Wall clock time and date at job start Mon Mar 30 2020 03:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.29060 * 126.38924 * 2 1 4 4 C 1.47152 * 109.78480 * 180.15501 * 3 2 1 5 5 C 1.50706 * 125.10770 * 179.78427 * 4 3 2 6 6 N 1.46496 * 109.47494 * 179.72085 * 5 4 3 7 7 S 1.65598 * 120.00165 * 164.99791 * 6 5 4 8 8 O 1.52198 * 109.46909 * 60.00195 * 7 6 5 9 9 O 1.42106 * 109.47272 * 300.00076 * 7 6 5 10 10 C 1.76201 * 109.47133 * 180.02562 * 7 6 5 11 11 H 1.07998 * 119.99984 * 0.02562 * 10 7 6 12 12 C 1.37874 * 119.99978 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00030 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00082 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46889 * 60.00389 * 14 12 10 16 16 H 1.48499 * 109.47185 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.46976 * 300.00278 * 14 12 10 18 18 N 1.29066 * 109.79050 * 359.52160 * 4 3 2 19 19 C 1.46856 * 107.21845 * 0.26418 * 18 4 3 20 20 H 1.08998 * 109.46886 * 270.35657 * 1 2 3 21 21 H 1.09001 * 109.46626 * 30.35280 * 1 2 3 22 22 H 1.08997 * 109.46839 * 150.35302 * 1 2 3 23 23 H 1.07994 * 125.11027 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.46596 * 299.72075 * 5 4 3 25 25 H 1.09004 * 109.46950 * 59.71894 * 5 4 3 26 26 H 0.97003 * 119.99860 * 345.00610 * 6 5 4 27 27 H 0.96696 * 113.99986 * 59.99996 * 8 7 6 28 28 H 0.97000 * 119.99709 * 179.97438 * 13 12 10 29 29 H 1.08997 * 110.14972 * 119.13016 * 19 18 4 30 30 H 1.09005 * 110.14578 * 240.87602 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2307 1.0389 0.0000 4 6 3.6409 0.6184 -0.0037 5 6 4.8238 1.5522 -0.0095 6 7 6.0629 0.7708 -0.0052 7 16 7.5021 1.4986 -0.3810 8 8 7.7741 2.6246 0.6062 9 8 7.4352 2.0289 -1.6977 10 6 8.8014 0.3118 -0.2918 11 1 8.5812 -0.7107 -0.0229 12 6 10.0990 0.6884 -0.5662 13 7 10.3671 1.9335 -0.8940 14 14 11.4767 -0.5697 -0.4708 15 1 11.2109 -1.6687 -1.4336 16 1 12.7672 0.0830 -0.8080 17 1 11.5471 -1.1233 0.9053 18 7 3.7126 -0.6702 0.0042 19 6 2.3362 -1.1822 0.0073 20 1 -0.3633 0.0064 1.0276 21 1 -0.3632 0.8868 -0.5193 22 1 -0.3633 -0.8931 -0.5083 23 1 1.8880 2.0631 -0.0004 24 1 4.7903 2.1754 -0.9031 25 1 4.7907 2.1859 0.8769 26 1 6.0403 -0.1730 0.2176 27 1 7.8327 2.3349 1.5268 28 1 11.2801 2.1984 -1.0867 29 1 2.1581 -1.7855 -0.8829 30 1 2.1580 -1.7745 0.9049 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:10 Heat of formation + Delta-G solvation = 30.638809 kcal Electronic energy + Delta-G solvation = -15932.071090 eV Core-core repulsion = 13086.071672 eV Total energy + Delta-G solvation = -2845.999419 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -38.32058 -37.88778 -36.09433 -35.10820 -34.43379 -31.29934 -27.88263 -27.23149 -25.77636 -23.89345 -21.21612 -20.08530 -19.31798 -18.46955 -17.41483 -16.78458 -16.28530 -15.42535 -15.00074 -14.46459 -14.13887 -13.84304 -13.51473 -13.33206 -12.86766 -12.55431 -12.46077 -12.05361 -11.89971 -11.74554 -11.41912 -11.14047 -10.86434 -10.55173 -10.35120 -10.11301 -9.56464 -8.54389 -8.06541 -7.60913 -7.51451 -6.93966 -3.12168 -0.21329 2.24924 2.44760 2.52927 2.59475 3.09672 3.39273 3.58267 4.26428 4.64483 5.25326 5.32203 5.76772 5.99596 6.08077 6.10834 6.20382 6.36904 6.41086 6.44880 6.64099 6.98847 7.26258 7.31315 7.34401 7.43340 7.62423 8.86871 8.95740 9.26864 10.00775 10.58330 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.047579 B = 0.005382 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.350951 B = 5200.924665 C = 5588.649282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.620 5.620 3 C -0.321 4.321 4 C 0.064 3.936 5 C 0.207 3.793 6 N -1.068 6.068 7 S 2.528 3.472 8 O -0.844 6.844 9 O -0.888 6.888 10 C -0.921 4.921 11 H 0.151 0.849 12 C 0.111 3.889 13 N -0.801 5.801 14 Si 0.962 3.038 15 H -0.250 1.250 16 H -0.266 1.266 17 H -0.252 1.252 18 N -0.730 5.730 19 C 0.324 3.676 20 H 0.010 0.990 21 H 0.039 0.961 22 H 0.037 0.963 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.439 0.561 27 H 0.455 0.545 28 H 0.316 0.684 29 H -0.024 1.024 30 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 1.403 4.718 9.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.341 5.341 3 C -0.455 4.455 4 C -0.082 4.082 5 C 0.081 3.919 6 N -0.836 5.836 7 S 2.643 3.357 8 O -0.700 6.700 9 O -0.876 6.876 10 C -1.062 5.062 11 H 0.168 0.832 12 C -0.115 4.115 13 N -0.428 5.428 14 Si 0.781 3.219 15 H -0.173 1.173 16 H -0.190 1.190 17 H -0.175 1.175 18 N -0.474 5.474 19 C 0.107 3.893 20 H 0.028 0.972 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.279 0.721 27 H 0.321 0.679 28 H 0.128 0.872 29 H -0.007 1.007 30 H -0.009 1.009 Dipole moment (debyes) X Y Z Total from point charges 8.998 2.247 3.789 10.018 hybrid contribution -0.361 -0.720 0.659 1.040 sum 8.637 1.527 4.447 9.834 Atomic orbital electron populations 1.20671 0.81991 0.99333 0.98017 1.43274 1.01536 1.06527 1.82745 1.20458 0.88565 0.89724 1.46726 1.21406 0.88842 0.92761 1.05194 1.19639 0.80345 0.92112 0.99756 1.54386 1.18588 1.23165 1.87452 1.08760 0.74985 0.74946 0.77018 1.85928 1.91997 1.59189 1.32861 1.93515 1.85462 1.77574 1.31068 1.29639 1.04450 1.08169 1.63976 0.83163 1.25290 0.99719 0.98028 0.88494 1.69857 1.26511 1.16951 1.29436 0.85450 0.76191 0.79024 0.81203 1.17322 1.18978 1.17532 1.74080 1.14330 1.07587 1.51353 1.21702 0.86191 0.87976 0.93415 0.97239 0.94193 0.94459 0.89056 0.91450 0.92287 0.72098 0.67895 0.87167 1.00711 1.00909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 77. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.07 11.22 59.85 0.67 3.74 16 2 N -0.62 -16.51 3.25 -183.58 -0.60 -17.11 16 3 C -0.32 -8.72 11.48 -15.10 -0.17 -8.89 16 4 C 0.06 1.66 7.11 -80.13 -0.57 1.09 16 5 C 0.21 4.10 6.88 -5.19 -0.04 4.06 16 6 N -1.07 -17.79 6.04 -11.66 -0.07 -17.87 16 7 S 2.53 39.20 4.69 -107.50 -0.50 38.70 16 8 O -0.84 -10.32 13.56 -58.38 -0.79 -11.12 16 9 O -0.89 -18.82 18.10 -58.38 -1.06 -19.87 16 10 C -0.92 -14.27 9.99 30.60 0.31 -13.96 16 11 H 0.15 2.01 7.81 -52.49 -0.41 1.60 16 12 C 0.11 1.82 5.46 -17.82 -0.10 1.72 16 13 N -0.80 -14.39 13.16 55.43 0.73 -13.66 16 14 Si 0.96 12.66 29.54 -169.99 -5.02 7.64 16 15 H -0.25 -3.43 7.11 56.52 0.40 -3.03 16 16 H -0.27 -3.43 7.11 56.52 0.40 -3.03 16 17 H -0.25 -3.13 7.11 56.52 0.40 -2.72 16 18 N -0.73 -20.09 10.75 -57.81 -0.62 -20.71 16 19 C 0.32 8.99 8.46 -62.97 -0.53 8.45 16 20 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 24 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.44 7.45 7.87 -34.47 -0.27 7.18 16 27 H 0.45 2.48 9.03 67.38 0.61 3.08 16 28 H 0.32 5.07 8.31 -40.82 -0.34 4.73 16 29 H -0.02 -0.66 8.14 -51.93 -0.42 -1.08 16 30 H -0.03 -0.70 8.14 -51.93 -0.42 -1.13 16 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -37.41 279.09 -6.75 -44.16 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.59 Total: 9.42 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.43 Total: -3.79 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -0.56 Total: -69.34 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.85 Total: -30.99 kcal Atomic # 14 Polarization: 12.66 SS G_CDS: -5.02 Total: 7.64 kcal Atomic # 16 Polarization: 39.20 SS G_CDS: -0.50 Total: 38.70 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -37.41 -6.75 -44.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.801 kcal (2) G-P(sol) polarization free energy of solvation -37.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds