Wall clock time and date at job start Mon Mar 30 2020 03:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.29060 * 126.38924 * 2 1 4 4 C 1.47152 * 109.78480 * 180.15501 * 3 2 1 5 5 C 1.50706 * 125.10770 * 179.78427 * 4 3 2 6 6 N 1.46496 * 109.47494 * 179.72085 * 5 4 3 7 7 S 1.65598 * 120.00165 * 164.99791 * 6 5 4 8 8 O 1.52200 * 109.47220 * 300.00073 * 7 6 5 9 9 O 1.42092 * 109.47083 * 60.00235 * 7 6 5 10 10 C 1.76201 * 109.47133 * 180.02562 * 7 6 5 11 11 H 1.07998 * 119.99984 * 0.02562 * 10 7 6 12 12 C 1.37874 * 119.99978 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00030 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00082 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46889 * 60.00389 * 14 12 10 16 16 H 1.48499 * 109.47185 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.46976 * 300.00278 * 14 12 10 18 18 N 1.29066 * 109.79050 * 359.52160 * 4 3 2 19 19 C 1.46856 * 107.21845 * 0.26418 * 18 4 3 20 20 H 1.08998 * 109.46886 * 270.35657 * 1 2 3 21 21 H 1.09001 * 109.46626 * 30.35280 * 1 2 3 22 22 H 1.08997 * 109.46839 * 150.35302 * 1 2 3 23 23 H 1.07994 * 125.11027 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.46596 * 299.72075 * 5 4 3 25 25 H 1.09004 * 109.46950 * 59.71894 * 5 4 3 26 26 H 0.97003 * 119.99860 * 345.00610 * 6 5 4 27 27 H 0.96697 * 114.00293 * 300.00161 * 8 7 6 28 28 H 0.97000 * 119.99709 * 179.97438 * 13 12 10 29 29 H 1.08997 * 110.14972 * 119.13016 * 19 18 4 30 30 H 1.09005 * 110.14578 * 240.87602 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2307 1.0389 0.0000 4 6 3.6409 0.6184 -0.0037 5 6 4.8238 1.5522 -0.0095 6 7 6.0629 0.7708 -0.0052 7 16 7.5021 1.4986 -0.3810 8 8 7.4304 2.0666 -1.7913 9 8 7.7561 2.5499 0.5406 10 6 8.8014 0.3118 -0.2918 11 1 8.5812 -0.7107 -0.0229 12 6 10.0990 0.6884 -0.5662 13 7 10.3671 1.9335 -0.8940 14 14 11.4767 -0.5697 -0.4708 15 1 11.2109 -1.6687 -1.4336 16 1 12.7672 0.0830 -0.8080 17 1 11.5471 -1.1233 0.9053 18 7 3.7126 -0.6702 0.0042 19 6 2.3362 -1.1822 0.0073 20 1 -0.3633 0.0064 1.0276 21 1 -0.3632 0.8868 -0.5193 22 1 -0.3633 -0.8931 -0.5083 23 1 1.8880 2.0631 -0.0004 24 1 4.7903 2.1754 -0.9031 25 1 4.7907 2.1859 0.8769 26 1 6.0403 -0.1730 0.2176 27 1 7.2591 1.4036 -2.4741 28 1 11.2801 2.1984 -1.0867 29 1 2.1581 -1.7855 -0.8829 30 1 2.1580 -1.7745 0.9049 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:13 Heat of formation + Delta-G solvation = -2.102953 kcal Electronic energy + Delta-G solvation = -15939.812443 eV Core-core repulsion = 13092.393235 eV Total energy + Delta-G solvation = -2847.419208 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.87217 -39.44348 -37.56452 -36.58478 -35.70228 -33.14862 -29.38115 -28.78087 -27.58802 -25.72236 -22.39006 -21.53798 -21.06708 -19.94606 -19.12640 -18.00005 -17.51968 -16.93409 -16.42554 -16.02459 -15.91144 -15.30791 -15.00177 -14.63364 -14.34714 -13.97826 -13.79813 -13.58790 -13.39514 -13.16321 -13.04275 -12.65393 -12.49589 -12.09059 -11.71696 -11.47688 -11.10005 -10.46716 -9.63125 -9.59380 -9.27224 -8.19637 -5.20610 -1.45047 1.12639 1.38844 1.45435 1.59641 1.99128 2.22588 2.40135 2.66468 2.99410 3.38193 3.85423 4.38966 4.44060 4.61008 4.63282 4.76052 4.82550 4.82938 4.84253 5.15495 5.17063 5.30226 5.49168 5.58946 5.93509 6.22634 6.92822 7.25207 7.68079 8.00814 8.55468 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.047795 B = 0.005382 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.698316 B = 5201.170438 C = 5580.207032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.637 5.637 3 C -0.357 4.357 4 C 0.054 3.946 5 C 0.208 3.792 6 N -1.065 6.065 7 S 2.569 3.431 8 O -0.836 6.836 9 O -0.943 6.943 10 C -0.930 4.930 11 H 0.171 0.829 12 C 0.081 3.919 13 N -0.840 5.840 14 Si 1.011 2.989 15 H -0.239 1.239 16 H -0.265 1.265 17 H -0.256 1.256 18 N -0.743 5.743 19 C 0.317 3.683 20 H 0.021 0.979 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.439 0.561 27 H 0.481 0.519 28 H 0.321 0.679 29 H -0.030 1.030 30 H -0.038 1.038 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.729 -1.025 -4.653 9.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.358 5.358 3 C -0.490 4.490 4 C -0.093 4.093 5 C 0.082 3.918 6 N -0.832 5.832 7 S 2.683 3.317 8 O -0.699 6.699 9 O -0.932 6.932 10 C -1.071 5.071 11 H 0.189 0.811 12 C -0.142 4.142 13 N -0.468 5.468 14 Si 0.828 3.172 15 H -0.162 1.162 16 H -0.189 1.189 17 H -0.180 1.180 18 N -0.487 5.487 19 C 0.098 3.902 20 H 0.039 0.961 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.279 0.721 27 H 0.354 0.646 28 H 0.133 0.867 29 H -0.014 1.014 30 H -0.022 1.022 Dipole moment (debyes) X Y Z Total from point charges 8.456 0.053 -4.564 9.609 hybrid contribution -0.739 -0.773 -0.030 1.070 sum 7.716 -0.721 -4.594 9.009 Atomic orbital electron populations 1.20922 0.79415 1.01013 0.99160 1.43582 1.03412 1.05754 1.83074 1.20909 0.89799 0.90310 1.47949 1.22140 0.90519 0.92979 1.03617 1.19575 0.79413 0.91234 1.01599 1.54200 1.19328 1.23945 1.85709 1.07466 0.73585 0.76060 0.74580 1.85836 1.91989 1.55802 1.36255 1.93443 1.83847 1.57029 1.58842 1.29868 1.00484 1.13917 1.62788 0.81129 1.26078 1.01456 0.98521 0.88102 1.69907 1.27688 1.16962 1.32256 0.84765 0.74177 0.77094 0.81203 1.16177 1.18880 1.17991 1.74051 1.14275 1.08470 1.51926 1.21676 0.87214 0.88523 0.92759 0.96058 0.92605 0.92545 0.88586 0.89295 0.91235 0.72131 0.64647 0.86709 1.01372 1.02189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 5.56 11.22 127.77 1.43 6.99 16 2 N -0.64 -32.92 3.25 -734.73 -2.39 -35.31 16 3 C -0.36 -18.88 11.48 87.44 1.00 -17.87 16 4 C 0.05 2.67 7.11 45.31 0.32 2.99 16 5 C 0.21 7.89 6.88 85.64 0.59 8.48 16 6 N -1.07 -33.72 6.04 -190.79 -1.15 -34.87 16 7 S 2.57 75.51 4.69 -56.49 -0.27 75.25 16 8 O -0.84 -19.80 13.56 -126.85 -1.72 -21.52 16 9 O -0.94 -38.04 18.10 -126.85 -2.30 -40.33 16 10 C -0.93 -27.00 9.99 67.73 0.68 -26.33 16 11 H 0.17 4.14 7.81 -2.91 -0.02 4.12 16 12 C 0.08 2.52 5.46 84.65 0.46 2.98 16 13 N -0.84 -29.38 13.16 21.45 0.28 -29.09 16 14 Si 1.01 23.97 29.54 68.60 2.03 26.00 16 15 H -0.24 -5.16 7.11 99.48 0.71 -4.46 16 16 H -0.26 -6.16 7.11 99.48 0.71 -5.46 16 17 H -0.26 -6.27 7.11 99.48 0.71 -5.57 16 18 N -0.74 -39.33 10.75 -336.81 -3.62 -42.95 16 19 C 0.32 17.13 8.46 170.69 1.44 18.58 16 20 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 24 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.44 14.23 7.87 -96.74 -0.76 13.47 16 27 H 0.48 5.18 9.03 -87.93 -0.79 4.38 16 28 H 0.32 10.08 8.31 -92.71 -0.77 9.31 16 29 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 30 H -0.04 -2.11 8.14 -2.38 -0.02 -2.13 16 Total: -1.00 -76.36 279.09 -3.59 -79.95 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.39 Total: 27.08 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.93 Total: -4.18 kcal Atomic # 7 Polarization: -135.35 SS G_CDS: -6.88 Total: -142.23 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -4.02 Total: -61.86 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: 2.03 Total: 26.00 kcal Atomic # 16 Polarization: 75.51 SS G_CDS: -0.27 Total: 75.25 kcal Total: -76.36 -3.59 -79.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.846 kcal (2) G-P(sol) polarization free energy of solvation -76.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds