Wall clock time and date at job start Mon Mar 30 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.50702 * 109.47523 * 65.55429 * 3 2 1 5 5 N 1.27940 * 119.99999 * 275.00612 * 4 3 2 6 6 Si 1.86800 * 119.99629 * 95.00011 * 4 3 2 7 7 H 1.48494 * 109.47188 * 90.00502 * 6 4 3 8 8 H 1.48501 * 109.46737 * 210.00202 * 6 4 3 9 9 H 1.48502 * 109.47167 * 330.00024 * 6 4 3 10 10 S 1.81402 * 109.47006 * 185.55912 * 3 2 1 11 11 O 1.52195 * 108.33171 * 186.08339 * 10 3 2 12 12 O 1.42099 * 114.64756 * 307.18460 * 10 3 2 13 13 N 1.65600 * 108.33323 * 68.29393 * 10 3 2 14 14 C 1.34382 * 125.34808 * 21.83319 * 13 10 3 15 15 C 1.34381 * 108.31802 * 179.97438 * 14 13 10 16 16 N 1.37663 * 106.94736 * 359.77766 * 15 14 13 17 17 H 0.96990 * 126.49590 * 180.24578 * 16 15 14 18 18 C 1.31196 * 125.34453 * 201.80683 * 13 10 3 19 19 N 1.38493 * 125.79620 * 359.97438 * 18 13 10 20 20 H 1.08997 * 109.47033 * 294.31175 * 1 2 3 21 21 H 1.08994 * 109.46915 * 54.31061 * 1 2 3 22 22 H 1.08999 * 109.47201 * 174.31066 * 1 2 3 23 23 H 1.08992 * 109.47074 * 239.99632 * 2 1 3 24 24 H 1.08999 * 109.47098 * 119.99621 * 2 1 3 25 25 H 1.09000 * 109.46834 * 305.55802 * 3 2 1 26 26 H 0.97008 * 119.99925 * 180.02562 * 5 4 3 27 27 H 0.96701 * 114.00041 * 304.93541 * 11 10 3 28 28 H 1.08008 * 125.84555 * 359.93839 * 14 13 10 29 29 H 1.08007 * 126.52568 * 180.02562 * 15 14 13 30 30 H 0.97006 * 119.99555 * 359.97438 * 19 18 13 31 31 H 0.96996 * 120.00113 * 179.72294 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6532 2.1122 1.2934 5 7 0.4986 2.6499 1.4150 6 14 2.8593 2.1570 2.7191 7 1 3.6938 3.3816 2.6232 8 1 2.1100 2.1679 4.0012 9 1 3.7328 0.9572 2.6664 10 16 3.8465 1.4452 -0.1657 11 8 4.3393 2.8768 -0.0106 12 8 4.5294 0.6327 0.7791 13 7 4.2309 0.9121 -1.6856 14 6 3.4091 0.9350 -2.7486 15 6 4.0675 0.4238 -3.8026 16 7 5.3277 0.0862 -3.3633 17 1 6.0387 -0.3041 -3.8951 18 6 5.3859 0.4013 -2.0413 19 7 6.4808 0.2197 -1.2129 20 1 -0.3633 0.4231 0.9365 21 1 -0.3633 0.5995 -0.8346 22 1 -0.3633 -1.0226 -0.1019 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.5977 1.9842 -0.8360 26 1 0.2497 3.0813 2.2475 27 1 3.9245 3.5036 -0.6191 28 1 2.3930 1.3012 -2.7547 29 1 3.6826 0.3045 -4.8047 30 1 6.4315 0.4802 -0.2797 31 1 7.2957 -0.1713 -1.5648 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:58 Heat of formation + Delta-G solvation = 35.923638 kcal Electronic energy + Delta-G solvation = -17721.368561 eV Core-core repulsion = 14861.942571 eV Total energy + Delta-G solvation = -2859.425991 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.37352 -37.52142 -37.24502 -36.31821 -35.30874 -34.56807 -33.81369 -29.29043 -28.30563 -23.81254 -23.12912 -22.87458 -20.56955 -20.20740 -20.05320 -18.21201 -17.98118 -17.07972 -16.92395 -16.61570 -16.06500 -15.85264 -15.46161 -14.84100 -14.72905 -14.48189 -14.11365 -13.77819 -13.49600 -13.24151 -12.74199 -12.64395 -12.34489 -11.94297 -11.90999 -11.78469 -11.59875 -11.25437 -11.03579 -10.33392 -9.74093 -8.76760 -6.30886 0.77091 0.98743 0.98859 1.17272 1.40351 1.58687 1.63957 1.87700 2.25932 2.72096 2.95985 3.64374 3.88897 4.29717 4.47849 4.51036 4.57382 4.74714 4.82743 5.00367 5.08287 5.19030 5.26733 5.44450 5.50785 5.60389 5.70526 5.77470 6.12683 6.47335 6.65842 6.80022 6.99180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.534 4.534 4 C 0.059 3.941 5 N -0.644 5.644 6 Si 0.819 3.181 7 H -0.245 1.245 8 H -0.260 1.260 9 H -0.205 1.205 10 S 1.754 4.246 11 O -0.909 6.909 12 O -1.002 7.002 13 N -0.653 5.653 14 C 0.001 3.999 15 C -0.011 4.011 16 N -0.566 5.566 17 H 0.443 0.557 18 C 0.534 3.466 19 N -0.829 5.829 20 H 0.030 0.970 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.025 0.975 25 H 0.141 0.859 26 H 0.325 0.675 27 H 0.436 0.564 28 H 0.220 0.780 29 H 0.233 0.767 30 H 0.424 0.576 31 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -1.892 -14.060 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.629 4.629 4 C -0.193 4.193 5 N -0.257 5.257 6 Si 0.640 3.360 7 H -0.169 1.169 8 H -0.185 1.185 9 H -0.126 1.126 10 S 1.839 4.161 11 O -0.765 6.765 12 O -0.993 6.993 13 N -0.425 5.425 14 C -0.132 4.132 15 C -0.139 4.139 16 N -0.183 5.183 17 H 0.286 0.714 18 C 0.177 3.823 19 N -0.388 5.388 20 H 0.049 0.951 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.107 0.893 24 H 0.044 0.956 25 H 0.158 0.842 26 H 0.141 0.859 27 H 0.298 0.702 28 H 0.237 0.763 29 H 0.250 0.750 30 H 0.260 0.740 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.890 -1.830 -12.813 13.515 hybrid contribution 0.453 0.004 1.775 1.832 sum 4.343 -1.826 -11.038 12.001 Atomic orbital electron populations 1.21805 0.96394 1.00416 1.01656 1.20777 0.95498 0.93912 1.01065 1.30192 1.39135 0.97684 0.95850 1.29631 0.95160 0.92314 1.02158 1.68399 1.17724 1.09568 1.30014 0.87423 0.82507 0.85304 0.80788 1.16910 1.18521 1.12625 1.82473 0.79328 0.71429 0.82917 1.85126 1.75973 1.46330 1.69090 1.92638 1.72647 1.65718 1.68295 1.62512 1.08047 1.42932 1.29058 1.22667 1.00438 1.04746 0.85339 1.23253 0.82875 1.05294 1.02492 1.43252 1.16298 1.51914 1.06788 0.71413 1.20872 0.87915 0.90998 0.82545 1.42060 1.12650 1.70818 1.13296 0.95089 0.91380 0.93436 0.89331 0.95568 0.84167 0.85853 0.70156 0.76304 0.75021 0.73997 0.73834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.45 71.98 0.68 -0.09 16 2 C -0.07 -0.37 5.39 30.60 0.17 -0.21 16 3 C -0.53 -2.42 2.18 29.85 0.06 -2.35 16 4 C 0.06 0.62 4.45 88.68 0.40 1.02 16 5 N -0.64 -6.76 12.58 24.11 0.30 -6.46 16 6 Si 0.82 13.11 25.59 68.60 1.76 14.86 16 7 H -0.25 -4.40 7.11 99.48 0.71 -3.69 16 8 H -0.26 -4.23 7.11 99.48 0.71 -3.53 16 9 H -0.20 -4.42 5.38 99.48 0.54 -3.89 16 10 S 1.75 9.47 3.35 -56.49 -0.19 9.28 16 11 O -0.91 -5.67 12.17 -126.68 -1.54 -7.21 16 12 O -1.00 -16.59 12.86 -126.68 -1.63 -18.22 16 13 N -0.65 3.21 3.00 -197.94 -0.59 2.62 16 14 C 0.00 -0.01 10.34 83.42 0.86 0.85 16 15 C -0.01 0.19 12.04 82.90 1.00 1.19 16 16 N -0.57 8.71 6.24 -195.53 -1.22 7.50 16 17 H 0.44 -9.42 8.96 -92.72 -0.83 -10.25 16 18 C 0.53 -3.60 8.91 260.37 2.32 -1.28 16 19 N -0.83 4.54 8.96 -58.34 -0.52 4.02 16 20 H 0.03 0.31 6.84 -2.39 -0.02 0.29 16 21 H 0.07 0.17 8.14 -2.39 -0.02 0.16 16 22 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 23 H 0.09 -0.05 7.71 -2.39 -0.02 -0.07 16 24 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.14 -0.30 7.43 -2.39 -0.02 -0.32 16 26 H 0.33 2.90 8.23 -92.70 -0.76 2.13 16 27 H 0.44 -2.02 9.03 -87.93 -0.79 -2.82 16 28 H 0.22 -4.05 7.24 -2.91 -0.02 -4.07 16 29 H 0.23 -5.80 8.06 -2.91 -0.02 -5.82 16 30 H 0.42 0.71 6.70 -92.70 -0.62 0.09 16 31 H 0.43 -5.50 8.95 -92.71 -0.83 -6.33 16 Total: 0.00 -31.99 260.68 -0.20 -32.19 By element: Atomic # 1 Polarization: -35.65 SS G_CDS: -2.05 Total: -37.69 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.49 Total: -0.87 kcal Atomic # 7 Polarization: 9.70 SS G_CDS: -2.03 Total: 7.67 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -3.17 Total: -25.43 kcal Atomic # 14 Polarization: 13.11 SS G_CDS: 1.76 Total: 14.86 kcal Atomic # 16 Polarization: 9.47 SS G_CDS: -0.19 Total: 9.28 kcal Total: -31.99 -0.20 -32.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.110 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds