Wall clock time and date at job start Mon Mar 30 2020 03:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.29060 * 126.38924 * 2 1 4 4 C 1.47152 * 109.78480 * 180.15501 * 3 2 1 5 5 C 1.50706 * 125.10770 * 179.78427 * 4 3 2 6 6 N 1.46496 * 109.47494 * 179.72085 * 5 4 3 7 7 S 1.65598 * 120.00165 * 164.99791 * 6 5 4 8 8 O 1.52200 * 109.47220 * 300.00073 * 7 6 5 9 9 O 1.42092 * 109.47083 * 60.00235 * 7 6 5 10 10 C 1.76201 * 109.47133 * 180.02562 * 7 6 5 11 11 H 1.07998 * 119.99984 * 0.02562 * 10 7 6 12 12 C 1.37874 * 119.99978 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00030 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00082 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46889 * 60.00389 * 14 12 10 16 16 H 1.48499 * 109.47185 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.46976 * 300.00278 * 14 12 10 18 18 N 1.29066 * 109.79050 * 359.52160 * 4 3 2 19 19 C 1.46856 * 107.21845 * 0.26418 * 18 4 3 20 20 H 1.08998 * 109.46886 * 270.35657 * 1 2 3 21 21 H 1.09001 * 109.46626 * 30.35280 * 1 2 3 22 22 H 1.08997 * 109.46839 * 150.35302 * 1 2 3 23 23 H 1.07994 * 125.11027 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.46596 * 299.72075 * 5 4 3 25 25 H 1.09004 * 109.46950 * 59.71894 * 5 4 3 26 26 H 0.97003 * 119.99860 * 345.00610 * 6 5 4 27 27 H 0.96697 * 114.00293 * 300.00161 * 8 7 6 28 28 H 0.97000 * 119.99709 * 179.97438 * 13 12 10 29 29 H 1.08997 * 110.14972 * 119.13016 * 19 18 4 30 30 H 1.09005 * 110.14578 * 240.87602 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2307 1.0389 0.0000 4 6 3.6409 0.6184 -0.0037 5 6 4.8238 1.5522 -0.0095 6 7 6.0629 0.7708 -0.0052 7 16 7.5021 1.4986 -0.3810 8 8 7.4304 2.0666 -1.7913 9 8 7.7561 2.5499 0.5406 10 6 8.8014 0.3118 -0.2918 11 1 8.5812 -0.7107 -0.0229 12 6 10.0990 0.6884 -0.5662 13 7 10.3671 1.9335 -0.8940 14 14 11.4767 -0.5697 -0.4708 15 1 11.2109 -1.6687 -1.4336 16 1 12.7672 0.0830 -0.8080 17 1 11.5471 -1.1233 0.9053 18 7 3.7126 -0.6702 0.0042 19 6 2.3362 -1.1822 0.0073 20 1 -0.3633 0.0064 1.0276 21 1 -0.3632 0.8868 -0.5193 22 1 -0.3633 -0.8931 -0.5083 23 1 1.8880 2.0631 -0.0004 24 1 4.7903 2.1754 -0.9031 25 1 4.7907 2.1859 0.8769 26 1 6.0403 -0.1730 0.2176 27 1 7.2591 1.4036 -2.4741 28 1 11.2801 2.1984 -1.0867 29 1 2.1581 -1.7855 -0.8829 30 1 2.1580 -1.7745 0.9049 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:13 Heat of formation + Delta-G solvation = 29.562374 kcal Electronic energy + Delta-G solvation = -15938.439331 eV Core-core repulsion = 13092.393235 eV Total energy + Delta-G solvation = -2846.046096 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.29196 -37.91882 -36.12195 -35.11410 -34.43124 -31.32439 -27.88338 -27.24394 -25.80580 -23.91063 -21.18837 -20.08352 -19.34101 -18.47441 -17.42880 -16.77661 -16.26842 -15.44324 -15.01649 -14.44546 -14.16390 -13.86360 -13.50826 -13.34720 -12.86819 -12.59475 -12.47780 -12.05083 -11.89740 -11.77002 -11.42449 -11.16258 -10.90892 -10.56050 -10.34902 -10.14894 -9.55324 -8.57395 -8.06050 -7.63839 -7.55690 -6.93700 -3.15764 -0.18747 2.24909 2.44779 2.53064 2.59612 3.09971 3.39363 3.58730 4.25830 4.60060 5.22283 5.32661 5.76817 5.99928 6.04383 6.10619 6.23124 6.36170 6.38036 6.43653 6.64563 6.95506 7.24202 7.27752 7.33445 7.43953 7.59933 8.87363 8.92388 9.23683 9.97182 10.54766 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.047795 B = 0.005382 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.698316 B = 5201.170438 C = 5580.207032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.620 5.620 3 C -0.318 4.318 4 C 0.061 3.939 5 C 0.208 3.792 6 N -1.068 6.068 7 S 2.532 3.468 8 O -0.843 6.843 9 O -0.891 6.891 10 C -0.923 4.923 11 H 0.151 0.849 12 C 0.111 3.889 13 N -0.801 5.801 14 Si 0.962 3.038 15 H -0.251 1.251 16 H -0.266 1.266 17 H -0.250 1.250 18 N -0.732 5.732 19 C 0.325 3.675 20 H 0.010 0.990 21 H 0.039 0.961 22 H 0.037 0.963 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.439 0.561 27 H 0.457 0.543 28 H 0.316 0.684 29 H -0.025 1.025 30 H -0.025 1.025 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -0.573 -3.933 8.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.341 5.341 3 C -0.453 4.453 4 C -0.085 4.085 5 C 0.083 3.917 6 N -0.836 5.836 7 S 2.646 3.354 8 O -0.700 6.700 9 O -0.879 6.879 10 C -1.064 5.064 11 H 0.168 0.832 12 C -0.115 4.115 13 N -0.428 5.428 14 Si 0.781 3.219 15 H -0.175 1.175 16 H -0.190 1.190 17 H -0.174 1.174 18 N -0.476 5.476 19 C 0.107 3.893 20 H 0.028 0.972 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.110 0.890 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.279 0.721 27 H 0.324 0.676 28 H 0.128 0.872 29 H -0.008 1.008 30 H -0.009 1.009 Dipole moment (debyes) X Y Z Total from point charges 7.867 0.512 -3.821 8.761 hybrid contribution -0.499 -0.933 -0.217 1.080 sum 7.368 -0.420 -4.038 8.413 Atomic orbital electron populations 1.20677 0.81973 0.99293 0.98105 1.43283 1.01555 1.06532 1.82702 1.20485 0.88609 0.89750 1.46415 1.21452 0.88924 0.92776 1.05353 1.19618 0.80118 0.91976 1.00017 1.54399 1.19799 1.24302 1.85125 1.08636 0.74415 0.77212 0.75092 1.85881 1.92155 1.55377 1.36576 1.93509 1.83313 1.54831 1.56232 1.29636 1.00854 1.13624 1.62316 0.83182 1.25283 0.99759 0.97514 0.88934 1.69856 1.26922 1.15567 1.30470 0.85454 0.76298 0.78682 0.81458 1.17487 1.18987 1.17381 1.74072 1.14327 1.07553 1.51650 1.21697 0.86209 0.87959 0.93402 0.97165 0.94184 0.94455 0.89027 0.92122 0.91485 0.72080 0.67615 0.87177 1.00806 1.00883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 68. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.01 11.22 59.85 0.67 3.69 16 2 N -0.62 -16.25 3.25 -183.58 -0.60 -16.85 16 3 C -0.32 -8.54 11.48 -15.10 -0.17 -8.71 16 4 C 0.06 1.54 7.11 -80.13 -0.57 0.97 16 5 C 0.21 4.12 6.88 -5.19 -0.04 4.08 16 6 N -1.07 -17.78 6.04 -11.66 -0.07 -17.85 16 7 S 2.53 39.22 4.69 -107.50 -0.50 38.72 16 8 O -0.84 -10.92 13.56 -58.38 -0.79 -11.71 16 9 O -0.89 -18.25 18.10 -58.38 -1.06 -19.30 16 10 C -0.92 -14.31 9.99 30.60 0.31 -14.00 16 11 H 0.15 2.01 7.81 -52.49 -0.41 1.60 16 12 C 0.11 1.83 5.46 -17.82 -0.10 1.73 16 13 N -0.80 -14.41 13.16 55.43 0.73 -13.68 16 14 Si 0.96 12.68 29.54 -169.99 -5.02 7.66 16 15 H -0.25 -3.18 7.11 56.52 0.40 -2.78 16 16 H -0.27 -3.44 7.11 56.52 0.40 -3.03 16 17 H -0.25 -3.39 7.11 56.52 0.40 -2.99 16 18 N -0.73 -19.63 10.75 -57.81 -0.62 -20.25 16 19 C 0.32 8.82 8.46 -62.97 -0.53 8.28 16 20 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.44 7.45 7.87 -34.47 -0.27 7.18 16 27 H 0.46 3.11 9.03 67.38 0.61 3.72 16 28 H 0.32 5.07 8.31 -40.82 -0.34 4.73 16 29 H -0.02 -0.66 8.14 -51.93 -0.42 -1.09 16 30 H -0.03 -0.70 8.14 -51.93 -0.42 -1.12 16 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -36.22 279.09 -6.75 -42.97 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -2.59 Total: 10.05 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.43 Total: -3.96 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.56 Total: -68.62 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.85 Total: -31.02 kcal Atomic # 14 Polarization: 12.68 SS G_CDS: -5.02 Total: 7.66 kcal Atomic # 16 Polarization: 39.22 SS G_CDS: -0.50 Total: 38.72 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -36.22 -6.75 -42.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.534 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds