Wall clock time and date at job start Mon Mar 30 2020 03:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.29066 * 126.38658 * 2 1 4 4 C 1.50695 * 125.10633 * 0.03750 * 3 2 1 5 5 N 1.46504 * 109.47060 * 183.47353 * 4 3 2 6 6 S 1.65602 * 119.99937 * 163.83994 * 5 4 3 7 7 O 1.52192 * 109.47097 * 60.27721 * 6 5 4 8 8 O 1.42103 * 109.46914 * 300.27692 * 6 5 4 9 9 C 1.76205 * 109.46861 * 180.27860 * 6 5 4 10 10 H 1.07997 * 120.00032 * 359.97438 * 9 6 5 11 11 C 1.37875 * 119.99416 * 180.02562 * 9 6 5 12 12 N 1.31520 * 119.99747 * 179.97438 * 11 9 6 13 13 Si 1.86797 * 120.00583 * 359.97438 * 11 9 6 14 14 H 1.48498 * 109.47066 * 89.99803 * 13 11 9 15 15 H 1.48498 * 109.47418 * 210.00025 * 13 11 9 16 16 H 1.48505 * 109.47012 * 330.00115 * 13 11 9 17 17 C 1.47152 * 109.78553 * 180.29943 * 3 2 1 18 18 N 1.29069 * 109.78632 * 359.51925 * 17 3 2 19 19 C 1.46848 * 107.22182 * 0.45222 * 18 17 3 20 20 H 1.09000 * 109.47193 * 84.90804 * 1 2 3 21 21 H 1.08998 * 109.47366 * 204.91156 * 1 2 3 22 22 H 1.09004 * 109.46974 * 324.90694 * 1 2 3 23 23 H 1.08999 * 109.47186 * 63.47650 * 4 3 2 24 24 H 1.08997 * 109.47061 * 303.47446 * 4 3 2 25 25 H 0.97005 * 119.99565 * 344.12085 * 5 4 3 26 26 H 0.96705 * 114.00170 * 59.99869 * 7 6 5 27 27 H 0.96995 * 120.00306 * 179.97438 * 12 11 9 28 28 H 1.07999 * 125.10966 * 179.70436 * 17 3 2 29 29 H 1.08997 * 110.15521 * 240.57381 * 19 18 17 30 30 H 1.09005 * 110.15076 * 118.83081 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2306 1.0390 0.0000 4 6 1.7523 2.4680 0.0008 5 7 2.9047 3.3688 -0.0831 6 16 2.6860 4.9564 -0.5003 7 8 1.7748 5.6275 0.5174 8 8 2.0919 5.0300 -1.7891 9 6 4.2449 5.7774 -0.5243 10 1 5.1461 5.2321 -0.2859 11 6 4.3139 7.1162 -0.8465 12 7 5.4774 7.7292 -0.8640 13 14 2.7551 8.0595 -1.2582 14 1 2.1868 8.6426 -0.0163 15 1 3.0739 9.1489 -2.2157 16 1 1.7651 7.1369 -1.8699 17 6 3.6408 0.6186 -0.0072 18 7 3.7126 -0.6701 -0.0013 19 6 2.3363 -1.1822 -0.0008 20 1 -0.3633 0.0912 -1.0236 21 1 -0.3634 -0.9320 0.4329 22 1 -0.3633 0.8409 0.5908 23 1 1.2023 2.6666 0.9207 24 1 1.0990 2.6330 -0.8560 25 1 3.7962 3.0342 0.1017 26 1 2.1179 5.6146 1.4214 27 1 5.5261 8.6709 -1.0910 28 1 4.4884 1.2878 -0.0133 29 1 2.1584 -1.7803 0.8929 30 1 2.1576 -1.7796 -0.8948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:16 Heat of formation + Delta-G solvation = 47.506966 kcal Electronic energy + Delta-G solvation = -16259.785774 eV Core-core repulsion = 13414.517813 eV Total energy + Delta-G solvation = -2845.267961 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.95551 -37.72030 -35.70171 -34.53509 -33.85468 -32.47010 -27.86355 -27.30576 -26.12723 -24.32799 -20.76476 -20.22490 -19.37463 -18.31637 -17.80675 -16.51257 -15.90471 -15.74935 -14.81637 -14.73634 -14.14356 -13.59281 -13.55537 -13.31296 -13.09556 -12.58838 -12.39131 -12.22714 -12.00719 -11.67471 -11.64956 -11.52262 -10.74642 -10.43342 -10.09381 -9.86682 -9.50119 -8.99100 -8.50754 -8.44225 -7.58418 -6.29757 -3.41873 -0.16022 2.50779 2.55492 2.74409 2.81574 3.32226 3.70042 3.88540 4.05867 4.42357 4.68951 5.56574 5.63433 5.85729 5.88984 6.02287 6.07409 6.20019 6.26877 6.29624 6.42591 6.57902 6.67083 6.87605 7.40625 7.48857 7.78363 7.99022 8.31104 8.99622 9.49221 9.55678 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.045142 B = 0.006468 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.112497 B = 4328.099724 C = 4737.742098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.589 5.589 3 C -0.223 4.223 4 C 0.229 3.771 5 N -1.062 6.062 6 S 2.364 3.636 7 O -0.881 6.881 8 O -0.928 6.928 9 C -0.946 4.946 10 H 0.147 0.853 11 C 0.138 3.862 12 N -0.777 5.777 13 Si 0.791 3.209 14 H -0.245 1.245 15 H -0.244 1.244 16 H -0.200 1.200 17 C 0.119 3.881 18 N -0.642 5.642 19 C 0.285 3.715 20 H 0.027 0.973 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.411 0.589 26 H 0.448 0.552 27 H 0.295 0.705 28 H 0.134 0.866 29 H 0.025 0.975 30 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 1.590 4.862 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.312 5.312 3 C -0.359 4.359 4 C 0.103 3.897 5 N -0.822 5.822 6 S 2.494 3.506 7 O -0.735 6.735 8 O -0.916 6.916 9 C -1.084 5.084 10 H 0.164 0.836 11 C -0.087 4.087 12 N -0.403 5.403 13 Si 0.609 3.391 14 H -0.169 1.169 15 H -0.167 1.167 16 H -0.122 1.122 17 C -0.063 4.063 18 N -0.378 5.378 19 C 0.069 3.931 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.247 0.753 26 H 0.314 0.686 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.042 0.958 30 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.777 1.865 3.969 8.071 hybrid contribution -0.239 1.089 -0.016 1.115 sum -7.016 2.953 3.952 8.577 Atomic orbital electron populations 1.20987 0.80209 1.00841 0.99569 1.43686 1.02880 1.05995 1.78639 1.20345 0.90737 0.87175 1.37639 1.19213 0.86293 0.86512 0.97637 1.56315 1.16293 1.22323 1.87229 1.20729 0.77216 0.74693 0.77932 1.85843 1.68871 1.85340 1.33474 1.93419 1.77704 1.84677 1.35774 1.29614 1.10030 1.07037 1.61735 0.83551 1.24672 0.97795 0.96192 0.90078 1.69928 1.24816 1.12778 1.32815 0.87970 0.83383 0.84973 0.82728 1.16868 1.16703 1.12185 1.23642 0.92344 0.93104 0.97163 1.74636 1.15370 1.09720 1.38040 1.22427 0.85587 0.88584 0.96547 0.95522 0.92814 0.93006 0.94183 0.94361 0.75290 0.68599 0.89386 0.84916 0.95805 0.96912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.97 10.90 59.85 0.65 2.63 16 2 N -0.59 -11.68 3.25 -178.66 -0.58 -12.26 16 3 C -0.22 -4.53 6.99 -80.14 -0.56 -5.09 16 4 C 0.23 3.99 6.10 -5.19 -0.03 3.96 16 5 N -1.06 -16.83 6.01 -11.66 -0.07 -16.90 16 6 S 2.36 40.47 4.20 -107.50 -0.45 40.02 16 7 O -0.88 -12.13 12.02 -58.38 -0.70 -12.83 16 8 O -0.93 -20.66 15.65 -58.38 -0.91 -21.57 16 9 C -0.95 -18.54 10.53 30.60 0.32 -18.22 16 10 H 0.15 2.91 8.06 -52.49 -0.42 2.48 16 11 C 0.14 2.95 5.47 -17.82 -0.10 2.85 16 12 N -0.78 -17.39 13.96 55.43 0.77 -16.62 16 13 Si 0.79 15.14 26.25 -169.99 -4.46 10.67 16 14 H -0.24 -4.30 7.11 56.52 0.40 -3.90 16 15 H -0.24 -4.54 7.11 56.52 0.40 -4.14 16 16 H -0.20 -4.14 5.28 56.52 0.30 -3.84 16 17 C 0.12 2.52 11.19 -15.10 -0.17 2.35 16 18 N -0.64 -14.76 11.84 -62.01 -0.73 -15.49 16 19 C 0.28 6.00 8.46 -62.99 -0.53 5.47 16 20 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.41 6.01 6.69 -34.48 -0.23 5.78 16 26 H 0.45 3.30 9.03 67.38 0.61 3.90 16 27 H 0.29 5.95 8.31 -40.82 -0.34 5.61 16 28 H 0.13 2.44 6.78 -52.49 -0.36 2.08 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -31.90 267.81 -6.10 -38.01 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.58 Total: 8.98 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.42 Total: -6.04 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.61 Total: -61.27 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.62 Total: -34.40 kcal Atomic # 14 Polarization: 15.14 SS G_CDS: -4.46 Total: 10.67 kcal Atomic # 16 Polarization: 40.47 SS G_CDS: -0.45 Total: 40.02 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.90 -6.10 -38.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.513 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds