Wall clock time and date at job start Mon Mar 30 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.29057 * 126.38431 * 115.02474 * 3 2 1 5 5 C 1.47152 * 109.78679 * 179.97438 * 4 3 2 6 6 S 1.76203 * 125.11086 * 180.02562 * 5 4 3 7 7 O 1.52196 * 109.46781 * 299.99683 * 6 5 4 8 8 O 1.42099 * 109.46908 * 59.99322 * 6 5 4 9 9 N 1.65597 * 109.47001 * 179.97438 * 6 5 4 10 10 C 1.36942 * 119.99573 * 180.02562 * 9 6 5 11 11 H 1.08002 * 119.99872 * 359.97438 * 10 9 6 12 12 C 1.38813 * 119.99970 * 180.02562 * 10 9 6 13 13 N 1.31614 * 119.99748 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99967 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47419 * 89.99832 * 14 12 10 16 16 H 1.48505 * 109.46736 * 209.99799 * 14 12 10 17 17 H 1.48504 * 109.47130 * 329.99204 * 14 12 10 18 18 N 1.29065 * 109.78575 * 359.97438 * 5 4 3 19 19 C 1.46851 * 126.38984 * 294.71559 * 3 2 1 20 20 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 22 22 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 24 24 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 25 25 H 1.08002 * 125.11073 * 359.96411 * 4 3 2 26 26 H 0.96698 * 114.00271 * 300.00125 * 7 6 5 27 27 H 0.96997 * 120.00338 * 359.97438 * 9 6 5 28 28 H 0.97000 * 119.99761 * 180.02562 * 13 12 10 29 29 H 1.09003 * 110.14583 * 299.16298 * 19 3 2 30 30 H 1.08997 * 110.15195 * 60.90130 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.6879 1.9565 0.9414 5 6 2.9909 3.3452 0.5603 6 16 3.8881 4.4948 1.5493 7 8 3.1612 4.7032 2.8702 8 8 5.1913 3.9873 1.8008 9 7 4.0038 5.9396 0.7484 10 6 4.6633 6.9916 1.3259 11 1 5.1075 6.8792 2.3038 12 6 4.7598 8.2029 0.6547 13 7 4.2179 8.3400 -0.5368 14 14 5.6600 9.6378 1.4422 15 1 7.0936 9.5940 1.0575 16 1 5.0610 10.9140 0.9755 17 1 5.5409 9.5462 2.9196 18 7 2.5017 3.5943 -0.6078 19 6 1.8428 2.3674 -1.0739 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3635 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.9816 1.4891 1.8697 26 1 2.2632 5.0488 2.7747 27 1 3.6050 6.0404 -0.1301 28 1 4.2857 9.1863 -1.0059 29 1 2.3128 2.0117 -1.9908 30 1 0.7822 2.5538 -1.2428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:40 Heat of formation + Delta-G solvation = 33.221890 kcal Electronic energy + Delta-G solvation = -16135.186789 eV Core-core repulsion = 13289.299381 eV Total energy + Delta-G solvation = -2845.887408 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -39.33424 -36.55583 -35.14020 -34.88582 -33.82455 -31.21827 -29.77466 -27.32655 -24.82907 -23.63374 -20.82454 -20.00618 -19.61685 -18.06225 -17.42309 -16.51554 -15.28634 -15.05494 -14.83087 -14.73584 -13.99445 -13.95726 -13.37653 -12.74346 -12.41765 -12.36362 -12.05199 -11.83513 -11.62015 -11.49226 -11.22112 -11.04262 -10.74080 -10.47273 -10.30022 -10.17462 -10.01259 -9.09449 -8.63014 -8.53587 -6.84884 -4.57159 -3.62417 0.46012 3.01735 3.06175 3.08768 3.18149 3.55245 3.83052 3.96838 4.16060 4.69351 4.97597 5.21970 5.30712 5.37928 5.64841 5.79342 5.88419 6.06632 6.12032 6.16864 6.37090 6.68509 7.01772 7.19796 7.35777 7.65202 8.36156 8.38887 8.47258 8.98272 9.10564 10.26840 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.047997 B = 0.005933 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.225259 B = 4717.957977 C = 5043.033003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.135 3.865 3 N -0.567 5.567 4 C -0.035 4.035 5 C -0.385 4.385 6 S 2.246 3.754 7 O -0.923 6.923 8 O -0.921 6.921 9 N -0.906 5.906 10 C -0.227 4.227 11 H 0.106 0.894 12 C 0.020 3.980 13 N -0.831 5.831 14 Si 0.933 3.067 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.265 1.265 18 N -0.585 5.585 19 C 0.268 3.732 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.432 0.568 27 H 0.420 0.580 28 H 0.284 0.716 29 H 0.034 0.966 30 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 -6.641 2.663 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 N -0.278 5.278 4 C -0.199 4.199 5 C -0.623 4.623 6 S 2.365 3.635 7 O -0.770 6.770 8 O -0.907 6.907 9 N -0.654 5.654 10 C -0.374 4.374 11 H 0.124 0.876 12 C -0.192 4.192 13 N -0.471 5.471 14 Si 0.757 3.243 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.189 1.189 18 N -0.334 5.334 19 C 0.051 3.949 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.156 0.844 26 H 0.294 0.706 27 H 0.257 0.743 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.276 -6.334 3.003 8.774 hybrid contribution -0.495 -0.182 -0.128 0.542 sum -5.770 -6.516 2.875 9.166 Atomic orbital electron populations 1.22141 0.96126 1.01660 1.02696 1.21138 0.94193 0.81559 1.01982 1.45082 1.51332 1.11176 1.20257 1.22773 1.06616 0.95254 0.95245 1.34854 1.22875 1.01510 1.03035 1.35145 0.82024 0.75355 0.70938 1.85686 1.38803 1.85478 1.67077 1.93244 1.36690 1.79073 1.81696 1.51985 1.59021 1.29857 1.24585 1.20015 1.20926 0.92108 1.04356 0.87598 1.25582 0.98597 0.98839 0.96179 1.69733 1.39236 1.27063 1.11064 0.85812 0.79598 0.79325 0.79534 1.19569 1.20136 1.18889 1.74674 1.27346 1.19752 1.11593 1.22922 0.97696 0.84156 0.90110 0.92225 0.92379 0.91855 0.92260 0.90546 0.84409 0.70568 0.74339 0.90530 0.94891 0.95426 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 326. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.09 37.16 0.37 -1.46 16 2 C 0.14 1.75 7.00 -4.04 -0.03 1.72 16 3 N -0.57 -10.15 2.91 -175.69 -0.51 -10.66 16 4 C -0.03 -0.68 11.45 -15.10 -0.17 -0.85 16 5 C -0.38 -8.28 7.48 -15.10 -0.11 -8.39 16 6 S 2.25 48.08 5.45 -107.50 -0.59 47.50 16 7 O -0.92 -16.95 13.56 -58.38 -0.79 -17.74 16 8 O -0.92 -23.86 18.14 -58.38 -1.06 -24.92 16 9 N -0.91 -20.97 5.82 31.50 0.18 -20.79 16 10 C -0.23 -5.44 9.94 -15.06 -0.15 -5.59 16 11 H 0.11 2.44 7.82 -52.49 -0.41 2.03 16 12 C 0.02 0.47 5.50 -17.43 -0.10 0.37 16 13 N -0.83 -20.52 13.06 55.49 0.72 -19.79 16 14 Si 0.93 18.08 29.55 -169.99 -5.02 13.05 16 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 16 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 N -0.58 -13.23 11.73 -61.13 -0.72 -13.95 16 19 C 0.27 5.34 8.27 -62.99 -0.52 4.82 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.67 7.99 -51.93 -0.41 0.26 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 25 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 26 H 0.43 5.69 9.03 67.38 0.61 6.30 16 27 H 0.42 10.09 7.92 -34.47 -0.27 9.82 16 28 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.54 8.01 -51.93 -0.42 0.12 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -31.95 279.05 -6.86 -38.80 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -2.57 Total: 13.67 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.71 Total: -9.38 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -0.32 Total: -65.19 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.85 Total: -42.65 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.05 kcal Atomic # 16 Polarization: 48.08 SS G_CDS: -0.59 Total: 47.50 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.95 -6.86 -38.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.022 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds