Wall clock time and date at job start Mon Mar 30 2020 03:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.29261 * 126.84446 * 2 1 4 4 C 1.50705 * 123.50800 * 359.97438 * 3 2 1 5 5 N 1.46497 * 109.46937 * 185.01657 * 4 3 2 6 6 S 1.65602 * 119.99695 * 164.37277 * 5 4 3 7 7 O 1.52196 * 109.47384 * 299.99995 * 6 5 4 8 8 O 1.42101 * 109.47031 * 60.00137 * 6 5 4 9 9 C 1.76197 * 109.47094 * 179.97438 * 6 5 4 10 10 H 1.08010 * 120.00147 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00140 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99977 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99971 * 180.02562 * 11 9 6 14 14 H 1.48505 * 109.47459 * 59.99766 * 13 11 9 15 15 H 1.48499 * 109.47398 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47196 * 299.99853 * 13 11 9 17 17 N 1.35026 * 112.98128 * 180.02562 * 3 2 1 18 18 C 1.29515 * 112.14502 * 0.02562 * 17 3 2 19 19 C 1.47395 * 126.83548 * 179.69111 * 2 1 3 20 20 H 1.09005 * 109.47056 * 84.90677 * 1 2 3 21 21 H 1.08995 * 109.46939 * 204.90846 * 1 2 3 22 22 H 1.09003 * 109.46904 * 324.90994 * 1 2 3 23 23 H 1.09000 * 109.46652 * 305.01860 * 4 3 2 24 24 H 1.08998 * 109.47310 * 65.01104 * 4 3 2 25 25 H 0.96996 * 120.00036 * 344.37577 * 5 4 3 26 26 H 0.96700 * 113.99891 * 300.00014 * 7 6 5 27 27 H 0.97004 * 119.99779 * 180.02562 * 12 11 9 28 28 H 1.07996 * 127.30235 * 180.02562 * 18 17 3 29 29 H 1.09000 * 110.67518 * 298.41691 * 19 2 1 30 30 H 1.08991 * 110.67857 * 61.57799 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2401 1.0344 0.0000 4 6 1.7334 2.4537 -0.0006 5 7 2.8651 3.3762 -0.1212 6 16 2.6032 4.9583 -0.5346 7 8 1.9302 5.0217 -1.8982 8 8 1.7645 5.5689 0.4365 9 6 4.1437 5.8111 -0.5990 10 1 5.0619 5.2847 -0.3836 11 6 4.1770 7.1505 -0.9244 12 7 3.0591 7.7914 -1.1872 13 14 5.8102 8.0545 -0.9934 14 1 6.6866 7.4168 -2.0086 15 1 5.5755 9.4733 -1.3640 16 1 6.4672 7.9921 0.3369 17 7 3.5510 0.7109 -0.0006 18 6 3.7376 -0.5707 -0.0015 19 6 2.3487 -1.1797 0.0064 20 1 -0.3633 0.0912 -1.0237 21 1 -0.3633 -0.9320 0.4328 22 1 -0.3633 0.8409 0.5908 23 1 1.0562 2.5973 -0.8425 24 1 1.2021 2.6502 0.9306 25 1 3.7677 3.0603 0.0410 26 1 2.4475 4.6224 -2.6110 27 1 3.0826 8.7337 -1.4165 28 1 4.6820 -1.0947 -0.0017 29 1 2.1910 -1.7738 0.9065 30 1 2.1910 -1.7835 -0.8872 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:26 Heat of formation + Delta-G solvation = -4.119802 kcal Electronic energy + Delta-G solvation = -16210.247488 eV Core-core repulsion = 13362.740823 eV Total energy + Delta-G solvation = -2847.506665 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46636 -39.45452 -37.57026 -36.29261 -35.63798 -33.63452 -29.69949 -28.87644 -27.37784 -25.83832 -22.42498 -21.69912 -21.27631 -19.71587 -19.29654 -18.01156 -17.54213 -16.97305 -16.39937 -16.24756 -15.92849 -15.24166 -14.76670 -14.69231 -14.37898 -13.97310 -13.78624 -13.53956 -13.36875 -13.26331 -13.16928 -12.88710 -12.53462 -12.23137 -11.72437 -11.53926 -11.47648 -10.71606 -9.55647 -9.44130 -9.28373 -8.20433 -5.38861 -1.45879 1.11790 1.38198 1.44878 1.59116 1.98764 2.21875 2.39536 2.96457 3.05716 3.21373 3.90213 4.42435 4.47099 4.61027 4.69359 4.78341 4.82082 4.83914 4.87472 5.13587 5.16399 5.39957 5.41257 5.52577 5.92378 6.21844 6.70406 7.21698 7.67372 8.14117 8.68339 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.041241 B = 0.006180 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.776818 B = 4529.867719 C = 5002.522484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.635 5.635 3 C -0.094 4.094 4 C 0.250 3.750 5 N -1.063 6.063 6 S 2.569 3.431 7 O -0.837 6.837 8 O -0.942 6.942 9 C -0.929 4.929 10 H 0.171 0.829 11 C 0.081 3.919 12 N -0.839 5.839 13 Si 1.011 2.989 14 H -0.239 1.239 15 H -0.264 1.264 16 H -0.256 1.256 17 N -0.439 5.439 18 C -0.449 4.449 19 C 0.195 3.805 20 H 0.037 0.963 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.438 0.562 26 H 0.481 0.519 27 H 0.321 0.679 28 H 0.116 0.884 29 H -0.025 1.025 30 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 8.347 -5.004 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.362 5.362 3 C -0.334 4.334 4 C 0.122 3.878 5 N -0.830 5.830 6 S 2.683 3.317 7 O -0.699 6.699 8 O -0.931 6.931 9 C -1.071 5.071 10 H 0.188 0.812 11 C -0.141 4.141 12 N -0.468 5.468 13 Si 0.827 3.173 14 H -0.162 1.162 15 H -0.188 1.188 16 H -0.180 1.180 17 N -0.157 5.157 18 C -0.602 4.602 19 C 0.069 3.931 20 H 0.055 0.945 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.278 0.722 26 H 0.353 0.647 27 H 0.133 0.867 28 H 0.134 0.866 29 H -0.008 1.008 30 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -0.727 9.648 -4.806 10.803 hybrid contribution 0.723 -1.139 -0.152 1.358 sum -0.004 8.508 -4.958 9.847 Atomic orbital electron populations 1.21106 0.78636 1.01694 1.00087 1.44120 1.03782 1.04849 1.83423 1.19928 0.86499 0.88883 1.38066 1.18921 0.85240 0.84171 0.99420 1.54138 1.18299 1.24726 1.85847 1.07478 0.78320 0.70976 0.74904 1.85833 1.64533 1.83029 1.36506 1.93442 1.69447 1.73773 1.56422 1.29871 1.10104 1.02899 1.64182 0.81164 1.26074 1.03878 0.96181 0.87996 1.69902 1.29122 1.15520 1.32233 0.84766 0.74265 0.77032 0.81190 1.16229 1.18783 1.17980 1.67724 1.16743 1.18206 1.13014 1.23303 0.93254 0.90914 1.52711 1.20293 0.91942 0.87335 0.93496 0.94492 0.92153 0.92041 0.91519 0.93505 0.72239 0.64678 0.86687 0.86604 1.00815 1.00466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 4.64 10.90 127.77 1.39 6.03 16 2 N -0.63 -30.70 3.29 -721.89 -2.37 -33.08 16 3 C -0.09 -4.65 7.56 138.49 1.05 -3.60 16 4 C 0.25 9.57 5.97 85.64 0.51 10.08 16 5 N -1.06 -34.55 6.04 -190.79 -1.15 -35.70 16 6 S 2.57 76.55 4.69 -56.49 -0.27 76.29 16 7 O -0.84 -20.05 13.56 -126.85 -1.72 -21.77 16 8 O -0.94 -38.12 18.10 -126.85 -2.30 -40.42 16 9 C -0.93 -27.37 9.99 67.73 0.68 -26.69 16 10 H 0.17 4.22 7.81 -2.91 -0.02 4.20 16 11 C 0.08 2.54 5.46 84.65 0.46 3.01 16 12 N -0.84 -29.44 13.16 21.45 0.28 -29.16 16 13 Si 1.01 24.19 29.54 68.60 2.03 26.21 16 14 H -0.24 -5.25 7.11 99.48 0.71 -4.54 16 15 H -0.26 -6.16 7.11 99.48 0.71 -5.45 16 16 H -0.26 -6.33 7.11 99.48 0.71 -5.62 16 17 N -0.44 -23.90 9.83 -177.44 -1.74 -25.64 16 18 C -0.45 -25.60 12.60 88.76 1.12 -24.48 16 19 C 0.19 10.34 7.68 85.77 0.66 11.00 16 20 H 0.04 1.20 8.14 -2.38 -0.02 1.19 16 21 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.06 1.98 7.74 -2.39 -0.02 1.97 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.44 14.66 7.74 -96.75 -0.75 13.91 16 26 H 0.48 5.38 9.03 -87.93 -0.79 4.58 16 27 H 0.32 10.10 8.31 -92.71 -0.77 9.33 16 28 H 0.12 6.45 8.06 -2.91 -0.02 6.43 16 29 H -0.03 -1.33 8.14 -2.39 -0.02 -1.35 16 30 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 Total: -1.00 -76.80 277.25 -1.75 -78.55 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.37 Total: 29.37 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 5.87 Total: -24.65 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -4.99 Total: -123.58 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -4.02 Total: -62.19 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: 2.03 Total: 26.21 kcal Atomic # 16 Polarization: 76.55 SS G_CDS: -0.27 Total: 76.29 kcal Total: -76.80 -1.75 -78.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.430 kcal (2) G-P(sol) polarization free energy of solvation -76.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds