.1893 -6.5494 5.0037 29 1 2.2732 -3.9922 5.3047 30 1 3.7316 -4.5080 4.4123 31 1 3.0823 -2.0916 3.7180 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725658913.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = 59.852763 kcal Electronic energy + Delta-G solvation = -16958.257024 eV Core-core repulsion = 14099.868678 eV Total energy + Delta-G solvation = -2858.388346 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86130 -37.59466 -37.12844 -36.50870 -35.98409 -33.07674 -32.80712 -29.64987 -27.36733 -25.21784 -23.44070 -21.68785 -21.04742 -20.38067 -19.10010 -18.25484 -17.21679 -16.94031 -16.43859 -16.25138 -16.14775 -15.71792 -15.33918 -14.62700 -14.52120 -14.21791 -14.09800 -13.72012 -13.46999 -13.13786 -12.87594 -12.71102 -12.55272 -12.45561 -12.33945 -12.00460 -11.63247 -11.45957 -10.95961 -10.19484 -9.79273 -9.37886 -5.71719 -0.94882 0.76413 1.05362 1.38226 1.49463 1.65255 1.74075 1.83719 2.43414 2.51011 3.01277 3.59041 3.72870 3.81238 4.09116 4.23239 4.24339 4.35160 4.44032 4.56156 4.63548 4.89131 4.96728 5.09496 5.16231 5.26695 5.44042 5.68722 6.01571 6.22151 6.39648 6.82508 7.31020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.541 4.541 3 C 0.013 3.987 4 N -0.685 5.685 5 Si 0.960 3.040 6 H -0.212 1.212 7 H -0.241 1.241 8 H -0.264 1.264 9 S 1.990 4.010 10 O -0.940 6.940 11 O -1.009 7.009 12 N -0.869 5.869 13 C 0.273 3.727 14 C 0.241 3.759 15 N -0.479 5.479 16 C 0.064 3.936 17 C 0.306 3.694 18 N -0.799 5.799 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.095 0.905 22 H 0.117 0.883 23 H 0.342 0.658 24 H 0.424 0.576 25 H 0.246 0.754 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 -13.250 4.071 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.640 4.640 3 C -0.233 4.233 4 N -0.300 5.300 5 Si 0.774 3.226 6 H -0.133 1.133 7 H -0.164 1.164 8 H -0.189 1.189 9 S 2.100 3.900 10 O -0.789 6.789 11 O -0.997 6.997 12 N -0.725 5.725 13 C 0.010 3.990 14 C 0.056 3.944 15 N -0.170 5.170 16 C -0.074 4.074 17 C 0.095 3.905 18 N -0.455 5.455 19 H 0.083 0.917 20 H 0.086 0.914 21 H 0.114 0.886 22 H 0.135 0.865 23 H 0.159 0.841 24 H 0.286 0.714 25 H 0.262 0.738 26 H 0.146 0.854 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.967 -12.454 4.269 14.895 hybrid contribution 1.231 1.794 -0.210 2.186 sum -5.736 -10.660 4.060 12.768 Atomic orbital electron populations 1.21339 0.88697 1.04650 1.02810 1.28821 1.06258 1.01076 1.27849 1.30572 0.91800 1.02090 0.98806 1.68316 1.11122 1.23681 1.26926 0.85315 0.81277 0.77688 0.78303 1.13294 1.16448 1.18899 1.57289 0.82302 0.75328 0.75086 1.85548 1.32213 1.87927 1.73238 1.92898 1.37185 1.86025 1.83617 1.76116 1.58765 1.14735 1.22908 1.20666 0.91316 0.93921 0.93118 1.25455 0.86763 0.94107 0.88078 1.46080 1.40065 1.14004 1.16811 1.22774 1.05480 0.74473 1.04680 1.22219 0.97172 0.78415 0.92654 1.46528 1.60073 1.14236 1.24678 0.91727 0.91364 0.88602 0.86535 0.84095 0.71415 0.73824 0.85434 0.88639 0.87282 0.86867 0.89151 0.74080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 61. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.26 8.60 71.98 0.62 0.36 16 2 C -0.54 -5.82 3.18 29.85 0.10 -5.72 16 3 C 0.01 0.17 5.33 88.68 0.47 0.64 16 4 N -0.69 -12.32 12.00 24.11 0.29 -12.03 16 5 Si 0.96 5.61 28.01 68.60 1.92 7.54 16 6 H -0.21 -0.60 6.70 99.48 0.67 0.07 16 7 H -0.24 -1.29 7.11 99.48 0.71 -0.59 16 8 H -0.26 -2.20 7.11 99.48 0.71 -1.49 16 9 S 1.99 31.83 3.10 -56.49 -0.18 31.65 16 10 O -0.94 -13.72 13.15 -126.68 -1.67 -15.38 16 11 O -1.01 -29.22 16.80 -126.68 -2.13 -31.35 16 12 N -0.87 -7.65 11.07 -51.02 -0.56 -8.21 16 13 C 0.27 0.97 7.83 136.36 1.07 2.04 16 14 C 0.24 -2.57 11.40 87.72 1.00 -1.57 16 15 N -0.48 7.05 3.20 -734.90 -2.35 4.69 16 16 C 0.06 -1.49 11.20 127.77 1.43 -0.06 16 17 C 0.31 -2.62 8.39 170.76 1.43 -1.18 16 18 N -0.80 -3.31 6.33 -348.12 -2.20 -5.51 16 19 H 0.06 -0.03 7.26 -2.39 -0.02 -0.05 16 20 H 0.07 0.00 6.38 -2.39 -0.02 -0.01 16 21 H 0.10 -0.08 8.14 -2.38 -0.02 -0.10 16 22 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.34 4.60 8.23 -92.71 -0.76 3.84 16 24 H 0.42 1.97 7.96 -87.93 -0.70 1.27 16 25 H 0.25 -4.88 8.06 -2.91 -0.02 -4.91 16 26 H 0.13 -3.48 8.03 -2.39 -0.02 -3.49 16 27 H 0.10 -2.25 8.14 -2.39 -0.02 -2.27 16 28 H 0.11 -2.73 8.14 -2.39 -0.02 -2.75 16 29 H 0.11 -1.46 8.14 -2.39 -0.02 -1.48 16 30 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H 0.42 4.76 7.51 -92.71 -0.70 4.06 16 Total: 0.00 -40.79 272.79 -1.03 -41.82 By element: Atomic # 1 Polarization: -7.45 SS G_CDS: -0.27 Total: -7.72 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.12 Total: -5.50 kcal Atomic # 7 Polarization: -16.23 SS G_CDS: -4.83 Total: -21.06 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -3.79 Total: -46.73 kcal Atomic # 14 Polarization: 5.61 SS G_CDS: 1.92 Total: 7.54 kcal Atomic # 16 Polarization: 31.83 SS G_CDS: -0.18 Total: 31.65 kcal Total: -40.79 -1.03 -41.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725658913.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.675 kcal (2) G-P(sol) polarization free energy of solvation -40.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds