Wall clock time and date at job start Mon Mar 30 2020 03:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 125.89721 * 2 1 4 4 H 0.97004 * 126.04140 * 359.97438 * 3 2 1 5 5 C 1.34951 * 107.92494 * 179.97438 * 3 2 1 6 6 C 1.35315 * 107.74532 * 359.75143 * 5 3 2 7 7 C 1.30839 * 125.89809 * 179.97438 * 2 1 3 8 8 C 1.50701 * 125.89638 * 359.97438 * 7 2 1 9 9 N 1.46500 * 109.46880 * 274.99970 * 8 7 2 10 10 S 1.65600 * 120.00029 * 165.00279 * 9 8 7 11 11 O 1.52206 * 109.47131 * 299.99938 * 10 9 8 12 12 O 1.42096 * 109.47265 * 59.99551 * 10 9 8 13 13 C 1.76202 * 109.47326 * 179.97438 * 10 9 8 14 14 H 1.07993 * 120.00041 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99704 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00127 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99520 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47561 * 120.00352 * 17 15 13 20 20 H 1.48506 * 109.46890 * 240.00185 * 17 15 13 21 21 H 1.09000 * 109.47466 * 270.00460 * 1 2 3 22 22 H 1.09006 * 109.46692 * 30.00442 * 1 2 3 23 23 H 1.08997 * 109.46962 * 149.99964 * 1 2 3 24 24 H 1.08005 * 126.12908 * 179.97438 * 5 3 2 25 25 H 1.08003 * 126.04016 * 180.27556 * 6 5 3 26 26 H 1.08997 * 109.47055 * 155.00137 * 8 7 2 27 27 H 1.08995 * 109.47244 * 35.00024 * 8 7 2 28 28 H 0.97006 * 120.00388 * 344.99818 * 9 8 7 29 29 H 0.96705 * 113.99648 * 299.99854 * 11 10 9 30 30 H 0.97000 * 119.99463 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2864 1.1348 0.0000 4 1 1.9856 2.0570 -0.0004 5 6 3.5700 0.7184 0.0006 6 6 3.5647 -0.6348 0.0065 7 6 2.2322 -1.0599 0.0005 8 6 1.7613 -2.4914 0.0017 9 7 1.4949 -2.9167 1.3780 10 16 0.6232 -4.2952 1.6647 11 8 -0.7615 -4.1573 1.0480 12 8 1.2912 -5.4073 1.0850 13 6 0.4707 -4.5429 3.4026 14 1 0.9172 -3.8394 4.0895 15 6 -0.2197 -5.6345 3.8853 16 7 -0.7638 -6.4910 3.0487 17 14 -0.3819 -5.8968 5.7276 18 1 0.3137 -4.7996 6.4470 19 1 -1.8188 -5.9008 6.1025 20 1 0.2299 -7.1982 6.0981 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 4.4449 1.3517 0.0003 25 1 4.4354 -1.2736 0.0127 26 1 2.5324 -3.1279 -0.4324 27 1 0.8480 -2.5740 -0.5874 28 1 1.8292 -2.3909 2.1215 29 1 -1.2757 -3.4166 1.3975 30 1 -1.2492 -7.2591 3.3884 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659278.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:00 Heat of formation + Delta-G solvation = 25.063891 kcal Electronic energy + Delta-G solvation = -16339.825146 eV Core-core repulsion = 13493.583981 eV Total energy + Delta-G solvation = -2846.241165 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.71583 -36.55366 -35.45184 -35.04253 -34.61418 -33.94367 -31.49978 -27.94465 -27.56114 -26.13305 -22.52539 -21.15798 -19.67607 -19.59074 -19.36358 -17.62387 -16.89579 -16.53214 -16.02802 -15.61399 -15.36498 -15.15070 -14.63780 -14.12171 -13.97496 -13.75795 -13.61156 -13.18992 -13.05931 -12.98004 -12.79668 -12.29952 -12.25856 -11.82925 -11.07923 -10.97812 -10.58129 -10.07630 -9.74077 -8.64490 -8.30656 -6.74786 -4.52078 -0.02832 0.79738 1.23917 1.27810 1.41966 1.75990 2.33907 2.90888 3.11640 3.49549 4.01574 4.12682 4.32131 4.34120 4.51860 4.62665 4.84890 4.98862 5.06588 5.18036 5.27081 5.34440 5.57572 5.94260 6.21587 6.34975 6.43742 6.77520 7.15061 7.41784 7.73182 8.67472 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.037626 B = 0.006261 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.988148 B = 4471.062260 C = 4585.564925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.329 5.329 3 N -0.461 5.461 4 H 0.464 0.536 5 C 0.159 3.841 6 C -0.271 4.271 7 C 0.121 3.879 8 C 0.162 3.838 9 N -1.060 6.060 10 S 2.013 3.987 11 O -0.930 6.930 12 O -1.102 7.102 13 C -0.979 4.979 14 H 0.076 0.924 15 C 0.051 3.949 16 N -0.920 5.920 17 Si 0.935 3.065 18 H -0.254 1.254 19 H -0.261 1.261 20 H -0.282 1.282 21 H 0.082 0.918 22 H 0.124 0.876 23 H 0.095 0.905 24 H 0.253 0.747 25 H 0.158 0.842 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.334 0.666 29 H 0.409 0.591 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 30.143 -7.953 31.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.122 5.122 3 N -0.181 5.181 4 H 0.314 0.686 5 C 0.014 3.986 6 C -0.301 4.301 7 C -0.033 4.033 8 C 0.033 3.967 9 N -0.808 5.808 10 S 2.136 3.864 11 O -0.778 6.778 12 O -1.091 7.091 13 C -1.105 5.105 14 H 0.095 0.905 15 C -0.153 4.153 16 N -0.558 5.558 17 Si 0.757 3.243 18 H -0.178 1.178 19 H -0.186 1.186 20 H -0.208 1.208 21 H 0.101 0.899 22 H 0.142 0.858 23 H 0.114 0.886 24 H 0.269 0.731 25 H 0.175 0.825 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.162 0.838 29 H 0.267 0.733 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.095 28.370 -8.718 30.113 hybrid contribution -0.159 -0.802 2.187 2.334 sum 4.935 27.568 -6.532 28.758 Atomic orbital electron populations 1.22508 0.71539 1.06729 1.05237 1.45354 1.05122 0.97975 1.63703 1.44530 1.01559 1.02559 1.69496 0.68584 1.23130 0.87036 0.95344 0.93066 1.21253 0.95770 0.96082 1.16968 1.21677 0.92052 0.89214 1.00310 1.20365 0.96945 0.85471 0.93914 1.66135 1.70306 1.40291 1.04056 1.60397 0.70872 0.81286 0.73798 1.85593 1.56534 1.58455 1.77190 1.92439 1.72386 1.64677 1.79607 1.32113 1.38698 1.13336 1.26321 0.90547 1.26085 0.92398 0.93798 1.03045 1.70273 1.34550 1.13647 1.37322 0.85879 0.78841 0.78374 0.81249 1.17780 1.18577 1.20822 0.89942 0.85771 0.88648 0.73134 0.82480 0.95698 0.93923 0.83832 0.73270 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.20 127.77 1.43 2.26 16 2 N -0.33 -4.49 3.89 -355.15 -1.38 -5.87 16 3 N -0.46 -1.68 7.23 -57.59 -0.42 -2.10 16 4 H 0.46 -2.32 8.96 -213.33 -1.91 -4.23 16 5 C 0.16 0.60 11.99 83.54 1.00 1.60 16 6 C -0.27 -4.24 10.74 21.99 0.24 -4.00 16 7 C 0.12 2.74 6.35 43.10 0.27 3.02 16 8 C 0.16 5.98 6.43 85.63 0.55 6.53 16 9 N -1.06 -48.57 6.07 -190.80 -1.16 -49.73 16 10 S 2.01 127.43 4.69 -56.49 -0.27 127.17 16 11 O -0.93 -55.57 13.56 -126.85 -1.72 -57.29 16 12 O -1.10 -87.42 18.10 -126.85 -2.30 -89.72 16 13 C -0.98 -65.41 9.99 67.74 0.68 -64.74 16 14 H 0.08 4.76 7.81 -2.91 -0.02 4.74 16 15 C 0.05 3.44 5.46 84.66 0.46 3.90 16 16 N -0.92 -67.33 13.16 21.45 0.28 -67.05 16 17 Si 0.93 49.87 29.54 68.60 2.03 51.90 16 18 H -0.25 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.26 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.28 -14.94 7.11 99.48 0.71 -14.23 16 21 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 23 H 0.10 1.39 6.99 -2.39 -0.02 1.38 16 24 H 0.25 -1.90 8.06 -2.91 -0.02 -1.93 16 25 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 1.58 7.10 -2.39 -0.02 1.56 16 28 H 0.33 14.02 8.65 -96.74 -0.84 13.18 16 29 H 0.41 19.07 9.03 -87.92 -0.79 18.28 16 30 H 0.27 18.23 8.31 -92.71 -0.77 17.46 16 Total: -1.00 -124.84 277.11 -2.65 -127.49 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -2.35 Total: 16.63 kcal Atomic # 6 Polarization: -56.06 SS G_CDS: 4.63 Total: -51.43 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -2.67 Total: -124.75 kcal Atomic # 8 Polarization: -142.99 SS G_CDS: -4.02 Total: -147.01 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.03 Total: 51.90 kcal Atomic # 16 Polarization: 127.43 SS G_CDS: -0.27 Total: 127.17 kcal Total: -124.84 -2.65 -127.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659278.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.551 kcal (2) G-P(sol) polarization free energy of solvation -124.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -127.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds