Wall clock time and date at job start Mon Mar 30 2020 03:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47321 * 2 1 4 4 N 1.27940 * 119.99776 * 124.99732 * 3 2 1 5 5 Si 1.86794 * 119.99891 * 305.00085 * 3 2 1 6 6 H 1.48498 * 109.47514 * 0.02562 * 5 3 2 7 7 H 1.48508 * 109.46783 * 120.00150 * 5 3 2 8 8 H 1.48505 * 109.47102 * 239.99475 * 5 3 2 9 9 S 1.81402 * 109.46999 * 120.00384 * 2 1 3 10 10 O 1.52206 * 108.32870 * 302.20916 * 9 2 1 11 11 O 1.42099 * 114.64828 * 181.10777 * 9 2 1 12 12 N 1.65598 * 108.33229 * 59.99626 * 9 2 1 13 13 N 1.23265 * 122.50296 * 359.71806 * 12 9 2 14 14 C 1.47308 * 107.95242 * 179.85919 * 13 12 9 15 15 H 1.09001 * 110.57430 * 118.61233 * 14 13 12 16 16 C 1.53003 * 111.08394 * 241.88427 * 14 13 12 17 17 C 1.51921 * 102.79388 * 0.36387 * 14 13 12 18 18 N 1.37142 * 128.20526 * 179.81106 * 17 14 13 19 19 C 1.33561 * 122.49600 * 180.02562 * 12 9 2 20 20 H 1.08997 * 109.47344 * 299.99803 * 1 2 3 21 21 H 1.09002 * 109.47031 * 59.99889 * 1 2 3 22 22 H 1.09000 * 109.47652 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46895 * 239.99907 * 2 1 3 24 24 H 0.97003 * 120.00376 * 180.02562 * 4 3 2 25 25 H 0.96693 * 113.99730 * 55.06954 * 10 9 2 26 26 H 1.09000 * 109.47238 * 173.56713 * 16 14 13 27 27 H 1.08999 * 109.47325 * 293.56532 * 16 14 13 28 28 H 1.08997 * 109.46948 * 53.56358 * 16 14 13 29 29 H 0.96995 * 120.00096 * 180.02562 * 18 17 14 30 30 H 0.97008 * 120.00104 * 0.02562 * 18 17 14 31 31 H 1.08002 * 124.67591 * 0.02562 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.8448 1.8120 0.9077 5 14 1.4689 2.6107 -1.3251 6 1 0.5363 1.9169 -2.2494 7 1 0.7746 3.7618 -0.6940 8 1 2.6474 3.0996 -2.0850 9 16 2.1346 -0.8552 1.4811 10 8 1.5681 -0.1506 2.7055 11 8 3.5496 -0.8978 1.6047 12 7 1.5671 -2.4107 1.4525 13 7 0.8529 -2.8386 0.5436 14 6 0.5405 -4.2480 0.8368 15 1 -0.5342 -4.3854 0.9554 16 6 1.0855 -5.1711 -0.2549 17 6 1.2621 -4.4858 2.1523 18 7 1.3115 -5.6366 2.8967 19 6 1.8443 -3.2934 2.4158 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1679 2.7267 0.9080 25 1 0.6040 -0.0762 2.7054 26 1 0.9417 -6.2099 0.0424 27 1 0.5544 -4.9835 -1.1880 28 1 2.1488 -4.9777 -0.3969 29 1 1.8125 -5.6561 3.7269 30 1 0.8453 -6.4312 2.5928 31 1 2.4497 -3.0842 3.2853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:25 Heat of formation + Delta-G solvation = 49.346028 kcal Electronic energy + Delta-G solvation = -17354.457493 eV Core-core repulsion = 14495.613541 eV Total energy + Delta-G solvation = -2858.843952 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.46944 -37.54242 -36.99187 -36.98229 -36.08572 -33.43938 -32.69771 -30.58427 -27.59578 -25.03576 -22.63017 -22.35352 -20.76362 -20.34078 -19.71153 -18.13219 -17.65929 -17.42077 -17.05525 -16.37653 -15.92179 -15.76296 -15.26972 -14.44937 -14.31300 -14.16346 -13.74862 -13.51801 -13.32994 -13.19054 -12.76649 -12.67746 -12.51822 -12.32239 -12.23124 -12.11457 -11.93182 -11.61907 -11.33856 -10.72004 -9.68097 -8.99668 -6.61568 -0.60542 0.84721 1.10126 1.29872 1.41442 1.71168 1.79810 1.86341 2.35291 2.47491 2.93854 3.52910 3.79714 3.82615 3.88458 4.14477 4.27730 4.36236 4.65261 4.76886 4.82935 4.90578 5.01237 5.09756 5.29241 5.37824 5.49094 5.62973 6.00615 6.42881 6.50487 6.78963 6.92666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.538 4.538 3 C 0.018 3.982 4 N -0.694 5.694 5 Si 0.946 3.054 6 H -0.206 1.206 7 H -0.249 1.249 8 H -0.271 1.271 9 S 1.762 4.238 10 O -0.894 6.894 11 O -0.998 6.998 12 N -0.260 5.260 13 N -0.166 5.166 14 C -0.012 4.012 15 H 0.201 0.799 16 C -0.120 4.120 17 C 0.244 3.756 18 N -0.774 5.774 19 C -0.250 4.250 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.102 0.898 23 H 0.119 0.881 24 H 0.336 0.664 25 H 0.430 0.570 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.425 0.575 30 H 0.431 0.569 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 -13.168 -1.016 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.639 4.639 3 C -0.228 4.228 4 N -0.309 5.309 5 Si 0.761 3.239 6 H -0.127 1.127 7 H -0.173 1.173 8 H -0.196 1.196 9 S 1.847 4.153 10 O -0.750 6.750 11 O -0.988 6.988 12 N -0.156 5.156 13 N -0.055 5.055 14 C -0.125 4.125 15 H 0.217 0.783 16 C -0.180 4.180 17 C 0.112 3.888 18 N -0.309 5.309 19 C -0.397 4.397 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.120 0.880 23 H 0.137 0.863 24 H 0.153 0.847 25 H 0.292 0.708 26 H 0.125 0.875 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.258 0.742 30 H 0.265 0.735 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.856 -12.198 -0.970 15.713 hybrid contribution 1.087 0.962 0.536 1.548 sum -8.770 -11.236 -0.434 14.260 Atomic orbital electron populations 1.21363 0.89279 1.04629 1.02087 1.28914 1.05497 0.99778 1.29732 1.30717 0.91200 1.03098 0.97820 1.68403 1.11783 1.23324 1.27434 0.85510 0.81177 0.78071 0.79099 1.12720 1.17281 1.19578 1.78639 0.83825 0.76609 0.76219 1.85118 1.32316 1.87752 1.69805 1.92670 1.40338 1.82373 1.83447 1.65216 1.17206 1.26636 1.06537 1.78336 1.08362 1.08452 1.10387 1.23909 1.05253 0.91980 0.91367 0.78294 1.21662 1.01462 0.98033 0.96799 1.21632 0.88058 0.87600 0.91559 1.41718 1.53880 1.10173 1.25100 1.23069 1.17986 0.92820 1.05868 0.92417 0.92276 0.87956 0.86329 0.84712 0.70838 0.87541 0.88063 0.93041 0.74151 0.73458 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.15 8.49 71.98 0.61 0.76 16 2 C -0.54 -4.16 2.74 29.85 0.08 -4.08 16 3 C 0.02 0.21 5.33 88.68 0.47 0.69 16 4 N -0.69 -12.84 12.00 24.11 0.29 -12.55 16 5 Si 0.95 5.70 28.01 68.60 1.92 7.62 16 6 H -0.21 -0.44 6.70 99.48 0.67 0.22 16 7 H -0.25 -1.58 7.11 99.48 0.71 -0.87 16 8 H -0.27 -2.49 7.11 99.48 0.71 -1.78 16 9 S 1.76 22.57 3.80 -56.49 -0.21 22.36 16 10 O -0.89 -11.51 13.32 -126.68 -1.69 -13.20 16 11 O -1.00 -28.68 17.75 -126.68 -2.25 -30.93 16 12 N -0.26 -0.36 3.53 -58.42 -0.21 -0.57 16 13 N -0.17 0.87 9.64 -169.42 -1.63 -0.76 16 14 C -0.01 0.16 4.39 44.48 0.20 0.35 16 15 H 0.20 -4.20 8.14 -2.39 -0.02 -4.21 16 16 C -0.12 1.81 9.67 71.98 0.70 2.51 16 17 C 0.24 -2.72 7.18 41.44 0.30 -2.43 16 18 N -0.77 14.15 9.00 -45.87 -0.41 13.74 16 19 C -0.25 0.33 10.95 83.75 0.92 1.24 16 20 H 0.06 -0.20 7.26 -2.39 -0.02 -0.22 16 21 H 0.06 -0.14 6.38 -2.39 -0.02 -0.16 16 22 H 0.10 -0.66 6.16 -2.39 -0.01 -0.68 16 23 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.34 4.92 8.23 -92.71 -0.76 4.15 16 25 H 0.43 0.30 7.96 -87.94 -0.70 -0.40 16 26 H 0.11 -2.18 8.14 -2.39 -0.02 -2.20 16 27 H 0.10 -1.65 8.14 -2.39 -0.02 -1.67 16 28 H 0.05 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H 0.43 -8.15 8.95 -92.71 -0.83 -8.98 16 30 H 0.43 -10.38 8.95 -92.70 -0.83 -11.21 16 31 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 Total: 0.00 -40.72 269.36 -2.13 -42.85 By element: Atomic # 1 Polarization: -26.39 SS G_CDS: -1.21 Total: -27.60 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 3.27 Total: -0.95 kcal Atomic # 7 Polarization: 1.82 SS G_CDS: -1.96 Total: -0.15 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -3.94 Total: -44.13 kcal Atomic # 14 Polarization: 5.70 SS G_CDS: 1.92 Total: 7.62 kcal Atomic # 16 Polarization: 22.57 SS G_CDS: -0.21 Total: 22.36 kcal Total: -40.72 -2.13 -42.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.198 kcal (2) G-P(sol) polarization free energy of solvation -40.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds