Wall clock time and date at job start Mon Mar 30 2020 03:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40090 * 125.89171 * 2 1 4 4 H 0.96995 * 126.04244 * 0.02562 * 3 2 1 5 5 C 1.34947 * 107.92190 * 180.02562 * 3 2 1 6 6 C 1.35321 * 107.74891 * 359.74870 * 5 3 2 7 7 C 1.30840 * 125.90132 * 180.02562 * 2 1 3 8 8 S 1.76195 * 125.89582 * 359.96828 * 7 2 1 9 9 O 1.52205 * 109.46817 * 210.00779 * 8 7 2 10 10 O 1.42104 * 109.47361 * 330.00166 * 8 7 2 11 11 N 1.65599 * 109.47305 * 90.00733 * 8 7 2 12 12 C 1.46499 * 120.00012 * 180.02562 * 11 8 7 13 13 C 1.50701 * 109.46992 * 164.99696 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 H 1.09005 * 109.46760 * 269.99534 * 1 2 3 22 22 H 1.09000 * 109.47638 * 29.99919 * 1 2 3 23 23 H 1.09006 * 109.47037 * 150.00330 * 1 2 3 24 24 H 1.08005 * 126.12777 * 179.97438 * 5 3 2 25 25 H 1.07996 * 126.04172 * 180.27042 * 6 5 3 26 26 H 0.96701 * 113.99477 * 299.99474 * 9 8 7 27 27 H 0.97001 * 119.99797 * 359.97438 * 11 8 7 28 28 H 1.09002 * 109.47391 * 44.99686 * 12 11 8 29 29 H 1.09001 * 109.46813 * 284.99743 * 12 11 8 30 30 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2863 1.1349 0.0000 4 1 1.9855 2.0570 0.0004 5 6 3.5699 0.7186 -0.0006 6 6 3.5647 -0.6346 0.0047 7 6 2.2322 -1.0598 -0.0005 8 16 1.6818 -2.7336 -0.0004 9 8 2.7042 -3.6038 0.7167 10 8 0.4319 -2.8213 0.6700 11 7 1.5088 -3.2579 -1.5617 12 6 1.0583 -4.6260 -1.8293 13 6 0.6326 -4.7418 -3.2703 14 1 0.6922 -3.8824 -3.9217 15 6 0.1681 -5.9452 -3.7573 16 7 0.0961 -6.9917 -2.9642 17 14 -0.3588 -6.0889 -5.5437 18 1 0.8069 -6.4868 -6.3731 19 1 -1.4254 -7.1152 -5.6641 20 1 -0.8769 -4.7791 -6.0139 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8901 -0.5138 24 1 4.4448 1.3519 -0.0011 25 1 4.4355 -1.2734 0.0099 26 1 3.5827 -3.5923 0.3128 27 1 1.7052 -2.6589 -2.2990 28 1 0.2150 -4.8642 -1.1811 29 1 1.8743 -5.3219 -1.6344 30 1 -0.2311 -7.8382 -3.3068 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659270.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:05 Heat of formation + Delta-G solvation = 10.014631 kcal Electronic energy + Delta-G solvation = -16335.093716 eV Core-core repulsion = 13488.199965 eV Total energy + Delta-G solvation = -2846.893750 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.67672 -36.98963 -35.71385 -35.61192 -34.52117 -33.35371 -32.24339 -28.09744 -28.05037 -24.04950 -23.01070 -22.47014 -20.03941 -19.79115 -18.88764 -17.34974 -16.98442 -16.68824 -16.45694 -15.93048 -15.59286 -14.76608 -14.58564 -14.20193 -14.08553 -13.90458 -13.88127 -13.55466 -13.12963 -12.83913 -12.68999 -12.26617 -12.09311 -11.57365 -11.15587 -10.86478 -10.80395 -10.65795 -9.85613 -8.82516 -8.14560 -6.27620 -5.76571 0.25024 0.56190 1.38815 1.44654 1.55080 1.71854 2.44093 2.88237 3.06193 3.16823 3.39868 3.92743 4.09909 4.26996 4.34765 4.61019 4.79523 4.80951 5.21009 5.25083 5.57362 5.64198 5.74116 6.03571 6.16703 6.34467 6.50758 6.81677 6.96147 7.38680 7.65174 8.99028 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.006229 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.057283 B = 4493.970456 C = 4721.905055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.269 5.269 3 N -0.479 5.479 4 H 0.450 0.550 5 C 0.160 3.840 6 C -0.252 4.252 7 C -0.225 4.225 8 S 1.865 4.135 9 O -0.925 6.925 10 O -1.051 7.051 11 N -1.070 6.070 12 C 0.254 3.746 13 C -0.539 4.539 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.944 5.944 17 Si 0.982 3.018 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.261 1.261 21 H 0.093 0.907 22 H 0.129 0.871 23 H 0.078 0.922 24 H 0.263 0.737 25 H 0.189 0.811 26 H 0.429 0.571 27 H 0.371 0.629 28 H -0.056 1.056 29 H -0.034 1.034 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 26.202 3.701 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.043 5.043 3 N -0.189 5.189 4 H 0.300 0.700 5 C 0.011 3.989 6 C -0.281 4.281 7 C -0.437 4.437 8 S 1.936 4.064 9 O -0.777 6.777 10 O -1.038 7.038 11 N -0.817 5.817 12 C 0.124 3.876 13 C -0.578 4.578 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.585 5.585 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.185 1.185 21 H 0.112 0.888 22 H 0.147 0.853 23 H 0.097 0.903 24 H 0.279 0.721 25 H 0.206 0.794 26 H 0.290 0.710 27 H 0.198 0.802 28 H -0.038 1.038 29 H -0.017 1.017 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.747 25.812 4.917 28.026 hybrid contribution -0.774 -0.290 -1.326 1.563 sum 8.972 25.522 3.591 27.291 Atomic orbital electron populations 1.22602 0.72610 1.06027 1.05754 1.48708 1.05941 0.97464 1.52171 1.46991 1.03732 1.05590 1.62545 0.70036 1.23598 0.86900 0.97132 0.91278 1.21689 0.96079 0.95487 1.14873 1.42353 1.01020 1.11755 0.88607 1.75459 0.79367 0.77772 0.73774 1.85234 1.34669 1.84823 1.72980 1.92536 1.48715 1.86256 1.76310 1.57894 1.81682 1.15103 1.26980 1.18307 0.89744 0.85390 0.94201 1.22008 1.42468 0.96520 0.96772 0.91211 1.26274 0.95801 0.95316 1.03714 1.70183 1.48217 1.01940 1.38133 0.85220 0.78125 0.78140 0.78039 1.18914 1.20973 1.18485 0.88842 0.85254 0.90290 0.72143 0.79364 0.70984 0.80231 1.03838 1.01653 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 10.58 127.77 1.35 2.88 16 2 N -0.27 -5.60 3.89 -365.89 -1.42 -7.02 16 3 N -0.48 -3.82 7.23 -57.58 -0.42 -4.23 16 4 H 0.45 -0.31 8.96 -213.33 -1.91 -2.22 16 5 C 0.16 0.84 11.99 83.54 1.00 1.84 16 6 C -0.25 -3.86 10.76 21.99 0.24 -3.63 16 7 C -0.22 -6.09 7.13 85.24 0.61 -5.48 16 8 S 1.86 83.51 5.07 -56.49 -0.29 83.22 16 9 O -0.93 -41.01 13.56 -126.85 -1.72 -42.73 16 10 O -1.05 -61.25 16.46 -126.85 -2.09 -63.34 16 11 N -1.07 -54.29 6.07 -190.79 -1.16 -55.44 16 12 C 0.25 16.69 6.07 85.63 0.52 17.21 16 13 C -0.54 -34.80 9.27 25.60 0.24 -34.56 16 14 H 0.07 4.17 7.65 -2.91 -0.02 4.14 16 15 C -0.01 -0.92 5.46 84.66 0.46 -0.45 16 16 N -0.94 -64.75 13.29 21.45 0.28 -64.47 16 17 Si 0.98 47.97 29.54 68.60 2.03 50.00 16 18 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 22 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.08 2.51 6.87 -2.38 -0.02 2.49 16 24 H 0.26 -1.99 8.06 -2.91 -0.02 -2.02 16 25 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 26 H 0.43 13.27 9.03 -87.93 -0.79 12.48 16 27 H 0.37 16.49 8.54 -96.75 -0.83 15.67 16 28 H -0.06 -4.30 8.14 -2.39 -0.02 -4.32 16 29 H -0.03 -2.39 8.14 -2.39 -0.02 -2.40 16 30 H 0.26 16.70 8.31 -92.71 -0.77 15.93 16 Total: -1.00 -114.01 275.72 -2.71 -116.72 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.35 Total: 9.49 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 4.42 Total: -22.19 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -2.71 Total: -131.17 kcal Atomic # 8 Polarization: -102.27 SS G_CDS: -3.81 Total: -106.07 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Atomic # 16 Polarization: 83.51 SS G_CDS: -0.29 Total: 83.22 kcal Total: -114.01 -2.71 -116.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659270.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.736 kcal (2) G-P(sol) polarization free energy of solvation -114.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -116.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds