Wall clock time and date at job start Mon Mar 30 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.50702 * 109.47523 * 65.55429 * 3 2 1 5 5 N 1.27940 * 119.99999 * 275.00612 * 4 3 2 6 6 Si 1.86800 * 119.99629 * 95.00011 * 4 3 2 7 7 H 1.48494 * 109.47188 * 90.00502 * 6 4 3 8 8 H 1.48501 * 109.46737 * 210.00202 * 6 4 3 9 9 H 1.48502 * 109.47167 * 330.00024 * 6 4 3 10 10 S 1.81402 * 109.47006 * 185.55912 * 3 2 1 11 11 O 1.52195 * 108.33171 * 186.08339 * 10 3 2 12 12 O 1.42099 * 114.64756 * 307.18460 * 10 3 2 13 13 N 1.65600 * 108.33323 * 68.29393 * 10 3 2 14 14 C 1.34382 * 125.34808 * 21.83319 * 13 10 3 15 15 C 1.34381 * 108.31802 * 179.97438 * 14 13 10 16 16 N 1.37663 * 106.94736 * 359.77766 * 15 14 13 17 17 H 0.96990 * 126.49590 * 180.24578 * 16 15 14 18 18 C 1.31196 * 125.34453 * 201.80683 * 13 10 3 19 19 N 1.38493 * 125.79620 * 359.97438 * 18 13 10 20 20 H 1.08997 * 109.47033 * 294.31175 * 1 2 3 21 21 H 1.08994 * 109.46915 * 54.31061 * 1 2 3 22 22 H 1.08999 * 109.47201 * 174.31066 * 1 2 3 23 23 H 1.08992 * 109.47074 * 239.99632 * 2 1 3 24 24 H 1.08999 * 109.47098 * 119.99621 * 2 1 3 25 25 H 1.09000 * 109.46834 * 305.55802 * 3 2 1 26 26 H 0.97008 * 119.99925 * 180.02562 * 5 4 3 27 27 H 0.96701 * 114.00041 * 304.93541 * 11 10 3 28 28 H 1.08008 * 125.84555 * 359.93839 * 14 13 10 29 29 H 1.08007 * 126.52568 * 180.02562 * 15 14 13 30 30 H 0.97006 * 119.99555 * 359.97438 * 19 18 13 31 31 H 0.96996 * 120.00113 * 179.72294 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6532 2.1122 1.2934 5 7 0.4986 2.6499 1.4150 6 14 2.8593 2.1570 2.7191 7 1 3.6938 3.3816 2.6232 8 1 2.1100 2.1679 4.0012 9 1 3.7328 0.9572 2.6664 10 16 3.8465 1.4452 -0.1657 11 8 4.3393 2.8768 -0.0106 12 8 4.5294 0.6327 0.7791 13 7 4.2309 0.9121 -1.6856 14 6 3.4091 0.9350 -2.7486 15 6 4.0675 0.4238 -3.8026 16 7 5.3277 0.0862 -3.3633 17 1 6.0387 -0.3041 -3.8951 18 6 5.3859 0.4013 -2.0413 19 7 6.4808 0.2197 -1.2129 20 1 -0.3633 0.4231 0.9365 21 1 -0.3633 0.5995 -0.8346 22 1 -0.3633 -1.0226 -0.1019 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.5977 1.9842 -0.8360 26 1 0.2497 3.0813 2.2475 27 1 3.9245 3.5036 -0.6191 28 1 2.3930 1.3012 -2.7547 29 1 3.6826 0.3045 -4.8047 30 1 6.4315 0.4802 -0.2797 31 1 7.2957 -0.1713 -1.5648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:58 Heat of formation + Delta-G solvation = 41.899161 kcal Electronic energy + Delta-G solvation = -17721.109443 eV Core-core repulsion = 14861.942571 eV Total energy + Delta-G solvation = -2859.166873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.70055 -37.27040 -37.13844 -36.31580 -35.37402 -34.86541 -33.58072 -29.66943 -28.15159 -24.02045 -23.25726 -22.96896 -20.77764 -20.10994 -19.98483 -18.20827 -17.95908 -17.29866 -17.12602 -16.86432 -15.89615 -15.71127 -15.42275 -15.09333 -14.64932 -14.41182 -13.94828 -13.74694 -13.19909 -13.09459 -12.48675 -12.34175 -12.25166 -12.12902 -11.98386 -11.65438 -11.46226 -10.94418 -10.64372 -10.15848 -9.35743 -9.17014 -6.25844 0.69949 1.05118 1.15862 1.25739 1.44358 1.74901 2.00488 2.12314 2.41112 2.48737 2.83739 3.63715 3.87836 4.04880 4.18648 4.26154 4.52681 4.68324 4.75469 4.93344 5.17036 5.28622 5.34022 5.35699 5.42015 5.61554 5.74466 5.81418 5.86698 6.12348 6.33818 6.50307 7.35022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.530 4.530 4 C 0.046 3.954 5 N -0.641 5.641 6 Si 0.811 3.189 7 H -0.229 1.229 8 H -0.252 1.252 9 H -0.170 1.170 10 S 1.733 4.267 11 O -0.889 6.889 12 O -0.948 6.948 13 N -0.635 5.635 14 C 0.024 3.976 15 C -0.034 4.034 16 N -0.585 5.585 17 H 0.425 0.575 18 C 0.556 3.444 19 N -0.824 5.824 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.323 0.677 27 H 0.420 0.580 28 H 0.196 0.804 29 H 0.195 0.805 30 H 0.438 0.562 31 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.073 -1.754 -11.030 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.626 4.626 4 C -0.204 4.204 5 N -0.254 5.254 6 Si 0.628 3.372 7 H -0.152 1.152 8 H -0.176 1.176 9 H -0.091 1.091 10 S 1.820 4.180 11 O -0.742 6.742 12 O -0.939 6.939 13 N -0.406 5.406 14 C -0.111 4.111 15 C -0.162 4.162 16 N -0.201 5.201 17 H 0.266 0.734 18 C 0.199 3.801 19 N -0.383 5.383 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.280 0.720 28 H 0.213 0.787 29 H 0.212 0.788 30 H 0.277 0.723 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.403 -1.681 -9.730 10.811 hybrid contribution 0.150 0.034 1.039 1.050 sum 4.552 -1.647 -8.691 9.948 Atomic orbital electron populations 1.21807 0.96243 1.00001 1.02380 1.20761 0.95742 0.93660 1.01187 1.29996 1.37897 0.98103 0.96646 1.29747 0.96394 0.92183 1.02123 1.68373 1.18182 1.09080 1.29778 0.87498 0.82561 0.87726 0.79441 1.15218 1.17582 1.09056 1.80843 0.79753 0.72270 0.85090 1.85140 1.75184 1.45405 1.68452 1.92730 1.70729 1.63416 1.67027 1.64457 1.06896 1.41885 1.27412 1.22225 0.99416 1.03295 0.86177 1.22532 0.84009 1.08127 1.01515 1.43389 1.15462 1.53076 1.08164 0.73449 1.21474 0.88158 0.89394 0.81065 1.42139 1.11849 1.70434 1.13896 0.92833 0.92700 0.93994 0.91884 0.92759 0.87103 0.86121 0.72035 0.78671 0.78779 0.72345 0.75480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.45 37.16 0.35 -0.07 16 2 C -0.07 -0.19 5.39 -26.73 -0.14 -0.33 16 3 C -0.53 -1.21 2.18 -27.88 -0.06 -1.27 16 4 C 0.05 0.22 4.45 -13.90 -0.06 0.16 16 5 N -0.64 -3.27 12.58 56.23 0.71 -2.56 16 6 Si 0.81 5.36 25.59 -169.99 -4.35 1.01 16 7 H -0.23 -1.71 7.11 56.52 0.40 -1.31 16 8 H -0.25 -1.70 7.11 56.52 0.40 -1.30 16 9 H -0.17 -1.47 5.38 56.52 0.30 -1.16 16 10 S 1.73 3.79 3.35 -107.50 -0.36 3.43 16 11 O -0.89 -2.21 12.17 -58.56 -0.71 -2.93 16 12 O -0.95 -6.53 12.86 -58.56 -0.75 -7.28 16 13 N -0.63 1.41 3.00 -13.92 -0.04 1.37 16 14 C 0.02 -0.13 10.34 -17.80 -0.18 -0.31 16 15 C -0.03 0.24 12.04 -16.29 -0.20 0.04 16 16 N -0.59 3.88 6.24 -13.15 -0.08 3.80 16 17 H 0.43 -4.01 8.96 -40.82 -0.37 -4.38 16 18 C 0.56 -1.77 8.91 -319.61 -2.85 -4.61 16 19 N -0.82 2.65 8.96 30.21 0.27 2.92 16 20 H 0.05 0.26 6.84 -51.93 -0.36 -0.10 16 21 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 22 H 0.04 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.06 0.02 7.71 -51.93 -0.40 -0.38 16 24 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.11 -0.02 7.43 -51.92 -0.39 -0.40 16 26 H 0.32 1.32 8.23 -40.82 -0.34 0.99 16 27 H 0.42 -1.07 9.03 67.38 0.61 -0.46 16 28 H 0.20 -1.50 7.24 -52.48 -0.38 -1.88 16 29 H 0.20 -1.95 8.06 -52.48 -0.42 -2.37 16 30 H 0.44 -0.11 6.70 -40.82 -0.27 -0.39 16 31 H 0.41 -2.80 8.95 -40.82 -0.37 -3.16 16 LS Contribution 260.68 15.07 3.93 3.93 Total: 0.00 -12.47 260.68 -7.37 -19.85 By element: Atomic # 1 Polarization: -14.29 SS G_CDS: -2.84 Total: -17.13 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.14 Total: -6.40 kcal Atomic # 7 Polarization: 4.67 SS G_CDS: 0.85 Total: 5.52 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.47 Total: -10.21 kcal Atomic # 14 Polarization: 5.36 SS G_CDS: -4.35 Total: 1.01 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -0.36 Total: 3.43 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -12.47 -7.37 -19.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.745 kcal (2) G-P(sol) polarization free energy of solvation -12.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds