Wall clock time and date at job start Mon Mar 30 2020 03:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 125.89721 * 2 1 4 4 H 0.97004 * 126.04140 * 359.97438 * 3 2 1 5 5 C 1.34951 * 107.92494 * 179.97438 * 3 2 1 6 6 C 1.35315 * 107.74532 * 359.75143 * 5 3 2 7 7 C 1.30839 * 125.89809 * 179.97438 * 2 1 3 8 8 C 1.50701 * 125.89638 * 359.97438 * 7 2 1 9 9 N 1.46500 * 109.46880 * 274.99970 * 8 7 2 10 10 S 1.65600 * 120.00029 * 165.00279 * 9 8 7 11 11 O 1.52206 * 109.47131 * 299.99938 * 10 9 8 12 12 O 1.42096 * 109.47265 * 59.99551 * 10 9 8 13 13 C 1.76202 * 109.47326 * 179.97438 * 10 9 8 14 14 H 1.07993 * 120.00041 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99704 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00127 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99520 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47561 * 120.00352 * 17 15 13 20 20 H 1.48506 * 109.46890 * 240.00185 * 17 15 13 21 21 H 1.09000 * 109.47466 * 270.00460 * 1 2 3 22 22 H 1.09006 * 109.46692 * 30.00442 * 1 2 3 23 23 H 1.08997 * 109.46962 * 149.99964 * 1 2 3 24 24 H 1.08005 * 126.12908 * 179.97438 * 5 3 2 25 25 H 1.08003 * 126.04016 * 180.27556 * 6 5 3 26 26 H 1.08997 * 109.47055 * 155.00137 * 8 7 2 27 27 H 1.08995 * 109.47244 * 35.00024 * 8 7 2 28 28 H 0.97006 * 120.00388 * 344.99818 * 9 8 7 29 29 H 0.96705 * 113.99648 * 299.99854 * 11 10 9 30 30 H 0.97000 * 119.99463 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2864 1.1348 0.0000 4 1 1.9856 2.0570 -0.0004 5 6 3.5700 0.7184 0.0006 6 6 3.5647 -0.6348 0.0065 7 6 2.2322 -1.0599 0.0005 8 6 1.7613 -2.4914 0.0017 9 7 1.4949 -2.9167 1.3780 10 16 0.6232 -4.2952 1.6647 11 8 -0.7615 -4.1573 1.0480 12 8 1.2912 -5.4073 1.0850 13 6 0.4707 -4.5429 3.4026 14 1 0.9172 -3.8394 4.0895 15 6 -0.2197 -5.6345 3.8853 16 7 -0.7638 -6.4910 3.0487 17 14 -0.3819 -5.8968 5.7276 18 1 0.3137 -4.7996 6.4470 19 1 -1.8188 -5.9008 6.1025 20 1 0.2299 -7.1982 6.0981 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 4.4449 1.3517 0.0003 25 1 4.4354 -1.2736 0.0127 26 1 2.5324 -3.1279 -0.4324 27 1 0.8480 -2.5740 -0.5874 28 1 1.8292 -2.3909 2.1215 29 1 -1.2757 -3.4166 1.3975 30 1 -1.2492 -7.2591 3.3884 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659278.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:00 Heat of formation + Delta-G solvation = 64.778049 kcal Electronic energy + Delta-G solvation = -16338.103011 eV Core-core repulsion = 13493.583981 eV Total energy + Delta-G solvation = -2844.519030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.35263 -36.03376 -33.95967 -33.88125 -33.08903 -32.25704 -29.77362 -26.31653 -26.12087 -24.69615 -20.67686 -19.40761 -18.97789 -18.21629 -17.69311 -16.56377 -15.38345 -14.74228 -14.47807 -14.38431 -13.86731 -13.69038 -13.37217 -12.63859 -12.33860 -12.30265 -12.12563 -11.92531 -11.68533 -11.36205 -11.30101 -10.89377 -10.78178 -10.53304 -9.79095 -9.35057 -8.90632 -8.64874 -7.94907 -7.78262 -6.77843 -5.32288 -2.93703 1.06714 2.80465 2.97710 3.08746 3.14441 3.51042 3.94200 4.31406 4.67456 4.88745 5.32997 5.40609 5.62398 5.71223 5.85391 6.06067 6.18723 6.35169 6.58664 6.68914 6.89299 7.09415 7.13899 7.26162 7.74413 8.13027 8.18901 8.61458 8.64335 8.74418 8.86437 10.17506 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.037626 B = 0.006261 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.988148 B = 4471.062260 C = 4585.564925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.375 5.375 3 N -0.531 5.531 4 H 0.418 0.582 5 C -0.012 4.012 6 C -0.175 4.175 7 C -0.056 4.056 8 C 0.191 3.809 9 N -1.065 6.065 10 S 2.219 3.781 11 O -0.885 6.885 12 O -0.975 6.975 13 C -0.976 4.976 14 H 0.101 0.899 15 C 0.122 3.878 16 N -0.843 5.843 17 Si 0.903 3.097 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.272 1.272 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.157 0.843 25 H 0.127 0.873 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.361 0.639 29 H 0.420 0.580 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 14.731 -3.042 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.185 5.185 3 N -0.258 5.258 4 H 0.259 0.741 5 C -0.146 4.146 6 C -0.203 4.203 7 C -0.198 4.198 8 C 0.070 3.930 9 N -0.820 5.820 10 S 2.359 3.641 11 O -0.734 6.734 12 O -0.963 6.963 13 C -1.108 5.108 14 H 0.119 0.881 15 C -0.094 4.094 16 N -0.474 5.474 17 Si 0.727 3.273 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.197 1.197 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.175 0.825 25 H 0.145 0.855 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.193 0.807 29 H 0.280 0.720 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.215 12.565 -3.848 13.143 hybrid contribution -0.251 0.408 2.424 2.471 sum -0.466 12.973 -1.424 13.059 Atomic orbital electron populations 1.21460 0.76561 1.02683 1.01421 1.43384 1.01042 0.96802 1.77311 1.43038 1.00874 1.00446 1.81443 0.74127 1.21009 0.85703 0.95519 1.12374 1.20408 0.95763 0.93493 1.10628 1.19555 0.89566 0.87778 1.22904 1.19846 0.97157 0.87107 0.88866 1.63973 1.68855 1.40388 1.08832 1.34385 0.72013 0.81215 0.76520 1.85646 1.52391 1.58902 1.76432 1.92989 1.68205 1.57139 1.78011 1.30632 1.44873 1.16817 1.18492 0.88096 1.25052 0.91078 0.92953 1.00362 1.70007 1.29240 1.11856 1.36284 0.86373 0.78507 0.79221 0.83203 1.18604 1.19842 1.19732 0.93907 0.92362 0.89889 0.82544 0.85548 0.93051 0.94307 0.80660 0.72044 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 70. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.42 11.20 59.85 0.67 2.09 16 2 N -0.37 -5.49 3.89 -63.61 -0.25 -5.74 16 3 N -0.53 -6.69 7.23 30.45 0.22 -6.47 16 4 H 0.42 3.83 8.96 -182.61 -1.64 2.19 16 5 C -0.01 -0.15 11.99 -17.22 -0.21 -0.36 16 6 C -0.18 -2.77 10.74 -40.01 -0.43 -3.20 16 7 C -0.06 -0.95 6.35 -82.41 -0.52 -1.47 16 8 C 0.19 3.62 6.43 -5.19 -0.03 3.59 16 9 N -1.07 -21.50 6.07 -11.66 -0.07 -21.57 16 10 S 2.22 55.36 4.69 -107.50 -0.50 54.85 16 11 O -0.89 -20.27 13.56 -58.38 -0.79 -21.06 16 12 O -0.98 -30.68 18.10 -58.38 -1.06 -31.74 16 13 C -0.98 -25.78 9.99 30.60 0.31 -25.47 16 14 H 0.10 2.49 7.81 -52.49 -0.41 2.08 16 15 C 0.12 3.33 5.46 -17.82 -0.10 3.23 16 16 N -0.84 -24.43 13.16 55.43 0.73 -23.70 16 17 Si 0.90 20.17 29.54 -169.99 -5.02 15.14 16 18 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.96 6.99 -51.93 -0.36 0.60 16 24 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 25 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.71 7.10 -51.93 -0.37 0.34 16 28 H 0.36 6.89 8.65 -34.47 -0.30 6.59 16 29 H 0.42 6.98 9.03 67.38 0.61 7.58 16 30 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 277.11 15.07 4.18 4.18 Total: -1.00 -37.54 277.11 -6.60 -44.13 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -3.72 Total: 13.57 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -0.31 Total: -21.60 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.63 Total: -57.48 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -1.85 Total: -52.80 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 55.36 SS G_CDS: -0.50 Total: 54.85 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -37.54 -6.60 -44.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659278.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.912 kcal (2) G-P(sol) polarization free energy of solvation -37.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds