Wall clock time and date at job start Mon Mar 30 2020 03:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47321 * 2 1 4 4 N 1.27940 * 119.99776 * 124.99732 * 3 2 1 5 5 Si 1.86794 * 119.99891 * 305.00085 * 3 2 1 6 6 H 1.48498 * 109.47514 * 0.02562 * 5 3 2 7 7 H 1.48508 * 109.46783 * 120.00150 * 5 3 2 8 8 H 1.48505 * 109.47102 * 239.99475 * 5 3 2 9 9 S 1.81402 * 109.46999 * 120.00384 * 2 1 3 10 10 O 1.52206 * 108.32870 * 302.20916 * 9 2 1 11 11 O 1.42099 * 114.64828 * 181.10777 * 9 2 1 12 12 N 1.65598 * 108.33229 * 59.99626 * 9 2 1 13 13 N 1.23265 * 122.50296 * 359.71806 * 12 9 2 14 14 C 1.47308 * 107.95242 * 179.85919 * 13 12 9 15 15 H 1.09001 * 110.57430 * 118.61233 * 14 13 12 16 16 C 1.53003 * 111.08394 * 241.88427 * 14 13 12 17 17 C 1.51921 * 102.79388 * 0.36387 * 14 13 12 18 18 N 1.37142 * 128.20526 * 179.81106 * 17 14 13 19 19 C 1.33561 * 122.49600 * 180.02562 * 12 9 2 20 20 H 1.08997 * 109.47344 * 299.99803 * 1 2 3 21 21 H 1.09002 * 109.47031 * 59.99889 * 1 2 3 22 22 H 1.09000 * 109.47652 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46895 * 239.99907 * 2 1 3 24 24 H 0.97003 * 120.00376 * 180.02562 * 4 3 2 25 25 H 0.96693 * 113.99730 * 55.06954 * 10 9 2 26 26 H 1.09000 * 109.47238 * 173.56713 * 16 14 13 27 27 H 1.08999 * 109.47325 * 293.56532 * 16 14 13 28 28 H 1.08997 * 109.46948 * 53.56358 * 16 14 13 29 29 H 0.96995 * 120.00096 * 180.02562 * 18 17 14 30 30 H 0.97008 * 120.00104 * 0.02562 * 18 17 14 31 31 H 1.08002 * 124.67591 * 0.02562 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.8448 1.8120 0.9077 5 14 1.4689 2.6107 -1.3251 6 1 0.5363 1.9169 -2.2494 7 1 0.7746 3.7618 -0.6940 8 1 2.6474 3.0996 -2.0850 9 16 2.1346 -0.8552 1.4811 10 8 1.5681 -0.1506 2.7055 11 8 3.5496 -0.8978 1.6047 12 7 1.5671 -2.4107 1.4525 13 7 0.8529 -2.8386 0.5436 14 6 0.5405 -4.2480 0.8368 15 1 -0.5342 -4.3854 0.9554 16 6 1.0855 -5.1711 -0.2549 17 6 1.2621 -4.4858 2.1523 18 7 1.3115 -5.6366 2.8967 19 6 1.8443 -3.2934 2.4158 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1679 2.7267 0.9080 25 1 0.6040 -0.0762 2.7054 26 1 0.9417 -6.2099 0.0424 27 1 0.5544 -4.9835 -1.1880 28 1 2.1488 -4.9777 -0.3969 29 1 1.8125 -5.6561 3.7269 30 1 0.8453 -6.4312 2.5928 31 1 2.4497 -3.0842 3.2853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:25 Heat of formation + Delta-G solvation = 61.927533 kcal Electronic energy + Delta-G solvation = -17353.911918 eV Core-core repulsion = 14495.613541 eV Total energy + Delta-G solvation = -2858.298377 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.50554 -37.38111 -37.18771 -36.79689 -35.84211 -33.71734 -32.64907 -30.71091 -27.87529 -25.01922 -22.87443 -22.49068 -20.67597 -20.22663 -19.75093 -18.04246 -17.83115 -17.53688 -17.21216 -16.38340 -15.83822 -15.77943 -15.15147 -14.49814 -14.26255 -14.21229 -13.95308 -13.54377 -13.37519 -13.27152 -12.97483 -12.68493 -12.55336 -12.43114 -12.18336 -11.94677 -11.84763 -11.63439 -11.09642 -10.59881 -9.47570 -9.23745 -6.51751 -0.82554 1.07649 1.17335 1.32686 1.57598 1.75922 1.91702 2.02888 2.20984 2.43776 2.80383 3.30178 3.58936 3.72952 3.91041 3.94092 4.14703 4.18226 4.35920 4.54123 4.62275 4.73839 4.83718 4.93739 4.99751 5.30474 5.46689 5.60301 5.71148 6.00671 6.31850 6.72023 7.14262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.523 4.523 3 C 0.026 3.974 4 N -0.644 5.644 5 Si 0.910 3.090 6 H -0.229 1.229 7 H -0.245 1.245 8 H -0.249 1.249 9 S 1.811 4.189 10 O -0.885 6.885 11 O -0.901 6.901 12 N -0.279 5.279 13 N -0.193 5.193 14 C 0.000 4.000 15 H 0.147 0.853 16 C -0.118 4.118 17 C 0.197 3.803 18 N -0.804 5.804 19 C -0.200 4.200 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.338 0.662 25 H 0.416 0.584 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.417 0.583 30 H 0.413 0.587 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -9.650 -0.422 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.624 4.624 3 C -0.223 4.223 4 N -0.259 5.259 5 Si 0.727 3.273 6 H -0.151 1.151 7 H -0.169 1.169 8 H -0.172 1.172 9 S 1.897 4.103 10 O -0.737 6.737 11 O -0.889 6.889 12 N -0.180 5.180 13 N -0.086 5.086 14 C -0.113 4.113 15 H 0.164 0.836 16 C -0.179 4.179 17 C 0.069 3.931 18 N -0.340 5.340 19 C -0.342 4.342 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.101 0.899 23 H 0.139 0.861 24 H 0.155 0.845 25 H 0.275 0.725 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.248 0.752 30 H 0.243 0.757 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.702 -8.578 -0.356 10.892 hybrid contribution 0.243 0.512 0.317 0.650 sum -6.460 -8.066 -0.039 10.334 Atomic orbital electron populations 1.21336 0.91629 1.03229 1.01574 1.28816 1.03565 1.00975 1.29061 1.29961 0.92788 1.01361 0.98225 1.68252 1.09498 1.23073 1.25043 0.85980 0.82053 0.79138 0.80145 1.15096 1.16858 1.17245 1.71046 0.87154 0.75946 0.76121 1.85178 1.30937 1.87683 1.69875 1.92954 1.33455 1.80769 1.81746 1.64531 1.22687 1.23497 1.07257 1.78362 1.15630 1.06361 1.08291 1.23367 1.02697 0.93604 0.91680 0.83646 1.21536 1.02732 0.96813 0.96783 1.21484 0.90968 0.88478 0.92161 1.41466 1.56039 1.10921 1.25578 1.22962 1.14829 0.91185 1.05247 0.93326 0.92539 0.89884 0.86129 0.84497 0.72525 0.90607 0.89343 0.90958 0.75174 0.75651 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.09 8.49 37.16 0.32 0.41 16 2 C -0.52 -1.39 2.74 -27.88 -0.08 -1.47 16 3 C 0.03 0.11 5.33 -13.90 -0.07 0.04 16 4 N -0.64 -4.44 12.00 56.23 0.67 -3.77 16 5 Si 0.91 2.10 28.01 -169.99 -4.76 -2.67 16 6 H -0.23 -0.33 6.70 56.52 0.38 0.05 16 7 H -0.25 -0.64 7.11 56.52 0.40 -0.24 16 8 H -0.25 -0.85 7.11 56.52 0.40 -0.44 16 9 S 1.81 8.36 3.80 -107.50 -0.41 7.95 16 10 O -0.89 -4.06 13.32 -58.55 -0.78 -4.84 16 11 O -0.90 -10.25 17.75 -58.55 -1.04 -11.29 16 12 N -0.28 -0.07 3.53 30.18 0.11 0.03 16 13 N -0.19 0.37 9.64 -4.90 -0.05 0.32 16 14 C 0.00 0.00 4.39 -68.04 -0.30 -0.30 16 15 H 0.15 -1.05 8.14 -51.93 -0.42 -1.48 16 16 C -0.12 0.66 9.67 37.16 0.36 1.02 16 17 C 0.20 -0.82 7.18 -80.67 -0.58 -1.40 16 18 N -0.80 5.77 9.00 34.15 0.31 6.08 16 19 C -0.20 0.16 10.95 -17.85 -0.20 -0.03 16 20 H 0.05 -0.10 7.26 -51.93 -0.38 -0.47 16 21 H 0.06 -0.05 6.38 -51.93 -0.33 -0.38 16 22 H 0.08 -0.22 6.16 -51.93 -0.32 -0.54 16 23 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.34 1.63 8.23 -40.82 -0.34 1.29 16 25 H 0.42 -0.41 7.96 67.38 0.54 0.13 16 26 H 0.08 -0.56 8.14 -51.93 -0.42 -0.99 16 27 H 0.09 -0.54 8.14 -51.93 -0.42 -0.96 16 28 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 29 H 0.42 -3.33 8.95 -40.82 -0.37 -3.69 16 30 H 0.41 -3.88 8.95 -40.82 -0.37 -4.25 16 31 H 0.17 -0.09 8.06 -52.49 -0.42 -0.51 16 LS Contribution 269.36 15.07 4.06 4.06 Total: 0.00 -13.90 269.36 -5.35 -19.25 By element: Atomic # 1 Polarization: -10.49 SS G_CDS: -2.91 Total: -13.40 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.55 Total: -1.73 kcal Atomic # 7 Polarization: 1.62 SS G_CDS: 1.04 Total: 2.67 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.82 Total: -16.12 kcal Atomic # 14 Polarization: 2.10 SS G_CDS: -4.76 Total: -2.67 kcal Atomic # 16 Polarization: 8.36 SS G_CDS: -0.41 Total: 7.95 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -13.90 -5.35 -19.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.176 kcal (2) G-P(sol) polarization free energy of solvation -13.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds