Wall clock time and date at job start Mon Mar 30 2020 03:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40084 * 125.89927 * 2 1 4 4 H 0.97005 * 126.03644 * 359.97438 * 3 2 1 5 5 C 1.34952 * 107.92895 * 179.97438 * 3 2 1 6 6 C 1.35324 * 107.74195 * 359.74602 * 5 3 2 7 7 C 1.30843 * 125.89832 * 179.97438 * 2 1 3 8 8 C 1.50701 * 125.89420 * 359.97438 * 7 2 1 9 9 N 1.46493 * 109.47227 * 274.99917 * 8 7 2 10 10 S 1.65608 * 119.99916 * 165.00221 * 9 8 7 11 11 O 1.52197 * 109.46773 * 59.72492 * 10 9 8 12 12 O 1.42098 * 109.46822 * 299.72880 * 10 9 8 13 13 C 1.76192 * 109.47161 * 179.72581 * 10 9 8 14 14 H 1.08002 * 120.00322 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99919 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99820 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99919 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47321 * 60.00403 * 17 15 13 19 19 H 1.48506 * 109.46868 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47327 * 300.00316 * 17 15 13 21 21 H 1.08999 * 109.46789 * 270.00521 * 1 2 3 22 22 H 1.08999 * 109.46435 * 30.00507 * 1 2 3 23 23 H 1.08998 * 109.47016 * 150.00159 * 1 2 3 24 24 H 1.07998 * 126.12742 * 179.97438 * 5 3 2 25 25 H 1.07992 * 126.03934 * 180.27787 * 6 5 3 26 26 H 1.09002 * 109.46455 * 154.99953 * 8 7 2 27 27 H 1.08994 * 109.47077 * 35.00635 * 8 7 2 28 28 H 0.97000 * 120.00740 * 344.72883 * 9 8 7 29 29 H 0.96702 * 114.00081 * 60.00769 * 11 10 9 30 30 H 0.97005 * 119.99644 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2864 1.1348 0.0000 4 1 1.9856 2.0570 -0.0004 5 6 3.5701 0.7184 0.0006 6 6 3.5647 -0.6348 0.0066 7 6 2.2322 -1.0599 0.0005 8 6 1.7613 -2.4915 0.0017 9 7 1.4949 -2.9168 1.3779 10 16 0.6230 -4.2953 1.6645 11 8 1.3352 -5.4854 1.0377 12 8 -0.6718 -4.1639 1.0941 13 6 0.4766 -4.5470 3.4022 14 1 0.9262 -3.8454 4.0893 15 6 -0.2128 -5.6391 3.8849 16 7 -0.7607 -6.4932 3.0483 17 14 -0.3687 -5.9056 5.7273 18 1 -1.0634 -4.7441 6.3384 19 1 -1.1504 -7.1418 5.9842 20 1 0.9843 -6.0431 6.3238 21 1 -0.3633 0.0001 1.0277 22 1 -0.3632 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 4.4449 1.3517 0.0003 25 1 4.4354 -1.2736 0.0129 26 1 2.5325 -3.1278 -0.4325 27 1 0.8480 -2.5740 -0.5875 28 1 1.8325 -2.3932 2.1214 29 1 2.2269 -5.6354 1.3805 30 1 -1.2454 -7.2617 3.3879 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659276.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:58 Heat of formation + Delta-G solvation = 64.239875 kcal Electronic energy + Delta-G solvation = -16321.563532 eV Core-core repulsion = 13477.021165 eV Total energy + Delta-G solvation = -2844.542367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.35102 -35.96068 -33.90918 -33.86908 -33.05346 -32.20487 -29.77145 -26.25157 -26.07947 -24.67712 -20.68199 -19.39044 -18.90684 -18.17674 -17.65402 -16.52907 -15.34294 -14.70397 -14.50792 -14.23575 -13.85693 -13.67021 -13.31695 -12.65976 -12.31342 -12.24137 -12.05386 -11.89576 -11.63686 -11.39877 -11.24490 -10.83376 -10.72462 -10.50888 -9.81103 -9.30252 -8.88899 -8.62439 -7.95855 -7.74978 -6.74531 -5.28685 -2.89351 1.09572 2.83433 3.02372 3.09325 3.13014 3.50069 3.96685 4.35038 4.71018 4.92504 5.36197 5.51381 5.68969 5.79474 6.06205 6.10168 6.17997 6.43225 6.56637 6.61831 6.86514 7.08461 7.16900 7.29773 7.78158 8.13736 8.21045 8.63291 8.66689 8.75408 8.89449 10.20795 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.037415 B = 0.006258 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.174162 B = 4473.312226 C = 4596.577554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.374 5.374 3 N -0.530 5.530 4 H 0.418 0.582 5 C -0.008 4.008 6 C -0.179 4.179 7 C -0.050 4.050 8 C 0.188 3.812 9 N -1.063 6.063 10 S 2.213 3.787 11 O -0.888 6.888 12 O -0.977 6.977 13 C -0.977 4.977 14 H 0.099 0.901 15 C 0.123 3.877 16 N -0.844 5.844 17 Si 0.902 3.098 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.045 0.955 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.158 0.842 25 H 0.127 0.873 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.359 0.641 29 H 0.422 0.578 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 10.343 -3.272 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.185 5.185 3 N -0.256 5.256 4 H 0.259 0.741 5 C -0.142 4.142 6 C -0.207 4.207 7 C -0.192 4.192 8 C 0.067 3.933 9 N -0.818 5.818 10 S 2.353 3.647 11 O -0.736 6.736 12 O -0.965 6.965 13 C -1.109 5.109 14 H 0.117 0.883 15 C -0.094 4.094 16 N -0.475 5.475 17 Si 0.726 3.274 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.175 0.825 25 H 0.145 0.855 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.192 0.808 29 H 0.281 0.719 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.315 8.789 -4.073 11.564 hybrid contribution -0.113 0.329 2.474 2.498 sum 6.202 9.118 -1.599 11.143 Atomic orbital electron populations 1.21497 0.76101 1.02767 1.01741 1.43485 1.01250 0.96747 1.76982 1.43102 1.00917 1.00606 1.81004 0.74083 1.21049 0.85738 0.95592 1.11867 1.20386 0.95606 0.93471 1.11230 1.19659 0.89496 0.87983 1.22103 1.19982 0.97149 0.87036 0.89178 1.64223 1.72368 1.36469 1.08704 1.35140 0.80176 0.73042 0.76388 1.85606 1.38734 1.72723 1.76551 1.92962 1.42769 1.82453 1.78333 1.30615 1.44552 1.17089 1.18671 0.88310 1.25044 0.90525 0.93569 1.00223 1.69996 1.28919 1.12190 1.36374 0.86459 0.79166 0.78321 0.83460 1.19032 1.20378 1.18941 0.93692 0.92381 0.89522 0.82482 0.85467 0.93421 0.93756 0.80847 0.71895 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.78 11.20 59.85 0.67 2.45 16 2 N -0.37 -6.01 3.89 -63.61 -0.25 -6.26 16 3 N -0.53 -7.01 7.23 30.45 0.22 -6.79 16 4 H 0.42 4.13 8.96 -182.60 -1.64 2.50 16 5 C -0.01 -0.10 11.99 -17.22 -0.21 -0.31 16 6 C -0.18 -2.72 10.74 -40.01 -0.43 -3.15 16 7 C -0.05 -0.86 6.35 -82.40 -0.52 -1.39 16 8 C 0.19 3.54 6.43 -5.20 -0.03 3.50 16 9 N -1.06 -21.43 6.06 -11.66 -0.07 -21.50 16 10 S 2.21 55.37 4.69 -107.50 -0.50 54.86 16 11 O -0.89 -20.79 13.56 -58.38 -0.79 -21.58 16 12 O -0.98 -30.31 18.10 -58.38 -1.06 -31.37 16 13 C -0.98 -25.95 9.99 30.60 0.31 -25.65 16 14 H 0.10 2.44 7.81 -52.49 -0.41 2.03 16 15 C 0.12 3.37 5.46 -17.82 -0.10 3.27 16 16 N -0.84 -24.61 13.16 55.43 0.73 -23.88 16 17 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.09 1.37 6.99 -51.93 -0.36 1.01 16 24 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 25 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.90 7.10 -51.93 -0.37 0.53 16 28 H 0.36 6.85 8.65 -34.47 -0.30 6.55 16 29 H 0.42 7.28 9.03 67.38 0.61 7.89 16 30 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 277.11 15.07 4.18 4.18 Total: -1.00 -37.15 277.11 -6.60 -43.75 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -3.72 Total: 14.58 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -0.31 Total: -21.27 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.63 Total: -58.43 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.85 Total: -52.95 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 55.37 SS G_CDS: -0.50 Total: 54.86 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -37.15 -6.60 -43.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659276.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.990 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds