Wall clock time and date at job start Mon Mar 30 2020 03:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.29066 * 126.38658 * 2 1 4 4 C 1.50695 * 125.10633 * 0.03750 * 3 2 1 5 5 N 1.46504 * 109.47060 * 183.47353 * 4 3 2 6 6 S 1.65602 * 119.99937 * 163.83994 * 5 4 3 7 7 O 1.52192 * 109.47097 * 60.27721 * 6 5 4 8 8 O 1.42103 * 109.46914 * 300.27692 * 6 5 4 9 9 C 1.76205 * 109.46861 * 180.27860 * 6 5 4 10 10 H 1.07997 * 120.00032 * 359.97438 * 9 6 5 11 11 C 1.37875 * 119.99416 * 180.02562 * 9 6 5 12 12 N 1.31520 * 119.99747 * 179.97438 * 11 9 6 13 13 Si 1.86797 * 120.00583 * 359.97438 * 11 9 6 14 14 H 1.48498 * 109.47066 * 89.99803 * 13 11 9 15 15 H 1.48498 * 109.47418 * 210.00025 * 13 11 9 16 16 H 1.48505 * 109.47012 * 330.00115 * 13 11 9 17 17 C 1.47152 * 109.78553 * 180.29943 * 3 2 1 18 18 N 1.29069 * 109.78632 * 359.51925 * 17 3 2 19 19 C 1.46848 * 107.22182 * 0.45222 * 18 17 3 20 20 H 1.09000 * 109.47193 * 84.90804 * 1 2 3 21 21 H 1.08998 * 109.47366 * 204.91156 * 1 2 3 22 22 H 1.09004 * 109.46974 * 324.90694 * 1 2 3 23 23 H 1.08999 * 109.47186 * 63.47650 * 4 3 2 24 24 H 1.08997 * 109.47061 * 303.47446 * 4 3 2 25 25 H 0.97005 * 119.99565 * 344.12085 * 5 4 3 26 26 H 0.96705 * 114.00170 * 59.99869 * 7 6 5 27 27 H 0.96995 * 120.00306 * 179.97438 * 12 11 9 28 28 H 1.07999 * 125.10966 * 179.70436 * 17 3 2 29 29 H 1.08997 * 110.15521 * 240.57381 * 19 18 17 30 30 H 1.09005 * 110.15076 * 118.83081 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2306 1.0390 0.0000 4 6 1.7523 2.4680 0.0008 5 7 2.9047 3.3688 -0.0831 6 16 2.6860 4.9564 -0.5003 7 8 1.7748 5.6275 0.5174 8 8 2.0919 5.0300 -1.7891 9 6 4.2449 5.7774 -0.5243 10 1 5.1461 5.2321 -0.2859 11 6 4.3139 7.1162 -0.8465 12 7 5.4774 7.7292 -0.8640 13 14 2.7551 8.0595 -1.2582 14 1 2.1868 8.6426 -0.0163 15 1 3.0739 9.1489 -2.2157 16 1 1.7651 7.1369 -1.8699 17 6 3.6408 0.6186 -0.0072 18 7 3.7126 -0.6701 -0.0013 19 6 2.3363 -1.1822 -0.0008 20 1 -0.3633 0.0912 -1.0236 21 1 -0.3634 -0.9320 0.4329 22 1 -0.3633 0.8409 0.5908 23 1 1.2023 2.6666 0.9207 24 1 1.0990 2.6330 -0.8560 25 1 3.7962 3.0342 0.1017 26 1 2.1179 5.6146 1.4214 27 1 5.5261 8.6709 -1.0910 28 1 4.4884 1.2878 -0.0133 29 1 2.1584 -1.7803 0.8929 30 1 2.1576 -1.7796 -0.8948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:15 Heat of formation + Delta-G solvation = 16.597455 kcal Electronic energy + Delta-G solvation = -16261.126111 eV Core-core repulsion = 13414.517813 eV Total energy + Delta-G solvation = -2846.608298 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.98617 -39.65190 -37.85847 -36.30391 -35.65905 -33.54754 -29.47811 -29.09757 -27.24148 -25.76559 -22.64410 -21.65139 -21.19618 -19.68967 -19.45634 -18.25604 -17.72723 -17.18043 -16.45852 -16.08874 -15.68894 -15.25874 -15.12298 -14.76072 -14.71291 -14.35217 -13.86778 -13.61163 -13.40898 -13.25524 -13.22431 -12.80875 -12.18507 -12.07976 -11.83790 -11.50100 -11.08016 -10.50829 -9.68906 -9.57718 -9.32200 -8.19469 -5.19325 -1.68316 0.89646 1.06359 1.12361 1.26894 1.76446 1.86419 2.16150 2.74124 2.81752 3.35760 3.93811 4.50596 4.57255 4.67918 4.71004 4.82168 4.85164 4.85931 4.88967 5.11085 5.16142 5.23661 5.53389 5.66689 5.82822 5.97067 6.91704 7.25778 7.78387 8.04118 8.59670 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.045142 B = 0.006468 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.112497 B = 4328.099724 C = 4737.742098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.631 5.631 3 C -0.340 4.340 4 C 0.253 3.747 5 N -1.054 6.054 6 S 2.556 3.444 7 O -0.838 6.838 8 O -0.936 6.936 9 C -0.934 4.934 10 H 0.161 0.839 11 C 0.112 3.888 12 N -0.786 5.786 13 Si 0.808 3.192 14 H -0.204 1.204 15 H -0.234 1.234 16 H -0.213 1.213 17 C 0.055 3.945 18 N -0.766 5.766 19 C 0.316 3.684 20 H 0.019 0.981 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.436 0.564 26 H 0.491 0.509 27 H 0.311 0.689 28 H 0.130 0.870 29 H -0.027 1.027 30 H -0.040 1.040 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 12.217 5.001 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.353 5.353 3 C -0.454 4.454 4 C 0.127 3.873 5 N -0.822 5.822 6 S 2.671 3.329 7 O -0.703 6.703 8 O -0.924 6.924 9 C -1.075 5.075 10 H 0.179 0.821 11 C -0.115 4.115 12 N -0.412 5.412 13 Si 0.623 3.377 14 H -0.126 1.126 15 H -0.157 1.157 16 H -0.135 1.135 17 C -0.111 4.111 18 N -0.508 5.508 19 C 0.098 3.902 20 H 0.037 0.963 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.276 0.724 26 H 0.367 0.633 27 H 0.123 0.877 28 H 0.148 0.852 29 H -0.011 1.011 30 H -0.023 1.023 Dipole moment (debyes) X Y Z Total from point charges -7.434 12.011 4.231 14.745 hybrid contribution 0.142 0.442 0.063 0.469 sum -7.292 12.454 4.293 15.056 Atomic orbital electron populations 1.20970 0.79313 1.01392 0.99197 1.43322 1.03139 1.04950 1.83932 1.19735 0.90064 0.87643 1.47979 1.18915 0.83759 0.85960 0.98649 1.53980 1.18605 1.22148 1.87430 1.07280 0.76423 0.72881 0.76360 1.85905 1.65807 1.82116 1.36464 1.93601 1.78159 1.84796 1.35890 1.29132 1.07368 1.07833 1.63198 0.82146 1.25082 0.99846 0.96481 0.90082 1.69882 1.26088 1.14212 1.31048 0.87699 0.80225 0.85006 0.84789 1.12559 1.15713 1.13460 1.23431 0.92931 0.93028 1.01753 1.74429 1.15191 1.10948 1.50197 1.21675 0.87069 0.88775 0.92699 0.96301 0.92596 0.91787 0.91725 0.94808 0.72425 0.63334 0.87654 0.85239 1.01057 1.02333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 67. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 4.93 10.90 127.77 1.39 6.32 16 2 N -0.63 -30.31 3.25 -719.17 -2.34 -32.65 16 3 C -0.34 -15.69 6.99 45.31 0.32 -15.37 16 4 C 0.25 8.43 6.10 85.63 0.52 8.95 16 5 N -1.05 -27.51 6.01 -190.79 -1.15 -28.66 16 6 S 2.56 60.28 4.20 -56.49 -0.24 60.04 16 7 O -0.84 -11.77 12.02 -126.85 -1.52 -13.30 16 8 O -0.94 -31.86 15.65 -126.85 -1.99 -33.85 16 9 C -0.93 -26.57 10.53 67.73 0.71 -25.85 16 10 H 0.16 4.72 8.06 -2.91 -0.02 4.69 16 11 C 0.11 3.61 5.47 84.65 0.46 4.08 16 12 N -0.79 -28.26 13.96 21.45 0.30 -27.96 16 13 Si 0.81 21.97 26.25 68.60 1.80 23.77 16 14 H -0.20 -4.49 7.11 99.48 0.71 -3.78 16 15 H -0.23 -6.48 7.11 99.48 0.71 -5.77 16 16 H -0.21 -6.33 5.28 99.48 0.53 -5.80 16 17 C 0.05 2.76 11.19 87.44 0.98 3.74 16 18 N -0.77 -44.19 11.84 -350.11 -4.14 -48.33 16 19 C 0.32 17.29 8.46 170.69 1.44 18.73 16 20 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.06 1.97 7.79 -2.38 -0.02 1.96 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.44 11.05 6.69 -96.74 -0.65 10.40 16 26 H 0.49 -0.10 9.03 -87.93 -0.79 -0.89 16 27 H 0.31 9.95 8.31 -92.71 -0.77 9.18 16 28 H 0.13 5.62 6.78 -2.91 -0.02 5.60 16 29 H -0.03 -1.48 8.14 -2.39 -0.02 -1.50 16 30 H -0.04 -2.24 8.14 -2.38 -0.02 -2.26 16 Total: -1.00 -79.22 267.81 -3.90 -83.12 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.45 Total: 17.22 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.83 Total: 0.60 kcal Atomic # 7 Polarization: -130.27 SS G_CDS: -7.33 Total: -137.60 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -3.51 Total: -47.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: 1.80 Total: 23.77 kcal Atomic # 16 Polarization: 60.28 SS G_CDS: -0.24 Total: 60.04 kcal Total: -79.22 -3.90 -83.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.718 kcal (2) G-P(sol) polarization free energy of solvation -79.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds