Wall clock time and date at job start Mon Mar 30 2020 03:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40087 * 125.89873 * 2 1 4 4 H 0.96999 * 126.03255 * 0.02562 * 3 2 1 5 5 C 1.34945 * 107.92490 * 180.02562 * 3 2 1 6 6 C 1.35317 * 107.74912 * 359.75662 * 5 3 2 7 7 C 1.30842 * 125.89592 * 180.02562 * 2 1 3 8 8 S 1.76194 * 125.89900 * 359.96776 * 7 2 1 9 9 O 1.52201 * 109.46944 * 155.66082 * 8 7 2 10 10 O 1.42101 * 109.46954 * 35.67035 * 8 7 2 11 11 N 1.65592 * 109.47496 * 275.66563 * 8 7 2 12 12 C 1.46505 * 120.00176 * 180.27651 * 11 8 7 13 13 C 1.50699 * 109.46841 * 164.72377 * 12 11 8 14 14 H 1.07995 * 120.00416 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99508 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00233 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99493 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47124 * 60.00641 * 17 15 13 19 19 H 1.48510 * 109.46658 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47189 * 299.99791 * 17 15 13 21 21 H 1.09000 * 109.47147 * 264.44404 * 1 2 3 22 22 H 1.09005 * 109.46980 * 24.44027 * 1 2 3 23 23 H 1.09003 * 109.47080 * 144.44483 * 1 2 3 24 24 H 1.08000 * 126.12508 * 180.02562 * 5 3 2 25 25 H 1.07993 * 126.04284 * 180.27084 * 6 5 3 26 26 H 0.96706 * 113.99697 * 65.33610 * 9 8 7 27 27 H 0.97006 * 119.99854 * 0.02562 * 11 8 7 28 28 H 1.08999 * 109.46811 * 284.71995 * 12 11 8 29 29 H 1.08993 * 109.46975 * 44.72336 * 12 11 8 30 30 H 0.96997 * 120.00290 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2864 1.1348 0.0000 4 1 1.9855 2.0569 0.0004 5 6 3.5700 0.7184 -0.0006 6 6 3.5647 -0.6348 0.0045 7 6 2.2321 -1.0599 -0.0005 8 16 1.6817 -2.7337 -0.0004 9 8 2.7649 -3.6240 -0.5924 10 8 0.4994 -2.8435 -0.7811 11 7 1.3635 -3.2101 1.5532 12 6 0.8943 -4.5721 1.8202 13 6 1.0371 -4.8735 3.2899 14 1 1.4370 -4.1253 3.9582 15 6 0.6563 -6.1042 3.7813 16 7 0.1681 -7.0147 2.9678 17 14 0.8341 -6.4780 5.6029 18 1 0.0241 -5.5121 6.3878 19 1 0.3583 -7.8586 5.8736 20 1 2.2614 -6.3610 5.9953 21 1 -0.3633 -0.0995 1.0228 22 1 -0.3633 0.9356 -0.4252 23 1 -0.3633 -0.8361 -0.5976 24 1 4.4448 1.3517 -0.0003 25 1 4.4354 -1.2736 0.0096 26 1 3.5744 -3.6623 -0.0647 27 1 1.4912 -2.5886 2.2869 28 1 -0.1533 -4.6585 1.5318 29 1 1.4894 -5.2808 1.2445 30 1 -0.0995 -7.8806 3.3134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:08 Heat of formation + Delta-G solvation = 51.989386 kcal Electronic energy + Delta-G solvation = -16330.851102 eV Core-core repulsion = 13485.777514 eV Total energy + Delta-G solvation = -2845.073588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45464 -35.90724 -34.29024 -33.63208 -33.39876 -31.35558 -31.12944 -27.03479 -25.94139 -22.35405 -21.69895 -21.28244 -18.88337 -18.81288 -16.96957 -15.90917 -15.64483 -15.23272 -14.81143 -14.50668 -14.43587 -13.51334 -13.19581 -13.00374 -12.85723 -12.67205 -12.09126 -11.86765 -11.51171 -11.14582 -10.79448 -10.72321 -10.25587 -9.83569 -9.76396 -9.48618 -8.99728 -8.88035 -8.39895 -7.11148 -5.86886 -4.43610 -3.88649 1.19066 1.65310 2.67326 3.39625 3.43601 3.45847 3.85834 4.21346 4.54913 4.73046 4.78610 4.90583 5.25808 5.36117 5.47980 5.59565 5.81957 5.92572 6.07264 6.83680 7.27387 7.36764 7.46178 7.62310 7.90195 8.01094 8.27619 8.63127 8.93930 9.31962 9.76017 11.24700 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.034643 B = 0.006150 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.050481 B = 4551.918034 C = 4712.769665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.268 5.268 3 N -0.517 5.517 4 H 0.417 0.583 5 C 0.098 3.902 6 C -0.222 4.222 7 C -0.253 4.253 8 S 1.961 4.039 9 O -0.891 6.891 10 O -0.966 6.966 11 N -1.101 6.101 12 C 0.240 3.760 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.053 3.947 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.134 0.866 24 H 0.187 0.813 25 H 0.158 0.842 26 H 0.421 0.579 27 H 0.370 0.630 28 H -0.002 1.002 29 H 0.007 0.993 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 20.419 -5.059 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.054 5.054 3 N -0.228 5.228 4 H 0.262 0.738 5 C -0.047 4.047 6 C -0.252 4.252 7 C -0.469 4.469 8 S 2.046 3.954 9 O -0.739 6.739 10 O -0.952 6.952 11 N -0.849 5.849 12 C 0.112 3.888 13 C -0.559 4.559 14 H 0.075 0.925 15 C -0.148 4.148 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.093 0.907 22 H 0.100 0.900 23 H 0.152 0.848 24 H 0.204 0.796 25 H 0.176 0.824 26 H 0.281 0.719 27 H 0.196 0.804 28 H 0.016 0.984 29 H 0.025 0.975 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.939 19.720 -6.344 21.846 hybrid contribution 0.063 0.392 2.468 2.500 sum 7.002 20.112 -3.876 21.646 Atomic orbital electron populations 1.22669 0.73733 1.06354 1.04912 1.48364 1.04419 0.95810 1.56767 1.46870 1.03418 1.04902 1.67650 0.73816 1.22164 0.86364 0.97530 0.98680 1.20996 0.96688 0.93453 1.14028 1.40736 0.98457 1.10290 0.97382 1.62143 0.79650 0.77641 0.76013 1.85265 1.38970 1.83330 1.66322 1.92803 1.46597 1.84643 1.71121 1.57477 1.82580 1.18519 1.26341 1.18755 0.93427 0.81077 0.95501 1.21500 1.41545 0.98852 0.93959 0.92520 1.25070 0.95572 0.96475 0.97671 1.69971 1.43211 1.05677 1.34669 0.86649 0.78274 0.77203 0.85705 1.20464 1.21364 1.20336 0.90685 0.90011 0.84798 0.79575 0.82399 0.71945 0.80368 0.98415 0.97533 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 11.09 59.85 0.66 1.40 16 2 N -0.27 -3.26 3.89 -67.00 -0.26 -3.52 16 3 N -0.52 -4.14 7.23 30.45 0.22 -3.92 16 4 H 0.42 1.82 8.96 -182.61 -1.64 0.18 16 5 C 0.10 0.72 11.99 -17.22 -0.21 0.51 16 6 C -0.22 -2.32 10.74 -40.01 -0.43 -2.75 16 7 C -0.25 -3.63 7.13 -17.36 -0.12 -3.75 16 8 S 1.96 39.67 5.23 -107.50 -0.56 39.10 16 9 O -0.89 -17.63 13.54 -58.38 -0.79 -18.42 16 10 O -0.97 -24.73 16.06 -58.38 -0.94 -25.67 16 11 N -1.10 -25.34 6.07 -11.66 -0.07 -25.41 16 12 C 0.24 7.09 6.07 -5.19 -0.03 7.06 16 13 C -0.52 -15.62 9.27 -34.44 -0.32 -15.94 16 14 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -28.78 13.29 55.43 0.74 -28.04 16 17 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.13 1.98 6.02 -51.93 -0.31 1.67 16 24 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16 25 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.42 5.93 9.03 67.38 0.61 6.54 16 27 H 0.37 7.68 8.54 -34.46 -0.29 7.39 16 28 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 275.10 15.07 4.15 4.15 Total: -1.00 -43.78 275.10 -6.79 -50.57 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -3.71 Total: 5.65 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.54 Total: -11.95 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.63 Total: -60.89 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.73 Total: -44.09 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 39.67 SS G_CDS: -0.56 Total: 39.10 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -43.78 -6.79 -50.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.558 kcal (2) G-P(sol) polarization free energy of solvation -43.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds