Wall clock time and date at job start Mon Mar 30 2020 03:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.29068 * 126.38833 * 2 1 4 4 C 1.47148 * 109.78741 * 180.15501 * 3 2 1 5 5 S 1.76196 * 125.10691 * 179.78004 * 4 3 2 6 6 O 1.52198 * 109.47444 * 299.71805 * 5 4 3 7 7 O 1.42098 * 109.47204 * 59.72028 * 5 4 3 8 8 N 1.65598 * 109.47428 * 179.71782 * 5 4 3 9 9 C 1.46500 * 120.00316 * 180.02562 * 8 5 4 10 10 C 1.50706 * 109.46949 * 165.00137 * 9 8 5 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 N 1.29065 * 109.78715 * 359.51481 * 4 3 2 19 19 C 1.46850 * 126.39042 * 179.63572 * 2 1 3 20 20 H 1.08999 * 109.46937 * 270.36290 * 1 2 3 21 21 H 1.09003 * 109.46800 * 30.36202 * 1 2 3 22 22 H 1.09003 * 109.46716 * 150.35747 * 1 2 3 23 23 H 1.08007 * 125.10661 * 359.96824 * 3 2 1 24 24 H 0.96705 * 113.99858 * 300.00535 * 6 5 4 25 25 H 0.97010 * 119.99914 * 359.97438 * 8 5 4 26 26 H 1.09000 * 109.47175 * 45.00163 * 9 8 5 27 27 H 1.09001 * 109.47297 * 284.99670 * 9 8 5 28 28 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.14983 * 60.87877 * 19 2 1 30 30 H 1.08995 * 110.15605 * 299.13549 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2307 1.0390 0.0000 4 6 3.6409 0.6186 -0.0037 5 16 5.0238 1.7105 -0.0105 6 8 4.9771 2.5806 -1.2584 7 8 4.9807 2.5366 1.1448 8 7 6.4245 0.8272 -0.0056 9 6 7.7209 1.5097 -0.0094 10 6 8.8047 0.5313 0.3638 11 1 8.5525 -0.4950 0.5863 12 6 10.1176 0.9477 0.4262 13 7 11.0633 0.0940 0.7523 14 14 10.5529 2.7246 0.0489 15 1 10.5000 3.5236 1.2995 16 1 11.9224 2.7883 -0.5217 17 1 9.5823 3.2746 -0.9313 18 7 3.7126 -0.6700 0.0043 19 6 2.3363 -1.1821 0.0075 20 1 -0.3633 0.0065 1.0276 21 1 -0.3633 0.8868 -0.5195 22 1 -0.3633 -0.8932 -0.5083 23 1 1.8879 2.0632 -0.0005 24 1 5.0030 2.0821 -2.0867 25 1 6.3867 -0.1421 0.0005 26 1 7.7039 2.3259 0.7128 27 1 7.9185 1.9087 -1.0043 28 1 11.9870 0.3870 0.7966 29 1 2.1581 -1.7855 -0.8826 30 1 2.1581 -1.7743 0.9050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659099.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:21 Heat of formation + Delta-G solvation = -1.400481 kcal Electronic energy + Delta-G solvation = -15987.894229 eV Core-core repulsion = 13140.505483 eV Total energy + Delta-G solvation = -2847.388747 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96915 -37.23492 -36.13307 -35.93237 -35.05986 -33.82253 -29.90939 -28.81156 -28.30669 -23.67368 -22.92380 -21.90272 -20.40863 -19.35449 -18.56229 -17.64519 -17.21173 -16.81379 -16.18344 -16.11754 -15.40072 -15.08988 -14.62177 -14.44664 -14.27864 -14.22033 -13.90688 -13.34500 -13.11494 -12.74712 -12.52999 -12.05149 -11.98048 -11.82648 -11.68933 -11.43245 -11.21857 -10.82793 -10.72398 -9.35909 -8.30112 -6.32565 -5.89727 -0.85829 1.32530 1.35374 1.36677 1.47946 1.54279 2.35205 2.40695 2.92581 3.03908 3.34550 3.87285 3.96873 4.14513 4.25581 4.27551 4.47452 4.74298 4.76300 4.78960 4.98598 5.24418 5.44609 5.57773 5.73996 6.33235 6.58127 6.67030 6.79349 7.10260 7.35629 8.86598 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.047926 B = 0.005718 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.089357 B = 4895.795150 C = 5279.792005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.477 5.477 3 C 0.209 3.791 4 C -0.351 4.351 5 S 2.054 3.946 6 O -0.937 6.937 7 O -1.032 7.032 8 N -1.066 6.066 9 C 0.223 3.777 10 C -0.532 4.532 11 H 0.045 0.955 12 C 0.011 3.989 13 N -0.943 5.943 14 Si 0.939 3.061 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.252 1.252 18 N -0.486 5.486 19 C 0.168 3.832 20 H 0.098 0.902 21 H 0.119 0.881 22 H 0.119 0.881 23 H 0.225 0.775 24 H 0.435 0.565 25 H 0.394 0.606 26 H -0.019 1.019 27 H 0.011 0.989 28 H 0.269 0.731 29 H 0.133 0.867 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.686 -1.254 -7.199 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.165 5.165 3 C 0.024 3.976 4 C -0.596 4.596 5 S 2.146 3.854 6 O -0.789 6.789 7 O -1.016 7.016 8 N -0.816 5.816 9 C 0.094 3.906 10 C -0.571 4.571 11 H 0.063 0.937 12 C -0.187 4.187 13 N -0.584 5.584 14 Si 0.762 3.238 15 H -0.199 1.199 16 H -0.191 1.191 17 H -0.176 1.176 18 N -0.225 5.225 19 C -0.045 4.045 20 H 0.116 0.884 21 H 0.137 0.863 22 H 0.138 0.862 23 H 0.241 0.759 24 H 0.298 0.702 25 H 0.224 0.776 26 H -0.001 1.001 27 H 0.029 0.971 28 H 0.077 0.923 29 H 0.150 0.850 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -29.022 -0.795 -6.624 29.779 hybrid contribution 0.120 0.131 0.279 0.330 sum -28.903 -0.664 -6.346 29.599 Atomic orbital electron populations 1.22781 0.71077 1.08104 1.06130 1.47510 1.10411 1.08924 1.49629 1.26431 0.90650 0.96672 0.83867 1.39953 1.11200 1.05676 1.02815 1.58973 0.74262 0.75688 0.76459 1.85476 1.92389 1.66304 1.34749 1.92779 1.86264 1.69968 1.52589 1.55846 1.17744 1.17402 1.90600 1.18970 0.85461 0.92486 0.93679 1.21640 0.91968 0.97164 1.46294 0.93678 1.25846 0.96198 1.02227 0.94461 1.70040 1.01203 1.36929 1.50210 0.85840 0.78452 0.79919 0.79581 1.19937 1.19061 1.17598 1.74902 1.16255 1.09401 1.21980 1.24903 0.84179 0.89925 1.05519 0.88378 0.86262 0.86244 0.75910 0.70156 0.77633 1.00091 0.97086 0.92252 0.85017 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.16 11.22 127.77 1.43 1.28 16 2 N -0.48 -3.98 3.25 -734.74 -2.39 -6.37 16 3 C 0.21 3.07 11.50 87.44 1.01 4.08 16 4 C -0.35 -9.59 7.48 87.44 0.65 -8.94 16 5 S 2.05 82.52 5.55 -56.49 -0.31 82.20 16 6 O -0.94 -32.90 13.56 -126.85 -1.72 -34.62 16 7 O -1.03 -54.60 18.14 -126.85 -2.30 -56.90 16 8 N -1.07 -51.45 6.07 -190.78 -1.16 -52.61 16 9 C 0.22 12.82 5.13 85.63 0.44 13.26 16 10 C -0.53 -34.35 9.83 25.60 0.25 -34.10 16 11 H 0.04 3.11 7.90 -2.91 -0.02 3.09 16 12 C 0.01 0.68 5.47 84.66 0.46 1.14 16 13 N -0.94 -62.55 13.96 21.45 0.30 -62.25 16 14 Si 0.94 49.11 27.47 68.60 1.88 51.00 16 15 H -0.27 -14.18 7.11 99.48 0.71 -13.48 16 16 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.25 -12.63 6.54 99.48 0.65 -11.98 16 18 N -0.49 -13.06 11.73 -347.32 -4.08 -17.14 16 19 C 0.17 2.36 8.46 170.69 1.44 3.80 16 20 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 21 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 22 H 0.12 -0.75 8.14 -2.39 -0.02 -0.77 16 23 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 24 H 0.44 10.29 9.03 -87.93 -0.79 9.49 16 25 H 0.39 18.38 8.44 -96.74 -0.82 17.56 16 26 H -0.02 -1.15 7.57 -2.39 -0.02 -1.17 16 27 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 28 H 0.27 16.46 8.31 -92.70 -0.77 15.69 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -101.68 276.78 -4.58 -106.26 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -0.49 Total: 9.90 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 5.69 Total: -19.48 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -7.32 Total: -138.37 kcal Atomic # 8 Polarization: -87.49 SS G_CDS: -4.02 Total: -91.52 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.88 Total: 51.00 kcal Atomic # 16 Polarization: 82.52 SS G_CDS: -0.31 Total: 82.20 kcal Total: -101.68 -4.58 -106.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659099.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.861 kcal (2) G-P(sol) polarization free energy of solvation -101.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds