Wall clock time and date at job start Mon Mar 30 2020 03:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.29068 * 126.38833 * 2 1 4 4 C 1.47148 * 109.78741 * 180.15501 * 3 2 1 5 5 S 1.76196 * 125.10691 * 179.78004 * 4 3 2 6 6 O 1.52198 * 109.47444 * 299.71805 * 5 4 3 7 7 O 1.42098 * 109.47204 * 59.72028 * 5 4 3 8 8 N 1.65598 * 109.47428 * 179.71782 * 5 4 3 9 9 C 1.46500 * 120.00316 * 180.02562 * 8 5 4 10 10 C 1.50706 * 109.46949 * 165.00137 * 9 8 5 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 N 1.29065 * 109.78715 * 359.51481 * 4 3 2 19 19 C 1.46850 * 126.39042 * 179.63572 * 2 1 3 20 20 H 1.08999 * 109.46937 * 270.36290 * 1 2 3 21 21 H 1.09003 * 109.46800 * 30.36202 * 1 2 3 22 22 H 1.09003 * 109.46716 * 150.35747 * 1 2 3 23 23 H 1.08007 * 125.10661 * 359.96824 * 3 2 1 24 24 H 0.96705 * 113.99858 * 300.00535 * 6 5 4 25 25 H 0.97010 * 119.99914 * 359.97438 * 8 5 4 26 26 H 1.09000 * 109.47175 * 45.00163 * 9 8 5 27 27 H 1.09001 * 109.47297 * 284.99670 * 9 8 5 28 28 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.14983 * 60.87877 * 19 2 1 30 30 H 1.08995 * 110.15605 * 299.13549 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2307 1.0390 0.0000 4 6 3.6409 0.6186 -0.0037 5 16 5.0238 1.7105 -0.0105 6 8 4.9771 2.5806 -1.2584 7 8 4.9807 2.5366 1.1448 8 7 6.4245 0.8272 -0.0056 9 6 7.7209 1.5097 -0.0094 10 6 8.8047 0.5313 0.3638 11 1 8.5525 -0.4950 0.5863 12 6 10.1176 0.9477 0.4262 13 7 11.0633 0.0940 0.7523 14 14 10.5529 2.7246 0.0489 15 1 10.5000 3.5236 1.2995 16 1 11.9224 2.7883 -0.5217 17 1 9.5823 3.2746 -0.9313 18 7 3.7126 -0.6700 0.0043 19 6 2.3363 -1.1821 0.0075 20 1 -0.3633 0.0065 1.0276 21 1 -0.3633 0.8868 -0.5195 22 1 -0.3633 -0.8932 -0.5083 23 1 1.8879 2.0632 -0.0005 24 1 5.0030 2.0821 -2.0867 25 1 6.3867 -0.1421 0.0005 26 1 7.7039 2.3259 0.7128 27 1 7.9185 1.9087 -1.0043 28 1 11.9870 0.3870 0.7966 29 1 2.1581 -1.7855 -0.8826 30 1 2.1581 -1.7743 0.9050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659099.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:21 Heat of formation + Delta-G solvation = 37.642683 kcal Electronic energy + Delta-G solvation = -15986.201191 eV Core-core repulsion = 13140.505483 eV Total energy + Delta-G solvation = -2845.695708 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55813 -36.79943 -35.21658 -34.28601 -33.85019 -31.92236 -28.70290 -27.58377 -26.92132 -21.97263 -21.82317 -20.74158 -19.80245 -17.77067 -17.53930 -16.22898 -16.12951 -15.54053 -15.24323 -14.55621 -14.29135 -13.59718 -13.52607 -13.40316 -12.95808 -12.69876 -12.61424 -12.28139 -12.01252 -11.35578 -10.99873 -10.80851 -10.74962 -10.43850 -10.09473 -9.86100 -9.54917 -9.33337 -8.65529 -8.09813 -6.06044 -4.84857 -4.04908 0.01387 2.43492 2.68124 3.27768 3.33753 3.40100 3.43235 3.78796 4.40607 4.43938 4.67779 4.78718 4.89415 5.06515 5.08956 5.27914 5.28659 5.42827 6.06627 6.33075 6.44467 6.76610 7.00626 7.10946 7.31457 7.62391 8.00420 8.35763 8.55468 8.99533 9.54411 11.06919 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.047926 B = 0.005718 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.089357 B = 4895.795150 C = 5279.792005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.532 5.532 3 C 0.113 3.887 4 C -0.360 4.360 5 S 2.201 3.799 6 O -0.909 6.909 7 O -0.941 6.941 8 N -1.064 6.064 9 C 0.215 3.785 10 C -0.524 4.524 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.873 3.127 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.264 1.264 18 N -0.508 5.508 19 C 0.219 3.781 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.172 0.828 24 H 0.433 0.567 25 H 0.411 0.589 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.265 0.735 29 H 0.074 0.926 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.463 0.270 -6.175 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.235 5.235 3 C -0.066 4.066 4 C -0.601 4.601 5 S 2.307 3.693 6 O -0.759 6.759 7 O -0.924 6.924 8 N -0.821 5.821 9 C 0.089 3.911 10 C -0.563 4.563 11 H 0.100 0.900 12 C -0.132 4.132 13 N -0.535 5.535 14 Si 0.700 3.300 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.189 1.189 18 N -0.256 5.256 19 C 0.005 3.995 20 H 0.086 0.914 21 H 0.101 0.899 22 H 0.103 0.897 23 H 0.189 0.811 24 H 0.295 0.705 25 H 0.244 0.756 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.504 0.942 -5.596 22.240 hybrid contribution -0.507 0.431 -0.190 0.692 sum -22.011 1.373 -5.785 22.800 Atomic orbital electron populations 1.21876 0.76195 1.04328 1.03104 1.46229 1.06999 1.09212 1.61053 1.24640 0.90795 0.93852 0.97333 1.37432 1.08091 1.05686 1.08935 1.40957 0.75223 0.75686 0.77471 1.85639 1.92984 1.63641 1.33613 1.93146 1.85580 1.66679 1.46983 1.54961 1.18507 1.18315 1.90311 1.19392 0.82559 0.93905 0.95207 1.21214 0.90133 0.97768 1.47181 0.89986 1.24901 0.96256 0.97467 0.94543 1.69897 1.00706 1.34673 1.48247 0.86887 0.78018 0.85629 0.79452 1.19893 1.20929 1.18910 1.74855 1.13367 1.07403 1.29942 1.23947 0.85509 0.88737 1.01343 0.91358 0.89901 0.89660 0.81129 0.70505 0.75596 0.96849 0.97023 0.92528 0.90885 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.22 59.85 0.67 1.07 16 2 N -0.53 -5.03 3.25 -183.59 -0.60 -5.63 16 3 C 0.11 1.28 11.50 -15.10 -0.17 1.11 16 4 C -0.36 -5.38 7.48 -15.10 -0.11 -5.49 16 5 S 2.20 39.62 5.55 -107.50 -0.60 39.02 16 6 O -0.91 -13.83 13.56 -58.38 -0.79 -14.62 16 7 O -0.94 -22.07 18.14 -58.38 -1.06 -23.13 16 8 N -1.06 -22.49 6.07 -11.65 -0.07 -22.56 16 9 C 0.22 5.49 5.13 -5.19 -0.03 5.46 16 10 C -0.52 -15.32 9.83 -34.44 -0.34 -15.66 16 11 H 0.08 2.54 7.90 -52.49 -0.41 2.12 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 14 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 15 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 18 N -0.51 -7.90 11.73 -61.13 -0.72 -8.62 16 19 C 0.22 2.55 8.46 -62.98 -0.53 2.02 16 20 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 21 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 22 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 24 H 0.43 4.10 9.03 67.38 0.61 4.71 16 25 H 0.41 8.39 8.44 -34.47 -0.29 8.09 16 26 H 0.01 0.37 7.57 -51.93 -0.39 -0.03 16 27 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -39.47 276.78 -6.73 -46.21 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.57 Total: 4.26 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.61 Total: -9.48 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.61 Total: -63.90 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.85 Total: -37.75 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 16 Polarization: 39.62 SS G_CDS: -0.60 Total: 39.02 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -39.47 -6.73 -46.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659099.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.849 kcal (2) G-P(sol) polarization free energy of solvation -39.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds