Wall clock time and date at job start Mon Mar 30 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46941 * 2 1 4 4 N 1.27945 * 119.99975 * 235.00134 * 3 2 1 5 5 Si 1.86806 * 119.99833 * 55.00294 * 3 2 1 6 6 H 1.48499 * 109.46955 * 90.00035 * 5 3 2 7 7 H 1.48499 * 109.46927 * 210.00243 * 5 3 2 8 8 H 1.48504 * 109.46907 * 329.99704 * 5 3 2 9 9 S 1.81403 * 109.47137 * 240.00517 * 2 1 3 10 10 O 1.52192 * 108.33313 * 57.78128 * 9 2 1 11 11 O 1.42101 * 114.64963 * 178.89438 * 9 2 1 12 12 N 1.65598 * 108.33021 * 299.99326 * 9 2 1 13 13 N 1.23271 * 122.50101 * 0.03092 * 12 9 2 14 14 C 1.47311 * 107.95387 * 179.97438 * 13 12 9 15 15 H 1.08994 * 110.75238 * 241.49060 * 14 13 12 16 16 C 1.53006 * 110.74906 * 118.32112 * 14 13 12 17 17 C 1.51928 * 102.95509 * 359.90776 * 14 13 12 18 18 N 1.37144 * 128.19690 * 180.02562 * 17 14 13 19 19 C 1.33558 * 122.50372 * 179.97438 * 12 9 2 20 20 H 1.08999 * 109.46665 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47134 * 299.99606 * 1 2 3 22 22 H 1.08993 * 109.47436 * 59.99640 * 1 2 3 23 23 H 1.08994 * 109.47816 * 119.99979 * 2 1 3 24 24 H 0.97004 * 119.99488 * 179.97438 * 4 3 2 25 25 H 0.96690 * 114.00439 * 304.93918 * 10 9 2 26 26 H 1.09001 * 109.47002 * 63.91488 * 16 14 13 27 27 H 1.08993 * 109.46955 * 183.91925 * 16 14 13 28 28 H 1.09000 * 109.47050 * 303.91754 * 16 14 13 29 29 H 0.97002 * 120.00468 * 359.97438 * 18 17 14 30 30 H 0.97005 * 119.99230 * 180.02562 * 18 17 14 31 31 H 1.08005 * 124.66738 * 0.05509 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.8447 1.8122 -0.9077 5 14 1.4688 2.6107 1.3253 6 1 2.4008 2.5437 2.4794 7 1 1.4565 3.9912 0.7783 8 1 0.1009 2.2430 1.7715 9 16 2.1347 -0.8550 -1.4812 10 8 1.5680 -0.1505 -2.7055 11 8 3.5496 -0.8976 -1.6048 12 7 1.5674 -2.4105 -1.4527 13 7 0.8570 -2.8399 -0.5414 14 6 0.5401 -4.2477 -0.8374 15 1 -0.5349 -4.3855 -0.9533 16 6 1.0877 -5.1680 0.2554 17 6 1.2586 -4.4890 -2.1541 18 7 1.3042 -5.6410 -2.8967 19 6 1.8445 -3.2933 -2.4159 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 0.8899 24 1 3.1677 2.7269 -0.9078 25 1 0.6040 -0.0760 -2.7054 26 1 0.5899 -4.9470 1.1996 27 1 0.9033 -6.2067 -0.0183 28 1 2.1601 -5.0057 0.3634 29 1 0.8370 -6.4342 -2.5907 30 1 1.8042 -5.6629 -3.7277 31 1 2.4509 -3.0842 -3.2849 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:23 Heat of formation + Delta-G solvation = 61.874347 kcal Electronic energy + Delta-G solvation = -17352.882995 eV Core-core repulsion = 14494.582311 eV Total energy + Delta-G solvation = -2858.300683 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.48132 -37.37686 -37.18234 -36.79180 -35.83521 -33.71822 -32.64432 -30.69677 -27.86197 -25.01383 -22.86630 -22.49819 -20.67476 -20.22246 -19.74276 -18.04457 -17.83285 -17.52713 -17.22532 -16.38234 -15.84439 -15.77118 -15.13963 -14.49287 -14.29085 -14.19474 -13.93949 -13.53947 -13.37803 -13.30374 -12.97521 -12.67992 -12.55064 -12.40158 -12.19325 -11.93384 -11.82160 -11.62161 -11.07394 -10.59472 -9.46509 -9.22698 -6.51188 -0.82622 1.08449 1.16736 1.32799 1.55710 1.75619 1.92889 2.02785 2.20762 2.44214 2.80616 3.29948 3.58853 3.72889 3.91706 3.94551 4.13771 4.18362 4.36306 4.53925 4.63019 4.74583 4.83829 4.94683 5.00677 5.31198 5.48058 5.60609 5.70610 5.99951 6.32302 6.72391 7.14873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.523 4.523 3 C 0.026 3.974 4 N -0.645 5.645 5 Si 0.911 3.089 6 H -0.243 1.243 7 H -0.252 1.252 8 H -0.228 1.228 9 S 1.810 4.190 10 O -0.885 6.885 11 O -0.901 6.901 12 N -0.279 5.279 13 N -0.193 5.193 14 C 0.000 4.000 15 H 0.147 0.853 16 C -0.119 4.119 17 C 0.198 3.802 18 N -0.803 5.803 19 C -0.200 4.200 20 H 0.082 0.918 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.121 0.879 24 H 0.338 0.662 25 H 0.416 0.584 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.413 0.587 30 H 0.417 0.583 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -9.680 0.431 12.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.624 4.624 3 C -0.224 4.224 4 N -0.259 5.259 5 Si 0.728 3.272 6 H -0.166 1.166 7 H -0.175 1.175 8 H -0.151 1.151 9 S 1.896 4.104 10 O -0.737 6.737 11 O -0.890 6.890 12 N -0.179 5.179 13 N -0.086 5.086 14 C -0.114 4.114 15 H 0.164 0.836 16 C -0.179 4.179 17 C 0.069 3.931 18 N -0.339 5.339 19 C -0.342 4.342 20 H 0.100 0.900 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.138 0.862 24 H 0.155 0.845 25 H 0.275 0.725 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.244 0.756 30 H 0.248 0.752 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.721 -8.606 0.364 10.925 hybrid contribution 0.243 0.507 -0.318 0.646 sum -6.478 -8.098 0.046 10.371 Atomic orbital electron populations 1.21382 0.91600 1.03193 1.01708 1.28809 1.03572 1.00960 1.29091 1.29963 0.92814 1.01363 0.98215 1.68257 1.09487 1.23172 1.24984 0.85995 0.82974 0.78261 0.79988 1.16605 1.17533 1.15074 1.71145 0.87153 0.75955 0.76122 1.85173 1.30931 1.87683 1.69886 1.92952 1.33487 1.80766 1.81746 1.64517 1.22731 1.23463 1.07200 1.78375 1.15659 1.06293 1.08304 1.23371 1.02709 0.93665 0.91662 0.83615 1.21541 1.02637 0.96893 0.96832 1.21590 0.90841 0.88460 0.92164 1.41463 1.55986 1.10915 1.25530 1.23059 1.14777 0.91104 1.05305 0.89971 0.92367 0.93364 0.86152 0.84467 0.72530 0.89307 0.90597 0.90998 0.75617 0.75161 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.08 8.49 37.16 0.32 0.40 16 2 C -0.52 -1.40 2.74 -27.88 -0.08 -1.47 16 3 C 0.03 0.11 5.33 -13.89 -0.07 0.04 16 4 N -0.64 -4.46 12.00 56.23 0.67 -3.79 16 5 Si 0.91 2.06 28.29 -169.99 -4.81 -2.74 16 6 H -0.24 -0.76 7.11 56.52 0.40 -0.36 16 7 H -0.25 -0.73 7.11 56.52 0.40 -0.33 16 8 H -0.23 -0.28 6.23 56.52 0.35 0.08 16 9 S 1.81 8.40 3.79 -107.50 -0.41 8.00 16 10 O -0.89 -4.08 13.32 -58.55 -0.78 -4.86 16 11 O -0.90 -10.28 17.75 -58.55 -1.04 -11.32 16 12 N -0.28 -0.08 3.53 30.26 0.11 0.03 16 13 N -0.19 0.37 9.64 -4.90 -0.05 0.32 16 14 C 0.00 0.00 4.39 -68.03 -0.30 -0.30 16 15 H 0.15 -1.06 8.14 -51.93 -0.42 -1.48 16 16 C -0.12 0.67 9.65 37.16 0.36 1.03 16 17 C 0.20 -0.83 7.21 -80.52 -0.58 -1.41 16 18 N -0.80 5.79 9.00 34.22 0.31 6.10 16 19 C -0.20 0.16 10.96 -17.71 -0.19 -0.03 16 20 H 0.08 -0.21 6.17 -51.93 -0.32 -0.53 16 21 H 0.06 -0.04 6.12 -51.93 -0.32 -0.36 16 22 H 0.05 -0.09 7.26 -51.93 -0.38 -0.47 16 23 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.34 1.66 8.23 -40.82 -0.34 1.33 16 25 H 0.42 -0.39 7.96 67.38 0.54 0.15 16 26 H 0.09 -0.53 8.14 -51.93 -0.42 -0.95 16 27 H 0.08 -0.57 8.14 -51.93 -0.42 -0.99 16 28 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 29 H 0.41 -3.90 8.95 -40.82 -0.37 -4.27 16 30 H 0.42 -3.35 8.95 -40.82 -0.37 -3.71 16 31 H 0.17 -0.08 8.06 -52.48 -0.42 -0.51 16 LS Contribution 268.94 15.07 4.05 4.05 Total: 0.00 -13.88 268.94 -5.42 -19.30 By element: Atomic # 1 Polarization: -10.41 SS G_CDS: -2.93 Total: -13.34 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.55 Total: -1.75 kcal Atomic # 7 Polarization: 1.62 SS G_CDS: 1.04 Total: 2.66 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.82 Total: -16.18 kcal Atomic # 14 Polarization: 2.06 SS G_CDS: -4.81 Total: -2.74 kcal Atomic # 16 Polarization: 8.40 SS G_CDS: -0.41 Total: 8.00 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -13.88 -5.42 -19.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.175 kcal (2) G-P(sol) polarization free energy of solvation -13.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds