Wall clock time and date at job start Mon Mar 30 2020 03:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.29261 * 126.84446 * 2 1 4 4 C 1.50705 * 123.50800 * 359.97438 * 3 2 1 5 5 N 1.46497 * 109.46937 * 185.01657 * 4 3 2 6 6 S 1.65602 * 119.99695 * 164.37277 * 5 4 3 7 7 O 1.52196 * 109.47384 * 299.99995 * 6 5 4 8 8 O 1.42101 * 109.47031 * 60.00137 * 6 5 4 9 9 C 1.76197 * 109.47094 * 179.97438 * 6 5 4 10 10 H 1.08010 * 120.00147 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00140 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99977 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99971 * 180.02562 * 11 9 6 14 14 H 1.48505 * 109.47459 * 59.99766 * 13 11 9 15 15 H 1.48499 * 109.47398 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47196 * 299.99853 * 13 11 9 17 17 N 1.35026 * 112.98128 * 180.02562 * 3 2 1 18 18 C 1.29515 * 112.14502 * 0.02562 * 17 3 2 19 19 C 1.47395 * 126.83548 * 179.69111 * 2 1 3 20 20 H 1.09005 * 109.47056 * 84.90677 * 1 2 3 21 21 H 1.08995 * 109.46939 * 204.90846 * 1 2 3 22 22 H 1.09003 * 109.46904 * 324.90994 * 1 2 3 23 23 H 1.09000 * 109.46652 * 305.01860 * 4 3 2 24 24 H 1.08998 * 109.47310 * 65.01104 * 4 3 2 25 25 H 0.96996 * 120.00036 * 344.37577 * 5 4 3 26 26 H 0.96700 * 113.99891 * 300.00014 * 7 6 5 27 27 H 0.97004 * 119.99779 * 180.02562 * 12 11 9 28 28 H 1.07996 * 127.30235 * 180.02562 * 18 17 3 29 29 H 1.09000 * 110.67518 * 298.41691 * 19 2 1 30 30 H 1.08991 * 110.67857 * 61.57799 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2401 1.0344 0.0000 4 6 1.7334 2.4537 -0.0006 5 7 2.8651 3.3762 -0.1212 6 16 2.6032 4.9583 -0.5346 7 8 1.9302 5.0217 -1.8982 8 8 1.7645 5.5689 0.4365 9 6 4.1437 5.8111 -0.5990 10 1 5.0619 5.2847 -0.3836 11 6 4.1770 7.1505 -0.9244 12 7 3.0591 7.7914 -1.1872 13 14 5.8102 8.0545 -0.9934 14 1 6.6866 7.4168 -2.0086 15 1 5.5755 9.4733 -1.3640 16 1 6.4672 7.9921 0.3369 17 7 3.5510 0.7109 -0.0006 18 6 3.7376 -0.5707 -0.0015 19 6 2.3487 -1.1797 0.0064 20 1 -0.3633 0.0912 -1.0237 21 1 -0.3633 -0.9320 0.4328 22 1 -0.3633 0.8409 0.5908 23 1 1.0562 2.5973 -0.8425 24 1 1.2021 2.6502 0.9306 25 1 3.7677 3.0603 0.0410 26 1 2.4475 4.6224 -2.6110 27 1 3.0826 8.7337 -1.4165 28 1 4.6820 -1.0947 -0.0017 29 1 2.1910 -1.7738 0.9065 30 1 2.1910 -1.7835 -0.8872 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:27 Heat of formation + Delta-G solvation = 26.012536 kcal Electronic energy + Delta-G solvation = -16208.940852 eV Core-core repulsion = 13362.740823 eV Total energy + Delta-G solvation = -2846.200029 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.54035 -38.24360 -36.07097 -34.84646 -34.28442 -31.79361 -28.01051 -27.45837 -25.65269 -24.08731 -21.15443 -19.96532 -19.79549 -18.21056 -17.58025 -16.74977 -16.23556 -15.47880 -14.97782 -14.50047 -14.37289 -13.76875 -13.42916 -13.09116 -12.90328 -12.60106 -12.46117 -12.02820 -11.84355 -11.77843 -11.46460 -11.38519 -11.00663 -10.67505 -10.34069 -10.31412 -9.67508 -9.08431 -8.02849 -7.55104 -7.51934 -6.90105 -3.35419 -0.15180 2.28304 2.46827 2.55103 2.61895 3.12691 3.42191 3.63202 4.30624 4.97284 5.01379 5.43603 5.82284 5.98064 6.02946 6.13436 6.22719 6.33624 6.45392 6.54663 6.70086 6.83607 7.15243 7.33917 7.39398 7.41680 7.47170 8.67600 8.90336 9.22584 10.02224 10.68231 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.041241 B = 0.006180 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.776818 B = 4529.867719 C = 5002.522484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.621 5.621 3 C -0.110 4.110 4 C 0.253 3.747 5 N -1.064 6.064 6 S 2.529 3.471 7 O -0.844 6.844 8 O -0.893 6.893 9 C -0.925 4.925 10 H 0.150 0.850 11 C 0.112 3.888 12 N -0.803 5.803 13 Si 0.961 3.039 14 H -0.251 1.251 15 H -0.266 1.266 16 H -0.250 1.250 17 N -0.416 5.416 18 C -0.374 4.374 19 C 0.193 3.807 20 H 0.015 0.985 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.437 0.563 26 H 0.456 0.544 27 H 0.316 0.684 28 H 0.124 0.876 29 H -0.016 1.016 30 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 6.771 -4.174 7.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.348 5.348 3 C -0.345 4.345 4 C 0.127 3.873 5 N -0.832 5.832 6 S 2.643 3.357 7 O -0.701 6.701 8 O -0.881 6.881 9 C -1.066 5.066 10 H 0.168 0.832 11 C -0.114 4.114 12 N -0.430 5.430 13 Si 0.780 3.220 14 H -0.175 1.175 15 H -0.190 1.190 16 H -0.174 1.174 17 N -0.132 5.132 18 C -0.533 4.533 19 C 0.068 3.932 20 H 0.033 0.967 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.277 0.723 26 H 0.323 0.677 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.002 0.998 30 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -0.313 8.177 -3.955 9.089 hybrid contribution 0.755 -0.824 -0.384 1.182 sum 0.442 7.353 -4.339 8.549 Atomic orbital electron populations 1.20771 0.81720 0.99881 0.98344 1.43676 1.01666 1.05519 1.83960 1.18921 0.86541 0.86627 1.42400 1.18896 0.84222 0.86238 0.97934 1.54406 1.19011 1.24629 1.85163 1.08925 0.78863 0.72419 0.75449 1.85874 1.64595 1.82971 1.36625 1.93498 1.67748 1.73107 1.53735 1.29642 1.10217 1.02748 1.63965 0.83230 1.25276 1.01716 0.95622 0.88813 1.69857 1.27678 1.14768 1.30652 0.85467 0.77360 0.77782 0.81352 1.17504 1.19011 1.17385 1.67747 1.15640 1.18455 1.11397 1.23280 0.92676 0.90088 1.47282 1.20420 0.92022 0.86743 0.94036 0.96657 0.93792 0.93961 0.94625 0.93817 0.72285 0.67694 0.87242 0.85895 0.99828 1.00037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 2.71 10.90 59.85 0.65 3.36 16 2 N -0.62 -15.45 3.29 -179.53 -0.59 -16.04 16 3 C -0.11 -2.79 7.56 -156.45 -1.18 -3.98 16 4 C 0.25 5.19 5.97 -5.19 -0.03 5.16 16 5 N -1.06 -18.47 6.04 -11.66 -0.07 -18.54 16 6 S 2.53 40.64 4.69 -107.50 -0.50 40.14 16 7 O -0.84 -11.43 13.56 -58.38 -0.79 -12.22 16 8 O -0.89 -18.76 18.10 -58.38 -1.06 -19.82 16 9 C -0.92 -14.76 9.99 30.60 0.31 -14.45 16 10 H 0.15 2.07 7.81 -52.48 -0.41 1.66 16 11 C 0.11 1.88 5.46 -17.82 -0.10 1.78 16 12 N -0.80 -14.73 13.16 55.43 0.73 -14.00 16 13 Si 0.96 12.96 29.54 -169.99 -5.02 7.94 16 14 H -0.25 -3.26 7.11 56.52 0.40 -2.85 16 15 H -0.27 -3.51 7.11 56.52 0.40 -3.11 16 16 H -0.25 -3.46 7.11 56.52 0.40 -3.06 16 17 N -0.42 -11.27 9.83 -7.44 -0.07 -11.34 16 18 C -0.37 -10.34 12.60 -12.78 -0.16 -10.50 16 19 C 0.19 5.04 7.68 -4.23 -0.03 5.01 16 20 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.76 7.74 -51.93 -0.40 0.35 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.44 7.68 7.74 -34.47 -0.27 7.41 16 26 H 0.46 3.38 9.03 67.38 0.61 3.99 16 27 H 0.32 5.17 8.31 -40.82 -0.34 4.83 16 28 H 0.12 3.23 8.06 -52.49 -0.42 2.80 16 29 H -0.02 -0.40 8.14 -51.93 -0.42 -0.82 16 30 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 LS Contribution 277.25 15.07 4.18 4.18 Total: -1.00 -35.75 277.25 -6.31 -42.06 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -2.56 Total: 11.26 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.55 Total: -13.61 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.00 Total: -59.93 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.85 Total: -32.04 kcal Atomic # 14 Polarization: 12.96 SS G_CDS: -5.02 Total: 7.94 kcal Atomic # 16 Polarization: 40.64 SS G_CDS: -0.50 Total: 40.14 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -35.75 -6.31 -42.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.071 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds