Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47533 * 2 1 4 4 C 1.28553 * 125.42625 * 114.69267 * 3 2 1 5 5 C 1.47843 * 110.21578 * 180.26928 * 4 3 2 6 6 N 1.30040 * 125.96977 * 180.02562 * 5 4 3 7 7 S 1.65610 * 120.00001 * 179.97438 * 6 5 4 8 8 O 1.52198 * 109.46672 * 60.00182 * 7 6 5 9 9 O 1.42091 * 109.47132 * 300.00432 * 7 6 5 10 10 C 1.76198 * 109.46986 * 179.97438 * 7 6 5 11 11 H 1.07996 * 120.00057 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99898 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00280 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99985 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47000 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46885 * 120.00214 * 14 12 10 17 17 H 1.48502 * 109.47221 * 239.99871 * 14 12 10 18 18 N 1.38196 * 108.06164 * 359.97438 * 5 4 3 19 19 C 1.46566 * 125.42377 * 295.00580 * 3 2 1 20 20 H 1.09004 * 109.46639 * 299.99715 * 1 2 3 21 21 H 1.08991 * 109.47330 * 59.99581 * 1 2 3 22 22 H 1.09003 * 109.47578 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47151 * 239.99954 * 2 1 3 24 24 H 1.09004 * 109.47459 * 120.00046 * 2 1 3 25 25 H 1.07991 * 124.88971 * 0.24665 * 4 3 2 26 26 H 0.96707 * 114.00221 * 59.99837 * 8 7 6 27 27 H 0.97000 * 120.00255 * 179.97438 * 13 12 10 28 28 H 0.96998 * 127.02076 * 180.02562 * 18 5 4 29 29 H 1.09003 * 110.02675 * 299.02339 * 19 3 2 30 30 H 1.08999 * 110.02981 * 60.44061 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6794 1.9378 0.9517 5 6 2.9967 3.3388 0.6021 6 7 3.6545 4.1808 1.3432 7 16 3.9277 5.7221 0.8025 8 8 2.5961 6.4152 0.5518 9 8 4.6721 5.6748 -0.4069 10 6 4.8361 6.6184 2.0174 11 1 5.1217 6.1379 2.9415 12 6 5.1823 7.9331 1.7884 13 7 4.8350 8.5182 0.6629 14 14 6.1460 8.8831 3.0762 15 1 6.4118 8.0045 4.2434 16 1 7.4345 9.3378 2.4945 17 1 5.3572 10.0625 3.5145 18 7 2.4730 3.5969 -0.6506 19 6 1.8256 2.3504 -1.0824 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.9618 1.4521 1.8740 26 1 2.0343 6.4833 1.3360 27 1 5.0783 9.4433 0.5020 28 1 2.5225 4.4306 -1.1438 29 1 2.2919 1.9855 -1.9976 30 1 0.7615 2.5196 -1.2469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725658989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = -19.811031 kcal Electronic energy + Delta-G solvation = -16272.939346 eV Core-core repulsion = 13424.752258 eV Total energy + Delta-G solvation = -2848.187088 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64916 -38.75630 -36.91087 -36.16003 -35.43910 -33.08959 -31.30884 -28.61451 -27.25290 -25.14547 -22.34868 -21.56702 -21.22665 -20.57631 -18.87800 -17.76765 -17.00454 -16.74433 -16.33196 -16.11227 -15.64058 -15.44292 -14.90947 -14.40974 -14.23303 -13.75195 -13.50651 -13.35247 -13.12205 -13.08779 -12.91385 -12.58759 -12.39570 -12.32642 -11.78108 -11.47931 -11.38994 -10.69066 -10.11205 -9.54913 -9.07541 -7.90202 -5.77795 -0.43488 1.27089 1.35880 1.54685 1.83214 2.18764 2.36555 2.38946 2.65910 3.03106 3.35547 3.68149 4.25861 4.40846 4.45390 4.68254 4.70476 4.90785 4.99437 5.06067 5.13876 5.28086 5.36482 5.47060 5.69932 6.02322 6.39127 6.45893 6.86668 7.57173 7.81949 7.90093 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.062156 B = 0.005755 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.371563 B = 4864.005194 C = 5055.125707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 N -0.607 5.607 4 C -0.128 4.128 5 C 0.238 3.762 6 N -0.969 5.969 7 S 2.434 3.566 8 O -0.892 6.892 9 O -1.017 7.017 10 C -0.936 4.936 11 H 0.146 0.854 12 C 0.065 3.935 13 N -0.868 5.868 14 Si 1.012 2.988 15 H -0.244 1.244 16 H -0.263 1.263 17 H -0.246 1.246 18 N -0.804 5.804 19 C 0.373 3.627 20 H 0.045 0.955 21 H 0.050 0.950 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.145 0.855 26 H 0.458 0.542 27 H 0.309 0.691 28 H 0.402 0.598 29 H 0.029 0.971 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -5.850 2.991 9.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 N -0.325 5.325 4 C -0.267 4.267 5 C 0.020 3.980 6 N -0.865 5.865 7 S 2.551 3.449 8 O -0.746 6.746 9 O -1.005 7.005 10 C -1.077 5.077 11 H 0.163 0.837 12 C -0.152 4.152 13 N -0.497 5.497 14 Si 0.827 3.173 15 H -0.167 1.167 16 H -0.188 1.188 17 H -0.169 1.169 18 N -0.453 5.453 19 C 0.160 3.840 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.105 0.895 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.162 0.838 26 H 0.325 0.675 27 H 0.120 0.880 28 H 0.241 0.759 29 H 0.047 0.953 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.856 -5.560 1.946 9.039 hybrid contribution 0.350 1.389 -0.088 1.436 sum -6.506 -4.170 1.858 7.948 Atomic orbital electron populations 1.22149 0.95659 1.02802 1.01556 1.21197 0.94404 0.79103 1.02665 1.43300 1.60042 1.11538 1.17582 1.20514 1.16837 0.90857 0.98493 1.19504 1.00581 0.94859 0.83078 1.74685 1.56635 1.09162 1.46009 1.12924 0.77144 0.78257 0.76592 1.85761 1.48944 1.87422 1.52495 1.93231 1.70408 1.87579 1.49248 1.29389 1.49798 1.07662 1.20834 0.83663 1.26327 0.93239 0.97126 0.98474 1.70012 1.39596 1.16346 1.23782 0.84758 0.77675 0.77828 0.77002 1.16669 1.18783 1.16923 1.45803 1.65106 1.14208 1.20196 1.20790 0.95121 0.78988 0.89080 0.93545 0.93106 0.89520 0.91622 0.89617 0.83773 0.67521 0.87976 0.75894 0.95349 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.06 71.98 0.72 -2.54 16 2 C 0.15 3.62 6.93 86.38 0.60 4.21 16 3 N -0.61 -21.44 2.87 -709.92 -2.04 -23.48 16 4 C -0.13 -5.42 11.40 87.72 1.00 -4.42 16 5 C 0.24 11.52 7.89 136.36 1.08 12.60 16 6 N -0.97 -48.56 11.07 -51.02 -0.56 -49.13 16 7 S 2.43 123.46 3.78 -56.49 -0.21 123.24 16 8 O -0.89 -39.37 13.23 -126.85 -1.68 -41.05 16 9 O -1.02 -62.47 17.69 -126.85 -2.24 -64.71 16 10 C -0.94 -46.00 9.99 67.73 0.68 -45.32 16 11 H 0.15 6.63 7.81 -2.91 -0.02 6.61 16 12 C 0.07 3.09 5.46 84.65 0.46 3.56 16 13 N -0.87 -44.39 13.16 21.45 0.28 -44.11 16 14 Si 1.01 35.28 29.54 68.60 2.03 37.31 16 15 H -0.24 -8.06 7.11 99.48 0.71 -7.36 16 16 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 17 H -0.25 -7.70 7.11 99.48 0.71 -6.99 16 18 N -0.80 -36.06 6.42 -348.12 -2.23 -38.30 16 19 C 0.37 13.65 8.13 170.76 1.39 15.04 16 20 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 21 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 22 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.09 1.90 8.04 -2.39 -0.02 1.89 16 25 H 0.14 5.77 8.06 -2.92 -0.02 5.75 16 26 H 0.46 14.67 9.03 -87.92 -0.79 13.88 16 27 H 0.31 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.40 18.57 7.64 -92.71 -0.71 17.86 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.47 7.87 -2.39 -0.02 1.45 16 Total: -1.00 -72.37 276.08 -1.07 -73.44 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.33 Total: 43.65 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 5.93 Total: -16.87 kcal Atomic # 7 Polarization: -150.46 SS G_CDS: -4.56 Total: -155.02 kcal Atomic # 8 Polarization: -101.84 SS G_CDS: -3.92 Total: -105.76 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 123.46 SS G_CDS: -0.21 Total: 123.24 kcal Total: -72.37 -1.07 -73.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725658989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.633 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds