Wall clock time and date at job start Mon Mar 30 2020 03:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47072 * 2 1 4 4 C 1.28552 * 125.41995 * 115.36634 * 3 2 1 5 5 C 1.47846 * 110.21492 * 180.11816 * 4 3 2 6 6 N 1.30041 * 125.97373 * 179.82463 * 5 4 3 7 7 S 1.65601 * 120.00222 * 179.71693 * 6 5 4 8 8 O 1.52204 * 109.46826 * 299.99690 * 7 6 5 9 9 O 1.42095 * 109.47341 * 59.99986 * 7 6 5 10 10 C 1.76199 * 109.47110 * 179.97438 * 7 6 5 11 11 H 1.08009 * 120.00150 * 359.72048 * 10 7 6 12 12 C 1.37876 * 120.00184 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00355 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99771 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47174 * 89.99890 * 14 12 10 16 16 H 1.48501 * 109.47062 * 209.99841 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99640 * 14 12 10 18 18 N 1.38187 * 108.05767 * 359.55829 * 5 4 3 19 19 C 1.46558 * 125.42742 * 295.00199 * 3 2 1 20 20 H 1.09007 * 109.47175 * 299.99883 * 1 2 3 21 21 H 1.08997 * 109.47280 * 59.99369 * 1 2 3 22 22 H 1.09001 * 109.47550 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46840 * 240.00149 * 2 1 3 24 24 H 1.09004 * 109.46661 * 120.00584 * 2 1 3 25 25 H 1.08001 * 124.89464 * 359.94166 * 4 3 2 26 26 H 0.96701 * 113.99963 * 299.99774 * 8 7 6 27 27 H 0.96996 * 120.00393 * 180.02562 * 13 12 10 28 28 H 0.97002 * 127.02002 * 180.21298 * 18 5 4 29 29 H 1.08992 * 110.02626 * 60.74815 * 19 3 2 30 30 H 1.08997 * 110.02537 * 299.32250 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6898 1.9340 0.9466 5 6 3.0063 3.3353 0.5975 6 7 3.6699 4.1753 1.3358 7 16 3.9467 5.7153 0.7934 8 8 4.7392 5.6612 -0.5049 9 8 2.7050 6.3669 0.5636 10 6 4.8628 6.6088 2.0046 11 1 5.1458 6.1292 2.9300 12 6 5.2139 7.9219 1.7733 13 7 5.8972 8.5890 2.6775 14 14 4.7176 8.7539 0.1761 15 1 3.3905 9.3984 0.3452 16 1 5.7264 9.7840 -0.1796 17 1 4.6416 7.7407 -0.9069 18 7 2.4789 3.5948 -0.6532 19 6 1.8256 2.3504 -1.0823 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5140 0.8900 25 1 2.9785 1.4461 1.8658 26 1 5.6002 5.2287 -0.4224 27 1 6.1439 9.5129 2.5150 28 1 2.5292 4.4283 -1.1468 29 1 0.7617 2.5236 -1.2432 30 1 2.2874 1.9832 -1.9988 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725658990.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:51 Heat of formation + Delta-G solvation = -1.721349 kcal Electronic energy + Delta-G solvation = -16364.570405 eV Core-core repulsion = 13517.167745 eV Total energy + Delta-G solvation = -2847.402661 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70829 -38.84734 -37.20772 -36.17119 -35.44488 -33.16530 -31.35521 -28.87039 -27.31464 -25.17438 -22.41174 -21.73873 -21.20645 -20.55127 -18.91994 -18.02838 -17.18848 -16.92750 -16.36491 -16.00857 -15.65921 -15.49179 -15.10619 -14.78658 -14.48726 -14.15290 -13.71211 -13.38529 -13.18918 -13.06983 -13.02214 -12.58794 -12.46883 -12.00530 -11.79565 -11.69860 -11.55679 -10.73443 -10.18515 -9.56864 -9.18633 -7.88928 -5.79525 -0.65408 0.95631 1.03276 1.15996 1.72148 1.76820 2.21066 2.30006 2.60462 2.97553 3.05221 3.45676 4.25046 4.42144 4.45644 4.67574 4.71158 4.86902 5.03890 5.08218 5.12112 5.24674 5.40869 5.45698 5.85886 5.98057 6.18216 6.39719 6.80350 7.51135 7.75607 7.96251 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.059857 B = 0.006336 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.667394 B = 4418.464830 C = 4626.875554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.147 3.853 3 N -0.601 5.601 4 C -0.098 4.098 5 C 0.229 3.771 6 N -0.945 5.945 7 S 2.401 3.599 8 O -0.900 6.900 9 O -1.005 7.005 10 C -0.940 4.940 11 H 0.127 0.873 12 C 0.105 3.895 13 N -0.821 5.821 14 Si 0.841 3.159 15 H -0.262 1.262 16 H -0.216 1.216 17 H -0.206 1.206 18 N -0.801 5.801 19 C 0.371 3.629 20 H 0.039 0.961 21 H 0.050 0.950 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.149 0.851 26 H 0.463 0.537 27 H 0.302 0.698 28 H 0.405 0.595 29 H 0.032 0.968 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 -10.894 -8.566 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 N -0.318 5.318 4 C -0.240 4.240 5 C 0.010 3.990 6 N -0.841 5.841 7 S 2.518 3.482 8 O -0.756 6.756 9 O -0.992 6.992 10 C -1.080 5.080 11 H 0.145 0.855 12 C -0.117 4.117 13 N -0.449 5.449 14 Si 0.658 3.342 15 H -0.186 1.186 16 H -0.138 1.138 17 H -0.128 1.128 18 N -0.452 5.452 19 C 0.158 3.842 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.106 0.894 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.166 0.834 26 H 0.332 0.668 27 H 0.114 0.886 28 H 0.244 0.756 29 H 0.049 0.951 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.651 -10.199 -8.903 13.795 hybrid contribution 0.163 1.550 -0.305 1.588 sum -2.488 -8.649 -9.208 12.876 Atomic orbital electron populations 1.22192 0.96295 1.02836 1.01348 1.21274 0.93942 0.78978 1.03283 1.43471 1.59594 1.11786 1.16979 1.20775 1.16198 0.87831 0.99218 1.19398 0.99967 0.93268 0.86402 1.74701 1.56878 1.19114 1.33438 1.14616 0.77867 0.82223 0.73446 1.85960 1.44983 1.83481 1.61160 1.93283 1.41470 1.79453 1.85018 1.28897 1.53446 1.07397 1.18256 0.85505 1.25306 0.90543 0.95913 0.99900 1.69941 1.28133 1.12311 1.34513 0.87285 0.81416 0.85017 0.80500 1.18624 1.13807 1.12836 1.45743 1.65394 1.14424 1.19611 1.20866 0.94881 0.78953 0.89526 0.94152 0.93072 0.89427 0.90435 0.89401 0.83413 0.66756 0.88630 0.75560 0.95080 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.06 71.98 0.72 -2.47 16 2 C 0.15 3.15 6.93 86.38 0.60 3.75 16 3 N -0.60 -19.12 2.87 -709.92 -2.04 -21.16 16 4 C -0.10 -3.82 11.40 87.72 1.00 -2.82 16 5 C 0.23 10.25 7.89 136.36 1.08 11.32 16 6 N -0.95 -44.91 11.07 -51.03 -0.56 -45.47 16 7 S 2.40 112.24 3.28 -56.49 -0.19 112.06 16 8 O -0.90 -33.85 10.71 -126.85 -1.36 -35.20 16 9 O -1.00 -54.67 16.17 -126.85 -2.05 -56.72 16 10 C -0.94 -48.32 10.53 67.73 0.71 -47.61 16 11 H 0.13 6.95 8.06 -2.91 -0.02 6.92 16 12 C 0.10 5.31 5.47 84.65 0.46 5.77 16 13 N -0.82 -42.38 13.96 21.45 0.30 -42.08 16 14 Si 0.84 36.26 26.30 68.60 1.80 38.07 16 15 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.22 -8.00 7.11 99.48 0.71 -7.29 16 17 H -0.21 -8.46 5.17 99.48 0.51 -7.95 16 18 N -0.80 -32.27 6.42 -348.15 -2.23 -34.50 16 19 C 0.37 12.02 8.13 170.77 1.39 13.41 16 20 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 21 H 0.05 0.99 7.81 -2.39 -0.02 0.97 16 22 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 1.70 8.03 -2.38 -0.02 1.68 16 25 H 0.15 5.45 8.06 -2.91 -0.02 5.43 16 26 H 0.46 12.09 9.03 -87.93 -0.79 11.29 16 27 H 0.30 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.41 16.39 7.64 -92.71 -0.71 15.68 16 29 H 0.03 0.97 7.88 -2.39 -0.02 0.95 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.67 267.97 -0.89 -69.56 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.53 Total: 34.11 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 5.96 Total: -18.65 kcal Atomic # 7 Polarization: -138.68 SS G_CDS: -4.54 Total: -143.22 kcal Atomic # 8 Polarization: -88.52 SS G_CDS: -3.41 Total: -91.92 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 1.80 Total: 38.07 kcal Atomic # 16 Polarization: 112.24 SS G_CDS: -0.19 Total: 112.06 kcal Total: -68.67 -0.89 -69.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725658990.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.839 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds