Wall clock time and date at job start Mon Mar 30 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46941 * 2 1 4 4 N 1.27945 * 119.99975 * 235.00134 * 3 2 1 5 5 Si 1.86806 * 119.99833 * 55.00294 * 3 2 1 6 6 H 1.48499 * 109.46955 * 90.00035 * 5 3 2 7 7 H 1.48499 * 109.46927 * 210.00243 * 5 3 2 8 8 H 1.48504 * 109.46907 * 329.99704 * 5 3 2 9 9 S 1.81403 * 109.47137 * 240.00517 * 2 1 3 10 10 O 1.52192 * 108.33313 * 57.78128 * 9 2 1 11 11 O 1.42101 * 114.64963 * 178.89438 * 9 2 1 12 12 N 1.65598 * 108.33021 * 299.99326 * 9 2 1 13 13 N 1.23271 * 122.50101 * 0.03092 * 12 9 2 14 14 C 1.47311 * 107.95387 * 179.97438 * 13 12 9 15 15 H 1.08994 * 110.75238 * 241.49060 * 14 13 12 16 16 C 1.53006 * 110.74906 * 118.32112 * 14 13 12 17 17 C 1.51928 * 102.95509 * 359.90776 * 14 13 12 18 18 N 1.37144 * 128.19690 * 180.02562 * 17 14 13 19 19 C 1.33558 * 122.50372 * 179.97438 * 12 9 2 20 20 H 1.08999 * 109.46665 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47134 * 299.99606 * 1 2 3 22 22 H 1.08993 * 109.47436 * 59.99640 * 1 2 3 23 23 H 1.08994 * 109.47816 * 119.99979 * 2 1 3 24 24 H 0.97004 * 119.99488 * 179.97438 * 4 3 2 25 25 H 0.96690 * 114.00439 * 304.93918 * 10 9 2 26 26 H 1.09001 * 109.47002 * 63.91488 * 16 14 13 27 27 H 1.08993 * 109.46955 * 183.91925 * 16 14 13 28 28 H 1.09000 * 109.47050 * 303.91754 * 16 14 13 29 29 H 0.97002 * 120.00468 * 359.97438 * 18 17 14 30 30 H 0.97005 * 119.99230 * 180.02562 * 18 17 14 31 31 H 1.08005 * 124.66738 * 0.05509 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.8447 1.8122 -0.9077 5 14 1.4688 2.6107 1.3253 6 1 2.4008 2.5437 2.4794 7 1 1.4565 3.9912 0.7783 8 1 0.1009 2.2430 1.7715 9 16 2.1347 -0.8550 -1.4812 10 8 1.5680 -0.1505 -2.7055 11 8 3.5496 -0.8976 -1.6048 12 7 1.5674 -2.4105 -1.4527 13 7 0.8570 -2.8399 -0.5414 14 6 0.5401 -4.2477 -0.8374 15 1 -0.5349 -4.3855 -0.9533 16 6 1.0877 -5.1680 0.2554 17 6 1.2586 -4.4890 -2.1541 18 7 1.3042 -5.6410 -2.8967 19 6 1.8445 -3.2933 -2.4159 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 0.8899 24 1 3.1677 2.7269 -0.9078 25 1 0.6040 -0.0760 -2.7054 26 1 0.5899 -4.9470 1.1996 27 1 0.9033 -6.2067 -0.0183 28 1 2.1601 -5.0057 0.3634 29 1 0.8370 -6.4342 -2.5907 30 1 1.8042 -5.6629 -3.7277 31 1 2.4509 -3.0842 -3.2849 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:23 Heat of formation + Delta-G solvation = 49.334797 kcal Electronic energy + Delta-G solvation = -17353.426750 eV Core-core repulsion = 14494.582311 eV Total energy + Delta-G solvation = -2858.844439 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.44414 -37.54104 -36.98822 -36.97653 -36.08270 -33.43954 -32.69607 -30.56999 -27.58215 -25.03329 -22.62138 -22.36103 -20.76448 -20.33955 -19.70305 -18.12953 -17.66364 -17.41307 -17.06775 -16.37592 -15.92596 -15.75905 -15.25676 -14.47291 -14.29574 -14.15973 -13.74164 -13.51671 -13.35544 -13.18877 -12.76818 -12.67693 -12.50193 -12.34446 -12.23779 -12.10795 -11.87719 -11.61327 -11.31153 -10.71738 -9.66973 -8.98673 -6.61253 -0.60511 0.85719 1.10417 1.29163 1.39581 1.72633 1.80374 1.86108 2.34798 2.47779 2.94132 3.52558 3.79953 3.82776 3.88674 4.14438 4.27823 4.35472 4.65473 4.77308 4.83342 4.90310 5.01908 5.10386 5.29309 5.38498 5.49245 5.63709 6.00073 6.43051 6.50087 6.79375 6.92927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.538 4.538 3 C 0.018 3.982 4 N -0.695 5.695 5 Si 0.945 3.055 6 H -0.258 1.258 7 H -0.265 1.265 8 H -0.201 1.201 9 S 1.761 4.239 10 O -0.894 6.894 11 O -0.998 6.998 12 N -0.260 5.260 13 N -0.167 5.167 14 C -0.012 4.012 15 H 0.201 0.799 16 C -0.120 4.120 17 C 0.245 3.755 18 N -0.773 5.773 19 C -0.250 4.250 20 H 0.101 0.899 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.119 0.881 24 H 0.336 0.664 25 H 0.430 0.570 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.432 0.568 30 H 0.426 0.574 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 -13.179 1.001 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.639 4.639 3 C -0.229 4.229 4 N -0.310 5.310 5 Si 0.761 3.239 6 H -0.183 1.183 7 H -0.189 1.189 8 H -0.122 1.122 9 S 1.847 4.153 10 O -0.750 6.750 11 O -0.989 6.989 12 N -0.155 5.155 13 N -0.056 5.056 14 C -0.125 4.125 15 H 0.217 0.783 16 C -0.180 4.180 17 C 0.112 3.888 18 N -0.307 5.307 19 C -0.398 4.398 20 H 0.120 0.880 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.136 0.864 24 H 0.153 0.847 25 H 0.292 0.708 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.266 0.734 30 H 0.259 0.741 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.925 -12.207 0.955 15.761 hybrid contribution 1.106 0.946 -0.528 1.548 sum -8.819 -11.260 0.427 14.309 Atomic orbital electron populations 1.21406 0.89243 1.04597 1.02176 1.28903 1.05504 0.99772 1.29741 1.30724 0.91207 1.03103 0.97824 1.68409 1.11772 1.23375 1.27434 0.85540 0.83716 0.76552 0.78068 1.18271 1.18945 1.12176 1.78699 0.83815 0.76613 0.76222 1.85113 1.32315 1.87749 1.69810 1.92669 1.40371 1.82377 1.83452 1.65200 1.17254 1.26602 1.06493 1.78347 1.08450 1.08391 1.10426 1.23909 1.05266 0.92030 0.91338 0.78259 1.21667 1.01340 0.98201 0.96795 1.21733 0.87923 0.87566 0.91550 1.41718 1.53811 1.10149 1.25057 1.23166 1.17949 0.92758 1.05935 0.88037 0.92154 0.92457 0.86369 0.84728 0.70838 0.88136 0.87458 0.93060 0.73417 0.74130 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 8.49 71.98 0.61 0.76 16 2 C -0.54 -4.18 2.74 29.85 0.08 -4.09 16 3 C 0.02 0.21 5.33 88.68 0.47 0.68 16 4 N -0.69 -12.90 12.00 24.11 0.29 -12.61 16 5 Si 0.95 5.62 28.29 68.60 1.94 7.56 16 6 H -0.26 -2.10 7.11 99.48 0.71 -1.39 16 7 H -0.27 -2.03 7.11 99.48 0.71 -1.33 16 8 H -0.20 -0.28 6.23 99.48 0.62 0.34 16 9 S 1.76 22.68 3.79 -56.49 -0.21 22.47 16 10 O -0.89 -11.56 13.32 -126.68 -1.69 -13.24 16 11 O -1.00 -28.79 17.75 -126.68 -2.25 -31.03 16 12 N -0.26 -0.38 3.53 -58.16 -0.21 -0.58 16 13 N -0.17 0.87 9.64 -169.41 -1.63 -0.77 16 14 C -0.01 0.16 4.39 44.49 0.20 0.36 16 15 H 0.20 -4.21 8.14 -2.39 -0.02 -4.23 16 16 C -0.12 1.82 9.65 71.98 0.69 2.51 16 17 C 0.25 -2.74 7.21 41.53 0.30 -2.44 16 18 N -0.77 14.19 9.00 -45.63 -0.41 13.78 16 19 C -0.25 0.32 10.96 83.84 0.92 1.24 16 20 H 0.10 -0.65 6.17 -2.39 -0.01 -0.67 16 21 H 0.06 -0.14 6.12 -2.39 -0.01 -0.15 16 22 H 0.06 -0.20 7.26 -2.39 -0.02 -0.22 16 23 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 24 H 0.34 5.00 8.23 -92.70 -0.76 4.23 16 25 H 0.43 0.31 7.96 -87.94 -0.70 -0.39 16 26 H 0.10 -1.62 8.14 -2.39 -0.02 -1.64 16 27 H 0.11 -2.21 8.14 -2.39 -0.02 -2.23 16 28 H 0.05 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H 0.43 -10.43 8.95 -92.71 -0.83 -11.26 16 30 H 0.43 -8.20 8.95 -92.70 -0.83 -9.03 16 31 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 Total: 0.00 -40.79 268.94 -2.15 -42.94 By element: Atomic # 1 Polarization: -26.26 SS G_CDS: -1.26 Total: -27.52 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 3.27 Total: -0.99 kcal Atomic # 7 Polarization: 1.78 SS G_CDS: -1.96 Total: -0.18 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -3.94 Total: -44.28 kcal Atomic # 14 Polarization: 5.62 SS G_CDS: 1.94 Total: 7.56 kcal Atomic # 16 Polarization: 22.68 SS G_CDS: -0.21 Total: 22.47 kcal Total: -40.79 -2.15 -42.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.278 kcal (2) G-P(sol) polarization free energy of solvation -40.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds