Wall clock time and date at job start Mon Mar 30 2020 03:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.29059 * 126.39018 * 2 1 4 4 C 1.50704 * 125.10862 * 0.02580 * 3 2 1 5 5 N 1.46494 * 109.47368 * 174.44113 * 4 3 2 6 6 S 1.65602 * 120.00032 * 163.73678 * 5 4 3 7 7 O 1.52202 * 109.47129 * 300.00389 * 6 5 4 8 8 O 1.42101 * 109.47069 * 60.00414 * 6 5 4 9 9 C 1.76201 * 109.47211 * 180.02562 * 6 5 4 10 10 H 1.08001 * 119.99824 * 359.97438 * 9 6 5 11 11 C 1.37871 * 120.00218 * 180.02562 * 9 6 5 12 12 N 1.31515 * 120.00448 * 179.97438 * 11 9 6 13 13 Si 1.86810 * 119.99926 * 0.02562 * 11 9 6 14 14 H 1.48496 * 109.47144 * 89.99900 * 13 11 9 15 15 H 1.48501 * 109.47087 * 210.00066 * 13 11 9 16 16 H 1.48498 * 109.46971 * 329.99860 * 13 11 9 17 17 C 1.47150 * 109.78720 * 180.29690 * 3 2 1 18 18 N 1.29063 * 109.78856 * 359.51522 * 17 3 2 19 19 C 1.46850 * 107.21741 * 0.45593 * 18 17 3 20 20 H 1.09001 * 109.47180 * 94.82862 * 1 2 3 21 21 H 1.09002 * 109.47867 * 214.82916 * 1 2 3 22 22 H 1.09005 * 109.47417 * 334.82998 * 1 2 3 23 23 H 1.08995 * 109.47021 * 294.44767 * 4 3 2 24 24 H 1.09001 * 109.46629 * 54.44155 * 4 3 2 25 25 H 0.97003 * 120.00300 * 343.74346 * 5 4 3 26 26 H 0.96705 * 113.99632 * 299.99788 * 7 6 5 27 27 H 0.97005 * 119.99940 * 179.97438 * 12 11 9 28 28 H 1.08009 * 125.10639 * 179.69599 * 17 3 2 29 29 H 1.09003 * 110.14962 * 240.56962 * 19 18 17 30 30 H 1.09002 * 110.14715 * 118.83202 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2306 1.0389 0.0000 4 6 1.7524 2.4681 0.0006 5 7 2.9011 3.3674 0.1342 6 16 2.7420 4.9741 -0.2339 7 8 2.3265 5.1221 -1.6906 8 8 1.7515 5.5559 0.6026 9 6 4.2820 5.7908 0.0230 10 1 5.1382 5.2319 0.3708 11 6 4.3937 7.1435 -0.2191 12 7 5.5430 7.7533 -0.0269 13 14 2.9122 8.1106 -0.8187 14 1 2.1574 8.6340 0.3481 15 1 3.3694 9.2446 -1.6616 16 1 2.0321 7.2221 -1.6194 17 6 3.6407 0.6185 -0.0072 18 7 3.7125 -0.6702 -0.0012 19 6 2.3362 -1.1822 -0.0007 20 1 -0.3633 -0.0865 -1.0240 21 1 -0.3635 -0.8435 0.5869 22 1 -0.3634 0.9301 0.4371 23 1 1.2335 2.6779 -0.9347 24 1 1.0707 2.6227 0.8369 25 1 3.7549 3.0217 0.4382 26 1 2.9576 4.7464 -2.3197 27 1 5.6217 8.7049 -0.1975 28 1 4.4885 1.2877 -0.0133 29 1 2.1583 -1.7802 0.8931 30 1 2.1576 -1.7797 -0.8947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:19 Heat of formation + Delta-G solvation = 45.079079 kcal Electronic energy + Delta-G solvation = -16265.479218 eV Core-core repulsion = 13420.105976 eV Total energy + Delta-G solvation = -2845.373242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.99818 -37.69759 -35.74025 -34.54311 -33.86868 -32.50263 -27.88868 -27.32521 -26.15612 -24.33893 -20.73286 -20.24468 -19.39594 -18.35306 -17.83215 -16.51490 -15.94470 -15.72204 -14.88149 -14.71387 -14.17327 -13.68874 -13.55783 -13.35275 -13.03663 -12.69373 -12.39753 -12.05648 -11.99557 -11.69415 -11.58650 -11.54051 -10.81784 -10.48709 -10.15930 -9.95717 -9.53945 -9.01484 -8.55099 -8.46907 -7.59869 -6.31581 -3.47236 -0.14310 2.45938 2.56497 2.69683 2.87383 3.29930 3.68133 3.85221 4.01208 4.39731 4.65363 5.55024 5.63487 5.83385 5.88253 6.01233 6.06127 6.21815 6.24780 6.30129 6.41348 6.54917 6.64911 6.85999 7.39564 7.48170 7.76952 7.94912 8.27812 8.95633 9.48057 9.51779 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.045504 B = 0.006454 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.184747 B = 4337.498943 C = 4734.978434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.589 5.589 3 C -0.219 4.219 4 C 0.232 3.768 5 N -1.062 6.062 6 S 2.370 3.630 7 O -0.876 6.876 8 O -0.936 6.936 9 C -0.947 4.947 10 H 0.148 0.852 11 C 0.138 3.862 12 N -0.776 5.776 13 Si 0.811 3.189 14 H -0.239 1.239 15 H -0.250 1.250 16 H -0.216 1.216 17 C 0.118 3.882 18 N -0.642 5.642 19 C 0.284 3.716 20 H 0.031 0.969 21 H 0.047 0.953 22 H 0.056 0.944 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.408 0.592 26 H 0.447 0.553 27 H 0.295 0.705 28 H 0.135 0.865 29 H 0.015 0.985 30 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 -0.184 -4.188 6.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.312 5.312 3 C -0.355 4.355 4 C 0.107 3.893 5 N -0.821 5.821 6 S 2.501 3.499 7 O -0.730 6.730 8 O -0.923 6.923 9 C -1.086 5.086 10 H 0.165 0.835 11 C -0.088 4.088 12 N -0.403 5.403 13 Si 0.630 3.370 14 H -0.162 1.162 15 H -0.174 1.174 16 H -0.139 1.139 17 C -0.064 4.064 18 N -0.378 5.378 19 C 0.068 3.932 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.245 0.755 26 H 0.313 0.687 27 H 0.107 0.893 28 H 0.152 0.848 29 H 0.032 0.968 30 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.178 0.358 -4.163 6.654 hybrid contribution -0.198 0.921 0.014 0.942 sum -5.376 1.279 -4.149 6.910 Atomic orbital electron populations 1.21008 0.80129 1.00932 0.99616 1.43683 1.02940 1.05988 1.78609 1.20395 0.90823 0.87312 1.36964 1.19056 0.86295 0.86289 0.97645 1.56535 1.20217 1.22401 1.82984 1.20202 0.79058 0.75867 0.74751 1.86029 1.63557 1.83627 1.39827 1.93331 1.60807 1.76580 1.61612 1.29531 1.16868 1.03724 1.58453 0.83476 1.24683 0.96744 0.96336 0.91062 1.69932 1.23460 1.12768 1.34096 0.87716 0.81970 0.84586 0.82679 1.16246 1.17400 1.13925 1.23686 0.92320 0.93132 0.97278 1.74643 1.15376 1.09708 1.38045 1.22421 0.85547 0.88577 0.96612 0.95100 0.93457 0.92550 0.94433 0.95382 0.75479 0.68691 0.89348 0.84820 0.96780 0.95891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.94 11.03 59.84 0.66 2.61 16 2 N -0.59 -11.47 3.25 -178.66 -0.58 -12.05 16 3 C -0.22 -4.32 6.99 -80.14 -0.56 -4.88 16 4 C 0.23 4.08 6.05 -5.19 -0.03 4.05 16 5 N -1.06 -16.89 5.96 -11.66 -0.07 -16.96 16 6 S 2.37 40.71 4.19 -107.50 -0.45 40.26 16 7 O -0.88 -12.58 11.05 -58.38 -0.64 -13.22 16 8 O -0.94 -20.47 16.58 -58.38 -0.97 -21.44 16 9 C -0.95 -18.52 10.53 30.60 0.32 -18.20 16 10 H 0.15 2.91 8.06 -52.49 -0.42 2.49 16 11 C 0.14 2.91 5.47 -17.82 -0.10 2.82 16 12 N -0.78 -17.29 13.96 55.43 0.77 -16.51 16 13 Si 0.81 15.46 26.30 -169.99 -4.47 10.99 16 14 H -0.24 -4.87 7.11 56.52 0.40 -4.47 16 15 H -0.25 -4.43 7.11 56.52 0.40 -4.02 16 16 H -0.22 -3.92 5.17 56.52 0.29 -3.62 16 17 C 0.12 2.40 11.13 -15.10 -0.17 2.23 16 18 N -0.64 -14.36 11.84 -62.01 -0.73 -15.10 16 19 C 0.28 5.88 8.46 -62.99 -0.53 5.34 16 20 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.81 7.27 -51.93 -0.38 0.44 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.03 0.52 7.81 -51.93 -0.41 0.11 16 25 H 0.41 6.00 6.87 -34.47 -0.24 5.76 16 26 H 0.45 3.68 9.03 67.38 0.61 4.29 16 27 H 0.30 5.91 8.31 -40.82 -0.34 5.58 16 28 H 0.13 2.33 6.94 -52.48 -0.36 1.97 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -31.09 267.18 -6.08 -37.17 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -2.56 Total: 8.88 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.41 Total: -6.04 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.61 Total: -60.63 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.61 Total: -34.66 kcal Atomic # 14 Polarization: 15.46 SS G_CDS: -4.47 Total: 10.99 kcal Atomic # 16 Polarization: 40.71 SS G_CDS: -0.45 Total: 40.26 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.09 -6.08 -37.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.252 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds