Wall clock time and date at job start Mon Mar 30 2020 03:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40087 * 125.89873 * 2 1 4 4 H 0.96999 * 126.03255 * 0.02562 * 3 2 1 5 5 C 1.34945 * 107.92490 * 180.02562 * 3 2 1 6 6 C 1.35317 * 107.74912 * 359.75662 * 5 3 2 7 7 C 1.30842 * 125.89592 * 180.02562 * 2 1 3 8 8 S 1.76194 * 125.89900 * 359.96776 * 7 2 1 9 9 O 1.52201 * 109.46944 * 155.66082 * 8 7 2 10 10 O 1.42101 * 109.46954 * 35.67035 * 8 7 2 11 11 N 1.65592 * 109.47496 * 275.66563 * 8 7 2 12 12 C 1.46505 * 120.00176 * 180.27651 * 11 8 7 13 13 C 1.50699 * 109.46841 * 164.72377 * 12 11 8 14 14 H 1.07995 * 120.00416 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99508 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00233 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99493 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47124 * 60.00641 * 17 15 13 19 19 H 1.48510 * 109.46658 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47189 * 299.99791 * 17 15 13 21 21 H 1.09000 * 109.47147 * 264.44404 * 1 2 3 22 22 H 1.09005 * 109.46980 * 24.44027 * 1 2 3 23 23 H 1.09003 * 109.47080 * 144.44483 * 1 2 3 24 24 H 1.08000 * 126.12508 * 180.02562 * 5 3 2 25 25 H 1.07993 * 126.04284 * 180.27084 * 6 5 3 26 26 H 0.96706 * 113.99697 * 65.33610 * 9 8 7 27 27 H 0.97006 * 119.99854 * 0.02562 * 11 8 7 28 28 H 1.08999 * 109.46811 * 284.71995 * 12 11 8 29 29 H 1.08993 * 109.46975 * 44.72336 * 12 11 8 30 30 H 0.96997 * 120.00290 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2864 1.1348 0.0000 4 1 1.9855 2.0569 0.0004 5 6 3.5700 0.7184 -0.0006 6 6 3.5647 -0.6348 0.0045 7 6 2.2321 -1.0599 -0.0005 8 16 1.6817 -2.7337 -0.0004 9 8 2.7649 -3.6240 -0.5924 10 8 0.4994 -2.8435 -0.7811 11 7 1.3635 -3.2101 1.5532 12 6 0.8943 -4.5721 1.8202 13 6 1.0371 -4.8735 3.2899 14 1 1.4370 -4.1253 3.9582 15 6 0.6563 -6.1042 3.7813 16 7 0.1681 -7.0147 2.9678 17 14 0.8341 -6.4780 5.6029 18 1 0.0241 -5.5121 6.3878 19 1 0.3583 -7.8586 5.8736 20 1 2.2614 -6.3610 5.9953 21 1 -0.3633 -0.0995 1.0228 22 1 -0.3633 0.9356 -0.4252 23 1 -0.3633 -0.8361 -0.5976 24 1 4.4448 1.3517 -0.0003 25 1 4.4354 -1.2736 0.0096 26 1 3.5744 -3.6623 -0.0647 27 1 1.4912 -2.5886 2.2869 28 1 -0.1533 -4.6585 1.5318 29 1 1.4894 -5.2808 1.2445 30 1 -0.0995 -7.8806 3.3134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:08 Heat of formation + Delta-G solvation = 10.188870 kcal Electronic energy + Delta-G solvation = -16332.663708 eV Core-core repulsion = 13485.777514 eV Total energy + Delta-G solvation = -2846.886195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.66853 -36.99590 -35.71417 -35.64360 -34.51556 -33.35976 -32.23678 -28.08058 -28.05250 -24.04308 -23.01811 -22.46347 -20.02486 -19.78517 -18.90580 -17.34783 -16.95719 -16.70005 -16.42947 -15.96315 -15.59733 -14.75768 -14.55432 -14.28497 -14.04630 -13.99188 -13.86228 -13.55655 -13.10462 -12.83644 -12.64264 -12.26466 -12.08945 -11.57166 -11.15572 -10.89735 -10.78995 -10.62761 -9.85818 -8.85609 -8.12613 -6.26763 -5.77496 0.24950 0.58228 1.41272 1.48476 1.56200 1.71879 2.45546 2.88803 3.02221 3.18053 3.39698 3.95130 4.11988 4.27932 4.31635 4.61253 4.78888 4.88953 5.21467 5.23603 5.55306 5.66163 5.74651 6.02424 6.17083 6.31839 6.51768 6.82107 6.95188 7.39421 7.63901 9.00403 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.034643 B = 0.006150 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.050481 B = 4551.918034 C = 4712.769665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.269 5.269 3 N -0.479 5.479 4 H 0.450 0.550 5 C 0.160 3.840 6 C -0.254 4.254 7 C -0.227 4.227 8 S 1.870 4.130 9 O -0.924 6.924 10 O -1.051 7.051 11 N -1.071 6.071 12 C 0.256 3.744 13 C -0.536 4.536 14 H 0.075 0.925 15 C -0.015 4.015 16 N -0.946 5.946 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.258 1.258 21 H 0.090 0.910 22 H 0.132 0.868 23 H 0.094 0.906 24 H 0.262 0.738 25 H 0.186 0.814 26 H 0.429 0.571 27 H 0.371 0.629 28 H -0.065 1.065 29 H -0.033 1.033 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.005 26.005 -3.244 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.043 5.043 3 N -0.189 5.189 4 H 0.300 0.700 5 C 0.010 3.990 6 C -0.283 4.283 7 C -0.439 4.439 8 S 1.942 4.058 9 O -0.776 6.776 10 O -1.038 7.038 11 N -0.817 5.817 12 C 0.126 3.874 13 C -0.575 4.575 14 H 0.093 0.907 15 C -0.211 4.211 16 N -0.586 5.586 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.183 1.183 21 H 0.109 0.891 22 H 0.150 0.850 23 H 0.113 0.887 24 H 0.278 0.722 25 H 0.203 0.797 26 H 0.290 0.710 27 H 0.198 0.802 28 H -0.048 1.048 29 H -0.015 1.015 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.726 25.616 -4.541 27.774 hybrid contribution -0.652 -0.342 1.366 1.552 sum 9.074 25.273 -3.175 27.040 Atomic orbital electron populations 1.22830 0.72559 1.07413 1.05761 1.48516 1.05896 0.97381 1.52518 1.46899 1.03679 1.05530 1.62774 0.69991 1.23566 0.86935 0.97045 0.91406 1.21657 0.96117 0.95477 1.15001 1.42141 1.00827 1.11939 0.89032 1.75225 0.78398 0.77907 0.74264 1.85216 1.40072 1.84773 1.67587 1.92510 1.52139 1.86097 1.73038 1.57865 1.81997 1.14576 1.27256 1.18275 0.89164 0.85074 0.94933 1.21952 1.41515 0.99678 0.94357 0.90693 1.26297 0.94701 0.96059 1.04078 1.70189 1.44420 1.06295 1.37746 0.85254 0.79302 0.77033 0.77811 1.18952 1.21113 1.18256 0.89116 0.84953 0.88721 0.72213 0.79668 0.70996 0.80232 1.04764 1.01537 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 11.09 127.77 1.42 2.57 16 2 N -0.27 -5.57 3.89 -365.89 -1.42 -7.00 16 3 N -0.48 -3.91 7.23 -57.59 -0.42 -4.33 16 4 H 0.45 -0.26 8.96 -213.33 -1.91 -2.18 16 5 C 0.16 0.92 11.99 83.54 1.00 1.92 16 6 C -0.25 -4.09 10.74 21.99 0.24 -3.85 16 7 C -0.23 -6.20 7.13 85.24 0.61 -5.59 16 8 S 1.87 83.66 5.23 -56.49 -0.30 83.36 16 9 O -0.92 -41.34 13.54 -126.85 -1.72 -43.06 16 10 O -1.05 -60.80 16.06 -126.85 -2.04 -62.84 16 11 N -1.07 -53.97 6.07 -190.79 -1.16 -55.12 16 12 C 0.26 16.74 6.07 85.63 0.52 17.26 16 13 C -0.54 -33.94 9.27 25.60 0.24 -33.71 16 14 H 0.07 4.33 7.65 -2.91 -0.02 4.31 16 15 C -0.01 -0.92 5.46 84.66 0.46 -0.46 16 16 N -0.95 -64.53 13.29 21.45 0.28 -64.25 16 17 Si 0.98 47.19 29.54 68.60 2.03 49.21 16 18 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.09 3.00 6.02 -2.39 -0.01 2.98 16 24 H 0.26 -1.84 8.06 -2.91 -0.02 -1.86 16 25 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 26 H 0.43 13.96 9.03 -87.93 -0.79 13.17 16 27 H 0.37 16.36 8.54 -96.74 -0.83 15.54 16 28 H -0.07 -4.90 8.14 -2.39 -0.02 -4.92 16 29 H -0.03 -2.37 8.14 -2.39 -0.02 -2.39 16 30 H 0.26 16.66 8.31 -92.71 -0.77 15.89 16 Total: -1.00 -112.30 275.10 -2.60 -114.90 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -2.34 Total: 10.97 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 4.48 Total: -21.87 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -2.71 Total: -130.69 kcal Atomic # 8 Polarization: -102.14 SS G_CDS: -3.75 Total: -105.89 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 16 Polarization: 83.66 SS G_CDS: -0.30 Total: 83.36 kcal Total: -112.30 -2.60 -114.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.091 kcal (2) G-P(sol) polarization free energy of solvation -112.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds