Wall clock time and date at job start Mon Mar 30 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.29053 * 126.38580 * 2 1 4 4 C 1.47154 * 109.78415 * 180.26306 * 3 2 1 5 5 S 1.76201 * 125.10562 * 179.97438 * 4 3 2 6 6 O 1.52202 * 109.47373 * 60.00468 * 5 4 3 7 7 O 1.42100 * 109.47205 * 299.99936 * 5 4 3 8 8 N 1.65599 * 109.47174 * 180.02562 * 5 4 3 9 9 C 1.46500 * 120.00200 * 180.02562 * 8 5 4 10 10 C 1.50704 * 109.47473 * 164.99364 * 9 8 5 11 11 H 1.08002 * 119.99799 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99883 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47052 * 90.00058 * 14 12 10 16 16 H 1.48501 * 109.47025 * 210.00089 * 14 12 10 17 17 H 1.48493 * 109.46996 * 329.99809 * 14 12 10 18 18 N 1.29055 * 109.79163 * 0.02562 * 4 3 2 19 19 C 1.46855 * 107.22046 * 359.97438 * 18 4 3 20 20 H 1.09006 * 109.47025 * 269.68641 * 1 2 3 21 21 H 1.08999 * 109.47205 * 29.68259 * 1 2 3 22 22 H 1.09001 * 109.47426 * 149.68999 * 1 2 3 23 23 H 1.07999 * 125.11108 * 0.22038 * 3 2 1 24 24 H 0.96693 * 113.99656 * 59.99517 * 6 5 4 25 25 H 0.97000 * 120.00196 * 359.97438 * 8 5 4 26 26 H 1.08994 * 109.47369 * 284.99917 * 9 8 5 27 27 H 1.09002 * 109.47117 * 44.99950 * 9 8 5 28 28 H 0.96994 * 120.00161 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.15051 * 240.87665 * 19 18 4 30 30 H 1.08997 * 110.21277 * 119.16157 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2306 1.0389 0.0000 4 6 3.6408 0.6185 -0.0064 5 16 5.0237 1.7104 -0.0091 6 8 4.9821 2.5850 1.2358 7 8 4.9759 2.5323 -1.1673 8 7 6.4244 0.8271 -0.0172 9 6 7.7207 1.5095 -0.0202 10 6 8.8060 0.5280 0.3406 11 1 8.5552 -0.5012 0.5506 12 6 10.1191 0.9439 0.4015 13 7 11.0663 0.0872 0.7158 14 14 10.5530 2.7240 0.0375 15 1 10.5050 3.5122 1.2951 16 1 11.9204 2.7925 -0.5377 17 1 9.5787 3.2822 -0.9342 18 7 3.7126 -0.6700 -0.0107 19 6 2.3362 -1.1822 -0.0068 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 0.8928 -0.5089 22 1 -0.3634 -0.8872 -0.5186 23 1 1.8878 2.0631 0.0034 24 1 5.0114 2.0895 2.0656 25 1 6.3866 -0.1422 -0.0193 26 1 7.9146 1.9171 -1.0123 27 1 7.7066 2.3196 0.7090 28 1 11.9900 0.3798 0.7590 29 1 2.1616 -1.7827 0.8860 30 1 2.1535 -1.7779 -0.9011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659100.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:23 Heat of formation + Delta-G solvation = -1.227229 kcal Electronic energy + Delta-G solvation = -15990.494028 eV Core-core repulsion = 13143.112795 eV Total energy + Delta-G solvation = -2847.381234 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.96489 -37.25764 -36.13631 -35.94037 -35.05616 -33.82395 -29.90510 -28.81348 -28.30400 -23.67222 -22.92135 -21.89976 -20.41614 -19.36629 -18.56277 -17.62443 -17.20939 -16.81782 -16.24983 -16.07386 -15.41327 -15.09733 -14.61839 -14.48446 -14.26233 -14.20321 -13.92141 -13.35901 -13.12469 -12.70030 -12.60021 -12.05570 -11.97590 -11.84193 -11.69088 -11.43585 -11.20930 -10.81678 -10.72011 -9.37633 -8.29932 -6.31989 -5.90073 -0.85259 1.32166 1.33815 1.37031 1.49320 1.54546 2.35110 2.39046 2.91759 3.04407 3.34475 3.87397 3.95910 4.13893 4.25970 4.27959 4.48836 4.74461 4.75643 4.78817 4.98642 5.22887 5.44264 5.57020 5.74505 6.31916 6.57672 6.67462 6.78960 7.09956 7.36265 8.86344 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.048065 B = 0.005715 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.408177 B = 4898.525373 C = 5274.669190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.477 5.477 3 C 0.209 3.791 4 C -0.351 4.351 5 S 2.055 3.945 6 O -0.936 6.936 7 O -1.031 7.031 8 N -1.066 6.066 9 C 0.225 3.775 10 C -0.527 4.527 11 H 0.051 0.949 12 C 0.015 3.985 13 N -0.940 5.940 14 Si 0.934 3.066 15 H -0.257 1.257 16 H -0.270 1.270 17 H -0.270 1.270 18 N -0.488 5.488 19 C 0.169 3.831 20 H 0.112 0.888 21 H 0.114 0.886 22 H 0.110 0.890 23 H 0.225 0.775 24 H 0.435 0.565 25 H 0.395 0.605 26 H -0.024 1.024 27 H 0.006 0.994 28 H 0.269 0.731 29 H 0.130 0.870 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.616 -1.286 2.620 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.165 5.165 3 C 0.023 3.977 4 C -0.596 4.596 5 S 2.147 3.853 6 O -0.789 6.789 7 O -1.015 7.015 8 N -0.816 5.816 9 C 0.095 3.905 10 C -0.566 4.566 11 H 0.069 0.931 12 C -0.183 4.183 13 N -0.581 5.581 14 Si 0.757 3.243 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.194 1.194 18 N -0.227 5.227 19 C -0.044 4.044 20 H 0.130 0.870 21 H 0.133 0.867 22 H 0.128 0.872 23 H 0.241 0.759 24 H 0.299 0.701 25 H 0.224 0.776 26 H -0.006 1.006 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.950 -0.824 2.079 29.037 hybrid contribution 0.123 0.169 -0.221 0.304 sum -28.827 -0.655 1.858 28.894 Atomic orbital electron populations 1.22780 0.71090 1.07546 1.06666 1.47495 1.10398 1.08929 1.49689 1.26441 0.90694 0.96652 0.83877 1.39989 1.10903 1.05689 1.03060 1.58920 0.74252 0.75690 0.76398 1.85450 1.92398 1.66343 1.34663 1.92774 1.86261 1.70085 1.52365 1.55814 1.17716 1.17436 1.90660 1.18918 0.85642 0.93046 0.92855 1.21567 0.91667 0.96960 1.46401 0.93063 1.25756 0.96239 1.01895 0.94445 1.70021 1.01119 1.36646 1.50308 0.85914 0.77953 0.80600 0.79792 1.18161 1.19479 1.19448 1.74885 1.16230 1.09379 1.22226 1.24889 0.84146 0.89910 1.05488 0.87002 0.86737 0.87169 0.75911 0.70118 0.77585 1.00588 0.97611 0.92220 0.85309 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.15 11.22 127.77 1.43 1.28 16 2 N -0.48 -4.01 3.25 -734.75 -2.39 -6.40 16 3 C 0.21 3.07 11.50 87.44 1.01 4.08 16 4 C -0.35 -9.60 7.48 87.44 0.65 -8.95 16 5 S 2.05 82.64 5.56 -56.49 -0.31 82.33 16 6 O -0.94 -33.74 13.56 -126.85 -1.72 -35.46 16 7 O -1.03 -53.70 18.14 -126.85 -2.30 -56.00 16 8 N -1.07 -51.54 6.07 -190.79 -1.16 -52.70 16 9 C 0.22 12.95 5.13 85.63 0.44 13.39 16 10 C -0.53 -33.39 9.83 25.60 0.25 -33.14 16 11 H 0.05 3.43 7.90 -2.91 -0.02 3.41 16 12 C 0.01 0.94 5.47 84.65 0.46 1.40 16 13 N -0.94 -61.32 13.96 21.45 0.30 -61.02 16 14 Si 0.93 48.95 27.47 68.60 1.88 50.83 16 15 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.27 -13.34 7.11 99.48 0.71 -12.64 16 17 H -0.27 -14.40 6.54 99.48 0.65 -13.75 16 18 N -0.49 -13.13 11.73 -347.30 -4.07 -17.21 16 19 C 0.17 2.39 8.46 170.69 1.44 3.83 16 20 H 0.11 -0.64 8.14 -2.38 -0.02 -0.66 16 21 H 0.11 -0.63 8.13 -2.39 -0.02 -0.65 16 22 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 23 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 24 H 0.44 11.04 9.03 -87.94 -0.79 10.25 16 25 H 0.39 18.38 8.43 -96.74 -0.82 17.57 16 26 H -0.02 -1.46 7.20 -2.39 -0.02 -1.48 16 27 H 0.01 0.34 7.57 -2.39 -0.02 0.33 16 28 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 29 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -99.58 276.78 -4.58 -104.16 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -0.49 Total: 9.57 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 5.69 Total: -18.10 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -7.32 Total: -137.33 kcal Atomic # 8 Polarization: -87.44 SS G_CDS: -4.02 Total: -91.46 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.88 Total: 50.83 kcal Atomic # 16 Polarization: 82.64 SS G_CDS: -0.31 Total: 82.33 kcal Total: -99.58 -4.58 -104.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659100.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.931 kcal (2) G-P(sol) polarization free energy of solvation -99.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds