Wall clock time and date at job start Mon Mar 30 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.29053 * 126.38580 * 2 1 4 4 C 1.47154 * 109.78415 * 180.26306 * 3 2 1 5 5 S 1.76201 * 125.10562 * 179.97438 * 4 3 2 6 6 O 1.52202 * 109.47373 * 60.00468 * 5 4 3 7 7 O 1.42100 * 109.47205 * 299.99936 * 5 4 3 8 8 N 1.65599 * 109.47174 * 180.02562 * 5 4 3 9 9 C 1.46500 * 120.00200 * 180.02562 * 8 5 4 10 10 C 1.50704 * 109.47473 * 164.99364 * 9 8 5 11 11 H 1.08002 * 119.99799 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99883 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47052 * 90.00058 * 14 12 10 16 16 H 1.48501 * 109.47025 * 210.00089 * 14 12 10 17 17 H 1.48493 * 109.46996 * 329.99809 * 14 12 10 18 18 N 1.29055 * 109.79163 * 0.02562 * 4 3 2 19 19 C 1.46855 * 107.22046 * 359.97438 * 18 4 3 20 20 H 1.09006 * 109.47025 * 269.68641 * 1 2 3 21 21 H 1.08999 * 109.47205 * 29.68259 * 1 2 3 22 22 H 1.09001 * 109.47426 * 149.68999 * 1 2 3 23 23 H 1.07999 * 125.11108 * 0.22038 * 3 2 1 24 24 H 0.96693 * 113.99656 * 59.99517 * 6 5 4 25 25 H 0.97000 * 120.00196 * 359.97438 * 8 5 4 26 26 H 1.08994 * 109.47369 * 284.99917 * 9 8 5 27 27 H 1.09002 * 109.47117 * 44.99950 * 9 8 5 28 28 H 0.96994 * 120.00161 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.15051 * 240.87665 * 19 18 4 30 30 H 1.08997 * 110.21277 * 119.16157 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2306 1.0389 0.0000 4 6 3.6408 0.6185 -0.0064 5 16 5.0237 1.7104 -0.0091 6 8 4.9821 2.5850 1.2358 7 8 4.9759 2.5323 -1.1673 8 7 6.4244 0.8271 -0.0172 9 6 7.7207 1.5095 -0.0202 10 6 8.8060 0.5280 0.3406 11 1 8.5552 -0.5012 0.5506 12 6 10.1191 0.9439 0.4015 13 7 11.0663 0.0872 0.7158 14 14 10.5530 2.7240 0.0375 15 1 10.5050 3.5122 1.2951 16 1 11.9204 2.7925 -0.5377 17 1 9.5787 3.2822 -0.9342 18 7 3.7126 -0.6700 -0.0107 19 6 2.3362 -1.1822 -0.0068 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 0.8928 -0.5089 22 1 -0.3634 -0.8872 -0.5186 23 1 1.8878 2.0631 0.0034 24 1 5.0114 2.0895 2.0656 25 1 6.3866 -0.1422 -0.0193 26 1 7.9146 1.9171 -1.0123 27 1 7.7066 2.3196 0.7090 28 1 11.9900 0.3798 0.7590 29 1 2.1616 -1.7827 0.8860 30 1 2.1535 -1.7779 -0.9011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659100.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:23 Heat of formation + Delta-G solvation = 37.033445 kcal Electronic energy + Delta-G solvation = -15988.834921 eV Core-core repulsion = 13143.112795 eV Total energy + Delta-G solvation = -2845.722127 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54910 -36.79958 -35.23411 -34.29866 -33.84352 -31.94136 -28.69441 -27.57953 -26.93537 -21.97585 -21.81997 -20.73750 -19.79895 -17.78898 -17.53404 -16.21353 -16.13020 -15.53129 -15.26690 -14.56372 -14.29056 -13.59531 -13.51409 -13.40119 -12.96210 -12.67334 -12.64087 -12.33764 -11.98370 -11.36869 -10.99151 -10.84049 -10.77263 -10.40142 -10.08953 -9.88416 -9.54921 -9.35894 -8.67114 -8.09636 -6.08415 -4.84649 -4.07669 0.02188 2.43885 2.69000 3.26796 3.31937 3.39419 3.46412 3.78816 4.41203 4.42965 4.67840 4.79590 4.90142 5.07144 5.07934 5.25843 5.29263 5.43265 6.07661 6.33980 6.43040 6.75610 7.01583 7.16314 7.30224 7.60258 8.01255 8.35091 8.52971 8.96790 9.52343 11.04289 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.048065 B = 0.005715 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.408177 B = 4898.525373 C = 5274.669190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.532 5.532 3 C 0.112 3.888 4 C -0.360 4.360 5 S 2.204 3.796 6 O -0.908 6.908 7 O -0.943 6.943 8 N -1.065 6.065 9 C 0.217 3.783 10 C -0.525 4.525 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.870 3.130 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.262 1.262 18 N -0.510 5.510 19 C 0.220 3.780 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.171 0.829 24 H 0.435 0.565 25 H 0.411 0.589 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.073 0.927 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 0.341 2.266 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.235 5.235 3 C -0.068 4.068 4 C -0.601 4.601 5 S 2.310 3.690 6 O -0.758 6.758 7 O -0.927 6.927 8 N -0.822 5.822 9 C 0.091 3.909 10 C -0.564 4.564 11 H 0.101 0.899 12 C -0.131 4.131 13 N -0.535 5.535 14 Si 0.697 3.303 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.187 1.187 18 N -0.257 5.257 19 C 0.006 3.994 20 H 0.091 0.909 21 H 0.101 0.899 22 H 0.098 0.902 23 H 0.188 0.812 24 H 0.297 0.703 25 H 0.244 0.756 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.432 1.011 1.722 21.525 hybrid contribution -0.494 0.431 -0.008 0.656 sum -21.927 1.442 1.714 22.041 Atomic orbital electron populations 1.21878 0.76210 1.04210 1.03184 1.46212 1.06976 1.09201 1.61145 1.24647 0.90840 0.93834 0.97432 1.37470 1.07804 1.05714 1.09158 1.40791 0.75189 0.75635 0.77399 1.85603 1.92956 1.63605 1.33591 1.93138 1.85646 1.66935 1.46934 1.54941 1.18505 1.18332 1.90404 1.19368 0.82506 0.93544 0.95521 1.21205 0.90123 0.97485 1.47571 0.89943 1.24887 0.96228 0.97501 0.94461 1.69891 1.00657 1.34586 1.48337 0.86922 0.78332 0.85608 0.79441 1.19945 1.20846 1.18674 1.74836 1.13379 1.07384 1.30132 1.23928 0.85469 0.88729 1.01314 0.90851 0.89936 0.90192 0.81152 0.70255 0.75563 0.96848 0.97186 0.92498 0.90928 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.22 59.85 0.67 1.07 16 2 N -0.53 -5.06 3.25 -183.59 -0.60 -5.66 16 3 C 0.11 1.27 11.50 -15.10 -0.17 1.09 16 4 C -0.36 -5.38 7.48 -15.10 -0.11 -5.50 16 5 S 2.20 39.64 5.56 -107.50 -0.60 39.04 16 6 O -0.91 -14.11 13.56 -58.38 -0.79 -14.90 16 7 O -0.94 -21.79 18.14 -58.38 -1.06 -22.85 16 8 N -1.06 -22.49 6.07 -11.66 -0.07 -22.56 16 9 C 0.22 5.52 5.13 -5.19 -0.03 5.49 16 10 C -0.52 -15.07 9.83 -34.44 -0.34 -15.40 16 11 H 0.08 2.49 7.90 -52.49 -0.41 2.07 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 14 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 18 N -0.51 -7.95 11.73 -61.13 -0.72 -8.66 16 19 C 0.22 2.57 8.46 -62.98 -0.53 2.04 16 20 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 21 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 22 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 24 H 0.43 4.41 9.03 67.38 0.61 5.02 16 25 H 0.41 8.38 8.43 -34.47 -0.29 8.09 16 26 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -38.82 276.78 -6.73 -45.56 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.57 Total: 4.43 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.61 Total: -9.19 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.61 Total: -63.60 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.85 Total: -37.75 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 16 Polarization: 39.64 SS G_CDS: -0.60 Total: 39.04 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -38.82 -6.73 -45.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659100.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.592 kcal (2) G-P(sol) polarization free energy of solvation -38.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds