Wall clock time and date at job start Mon Mar 30 2020 03:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47419 * 2 1 4 4 N 1.27943 * 120.00084 * 235.00454 * 3 2 1 5 5 Si 1.86796 * 119.99741 * 55.00044 * 3 2 1 6 6 H 1.48496 * 109.47348 * 60.00454 * 5 3 2 7 7 H 1.48509 * 109.46985 * 180.02562 * 5 3 2 8 8 H 1.48505 * 109.47502 * 299.99828 * 5 3 2 9 9 S 1.81404 * 109.46960 * 239.99946 * 2 1 3 10 10 O 1.52203 * 108.32837 * 57.78757 * 9 2 1 11 11 O 1.42098 * 114.64991 * 178.89259 * 9 2 1 12 12 N 1.65600 * 108.32994 * 300.00179 * 9 2 1 13 13 C 1.30045 * 119.99484 * 179.97438 * 12 9 2 14 14 C 1.47846 * 125.96665 * 179.97438 * 13 12 9 15 15 N 1.28552 * 110.21521 * 180.02562 * 14 13 12 16 16 C 1.46500 * 125.42456 * 180.02562 * 15 14 13 17 17 C 1.46555 * 109.15150 * 0.02562 * 15 14 13 18 18 N 1.38187 * 125.97202 * 359.69784 * 13 12 9 19 19 H 1.09000 * 109.46986 * 300.00096 * 1 2 3 20 20 H 1.09002 * 109.47075 * 59.99368 * 1 2 3 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47070 * 120.00075 * 2 1 3 23 23 H 0.96993 * 119.99935 * 179.97438 * 4 3 2 24 24 H 0.96700 * 114.00508 * 304.93371 * 10 9 2 25 25 H 1.07997 * 124.89244 * 0.02562 * 14 13 12 26 26 H 1.08997 * 109.47402 * 359.97438 * 16 15 14 27 27 H 1.09000 * 109.46894 * 119.97877 * 16 15 14 28 28 H 1.09003 * 109.47236 * 239.98023 * 16 15 14 29 29 H 1.08997 * 110.03313 * 119.28510 * 17 15 14 30 30 H 1.09002 * 110.03068 * 240.65822 * 17 15 14 31 31 H 0.96995 * 127.02306 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.8448 1.8121 -0.9077 5 14 1.4690 2.6106 1.3252 6 1 1.8647 2.0903 2.6585 7 1 2.1020 3.9355 1.1026 8 1 -0.0082 2.7525 1.2676 9 16 2.1347 -0.8552 -1.4812 10 8 1.5680 -0.1505 -2.7055 11 8 3.5496 -0.8977 -1.6048 12 7 1.5672 -2.4106 -1.4526 13 6 1.8673 -3.2300 -2.4168 14 6 1.4352 -4.6398 -2.5244 15 7 1.9057 -5.1679 -3.5979 16 6 1.6833 -6.5491 -4.0328 17 6 2.6998 -4.1682 -4.3175 18 7 2.6413 -2.9335 -3.5225 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 0.8900 23 1 3.1679 2.7266 -0.9079 24 1 0.6039 -0.0760 -2.7055 25 1 0.8139 -5.1522 -1.8048 26 1 1.0562 -7.0629 -3.3043 27 1 1.1874 -6.5490 -5.0034 28 1 2.6411 -7.0631 -4.1141 29 1 3.7312 -4.5079 -4.4117 30 1 2.2732 -3.9928 -5.3051 31 1 3.0621 -2.0847 -3.7303 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725658914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:03 Heat of formation + Delta-G solvation = 67.100793 kcal Electronic energy + Delta-G solvation = -16958.021495 eV Core-core repulsion = 14099.947447 eV Total energy + Delta-G solvation = -2858.074048 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30987 -38.12240 -37.48524 -36.69259 -35.90356 -33.27962 -32.87159 -29.47493 -27.23790 -25.62135 -23.30949 -21.77335 -21.09495 -20.92379 -19.17412 -18.47133 -17.01073 -16.87443 -16.71343 -16.32355 -16.02786 -15.86677 -15.29606 -14.90881 -14.60820 -14.31344 -14.26017 -13.84777 -13.51562 -13.33031 -13.06786 -12.86073 -12.69308 -12.64046 -12.53047 -12.28724 -11.53483 -11.39457 -11.36304 -10.16897 -9.98067 -9.41767 -5.77131 -1.15067 0.66732 0.98319 1.30861 1.60323 1.65275 1.79181 1.90719 2.24711 2.73960 2.84776 3.26934 3.42842 3.89814 4.03028 4.06826 4.15363 4.20939 4.37568 4.44315 4.51027 4.53497 4.56213 4.70793 4.96470 5.03963 5.51198 5.59517 6.12410 6.32276 6.65555 6.69931 7.53461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.503 4.503 3 C 0.009 3.991 4 N -0.638 5.638 5 Si 0.940 3.060 6 H -0.232 1.232 7 H -0.248 1.248 8 H -0.230 1.230 9 S 2.146 3.854 10 O -0.911 6.911 11 O -0.911 6.911 12 N -0.881 5.881 13 C 0.285 3.715 14 C 0.086 3.914 15 N -0.548 5.548 16 C 0.098 3.902 17 C 0.344 3.656 18 N -0.784 5.784 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.094 0.906 22 H 0.145 0.855 23 H 0.351 0.649 24 H 0.428 0.572 25 H 0.179 0.821 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -4.274 -0.794 7.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.609 4.609 3 C -0.240 4.240 4 N -0.253 5.253 5 Si 0.755 3.245 6 H -0.154 1.154 7 H -0.171 1.171 8 H -0.152 1.152 9 S 2.262 3.738 10 O -0.759 6.759 11 O -0.898 6.898 12 N -0.759 5.759 13 C 0.043 3.957 14 C -0.081 4.081 15 N -0.255 5.255 16 C -0.044 4.044 17 C 0.132 3.868 18 N -0.439 5.439 19 H 0.093 0.907 20 H 0.080 0.920 21 H 0.113 0.887 22 H 0.162 0.838 23 H 0.170 0.830 24 H 0.290 0.710 25 H 0.196 0.804 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.820 -3.452 -1.046 6.020 hybrid contribution 0.535 1.302 0.267 1.433 sum -4.285 -2.150 -0.779 4.857 Atomic orbital electron populations 1.21529 0.89361 1.04887 1.03373 1.28615 1.05650 1.02109 1.24523 1.29884 0.93782 1.00178 1.00120 1.68130 1.08356 1.24321 1.24535 0.85615 0.82570 0.77500 0.78846 1.15444 1.17072 1.15224 1.38263 0.83418 0.76817 0.75343 1.85661 1.32952 1.87650 1.69626 1.93313 1.29629 1.85223 1.81650 1.75380 1.66819 1.08187 1.25536 1.19226 0.92392 0.92872 0.91193 1.23029 0.98113 0.95508 0.91490 1.44488 1.49158 1.11754 1.20096 1.21818 1.02520 0.78391 1.01673 1.21354 0.94965 0.79174 0.91330 1.45917 1.60731 1.12991 1.24223 0.90652 0.92008 0.88739 0.83776 0.83036 0.70963 0.80449 0.89210 0.90790 0.91478 0.92491 0.91634 0.73277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.31 8.60 37.16 0.32 0.63 16 2 C -0.50 -0.44 3.18 -27.88 -0.09 -0.53 16 3 C 0.01 0.02 5.33 -13.90 -0.07 -0.06 16 4 N -0.64 -2.48 12.00 56.23 0.67 -1.81 16 5 Si 0.94 -0.43 27.83 -169.99 -4.73 -5.16 16 6 H -0.23 0.00 7.11 56.52 0.40 0.41 16 7 H -0.25 -0.06 7.11 56.52 0.40 0.35 16 8 H -0.23 0.27 7.03 56.52 0.40 0.67 16 9 S 2.15 8.83 3.10 -107.50 -0.33 8.50 16 10 O -0.91 -2.74 13.11 -58.55 -0.77 -3.50 16 11 O -0.91 -8.84 16.84 -58.55 -0.99 -9.83 16 12 N -0.88 -3.14 11.07 32.52 0.36 -2.78 16 13 C 0.29 1.02 7.83 -154.18 -1.21 -0.19 16 14 C 0.09 0.02 11.40 -14.99 -0.17 -0.15 16 15 N -0.55 0.71 3.20 -183.64 -0.59 0.12 16 16 C 0.10 -0.48 11.20 59.85 0.67 0.19 16 17 C 0.34 -0.01 8.39 -63.19 -0.53 -0.54 16 18 N -0.78 -2.65 6.33 -61.38 -0.39 -3.04 16 19 H 0.07 -0.25 6.59 -51.93 -0.34 -0.59 16 20 H 0.06 -0.24 7.26 -51.93 -0.38 -0.62 16 21 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 22 H 0.14 -0.06 8.14 -51.92 -0.42 -0.48 16 23 H 0.35 0.64 8.23 -40.82 -0.34 0.30 16 24 H 0.43 -0.91 7.96 67.37 0.54 -0.38 16 25 H 0.18 -0.44 8.06 -52.49 -0.42 -0.86 16 26 H 0.09 -0.56 8.03 -51.93 -0.42 -0.98 16 27 H 0.07 -0.43 8.14 -51.93 -0.42 -0.85 16 28 H 0.07 -0.36 8.14 -51.93 -0.42 -0.78 16 29 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 31 H 0.42 2.01 7.50 -40.82 -0.31 1.71 16 LS Contribution 273.15 15.07 4.12 4.12 Total: 0.00 -11.13 273.15 -6.73 -17.86 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -3.00 Total: -3.83 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.08 Total: -0.65 kcal Atomic # 7 Polarization: -7.56 SS G_CDS: 0.06 Total: -7.50 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.75 Total: -13.33 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -4.73 Total: -5.16 kcal Atomic # 16 Polarization: 8.83 SS G_CDS: -0.33 Total: 8.50 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -11.13 -6.73 -17.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725658914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.959 kcal (2) G-P(sol) polarization free energy of solvation -11.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds