Wall clock time and date at job start Mon Mar 30 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.29057 * 126.38431 * 115.02474 * 3 2 1 5 5 C 1.47152 * 109.78679 * 179.97438 * 4 3 2 6 6 S 1.76203 * 125.11086 * 180.02562 * 5 4 3 7 7 O 1.52196 * 109.46781 * 299.99683 * 6 5 4 8 8 O 1.42099 * 109.46908 * 59.99322 * 6 5 4 9 9 N 1.65597 * 109.47001 * 179.97438 * 6 5 4 10 10 C 1.36942 * 119.99573 * 180.02562 * 9 6 5 11 11 H 1.08002 * 119.99872 * 359.97438 * 10 9 6 12 12 C 1.38813 * 119.99970 * 180.02562 * 10 9 6 13 13 N 1.31614 * 119.99748 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99967 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47419 * 89.99832 * 14 12 10 16 16 H 1.48505 * 109.46736 * 209.99799 * 14 12 10 17 17 H 1.48504 * 109.47130 * 329.99204 * 14 12 10 18 18 N 1.29065 * 109.78575 * 359.97438 * 5 4 3 19 19 C 1.46851 * 126.38984 * 294.71559 * 3 2 1 20 20 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 22 22 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 24 24 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 25 25 H 1.08002 * 125.11073 * 359.96411 * 4 3 2 26 26 H 0.96698 * 114.00271 * 300.00125 * 7 6 5 27 27 H 0.96997 * 120.00338 * 359.97438 * 9 6 5 28 28 H 0.97000 * 119.99761 * 180.02562 * 13 12 10 29 29 H 1.09003 * 110.14583 * 299.16298 * 19 3 2 30 30 H 1.08997 * 110.15195 * 60.90130 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.6879 1.9565 0.9414 5 6 2.9909 3.3452 0.5603 6 16 3.8881 4.4948 1.5493 7 8 3.1612 4.7032 2.8702 8 8 5.1913 3.9873 1.8008 9 7 4.0038 5.9396 0.7484 10 6 4.6633 6.9916 1.3259 11 1 5.1075 6.8792 2.3038 12 6 4.7598 8.2029 0.6547 13 7 4.2179 8.3400 -0.5368 14 14 5.6600 9.6378 1.4422 15 1 7.0936 9.5940 1.0575 16 1 5.0610 10.9140 0.9755 17 1 5.5409 9.5462 2.9196 18 7 2.5017 3.5943 -0.6078 19 6 1.8428 2.3674 -1.0739 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3635 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.9816 1.4891 1.8697 26 1 2.2632 5.0488 2.7747 27 1 3.6050 6.0404 -0.1301 28 1 4.2857 9.1863 -1.0059 29 1 2.3128 2.0117 -1.9908 30 1 0.7822 2.5538 -1.2428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:40 Heat of formation + Delta-G solvation = 0.097692 kcal Electronic energy + Delta-G solvation = -16136.623162 eV Core-core repulsion = 13289.299381 eV Total energy + Delta-G solvation = -2847.323781 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75841 -37.39667 -36.22900 -35.86524 -35.58518 -32.24928 -31.56071 -29.32829 -26.04326 -25.12522 -22.48698 -21.73343 -20.56918 -19.41098 -18.42590 -18.21283 -16.89032 -16.54538 -16.19819 -16.05654 -15.38500 -15.24645 -14.95532 -14.26281 -14.02001 -13.75276 -13.36959 -12.96802 -12.93648 -12.75340 -12.50662 -12.19058 -12.16655 -11.86479 -11.77117 -11.61277 -11.48814 -11.07040 -10.57185 -9.74425 -8.07035 -5.85231 -5.53309 -0.77880 1.42465 1.46241 1.49535 1.56432 1.72666 2.36924 2.67597 3.01780 3.29003 3.54396 3.89331 4.01416 4.08763 4.22026 4.35271 4.42564 4.47436 4.73251 4.86113 5.06827 5.24010 5.26739 5.31582 5.96928 6.03842 6.32150 6.94767 7.18752 7.38722 7.89056 9.13965 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.047997 B = 0.005933 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.225259 B = 4717.957977 C = 5043.033003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 N -0.494 5.494 4 C 0.174 3.826 5 C -0.367 4.367 6 S 2.128 3.872 7 O -0.932 6.932 8 O -1.028 7.028 9 N -0.965 5.965 10 C -0.305 4.305 11 H 0.067 0.933 12 C -0.038 4.038 13 N -0.943 5.943 14 Si 0.967 3.033 15 H -0.284 1.284 16 H -0.277 1.277 17 H -0.268 1.268 18 N -0.521 5.521 19 C 0.192 3.808 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.123 0.877 25 H 0.215 0.785 26 H 0.437 0.563 27 H 0.395 0.605 28 H 0.261 0.739 29 H 0.104 0.896 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 -19.904 0.773 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.190 5.190 4 C -0.009 4.009 5 C -0.611 4.611 6 S 2.229 3.771 7 O -0.783 6.783 8 O -1.011 7.011 9 N -0.713 5.713 10 C -0.438 4.438 11 H 0.085 0.915 12 C -0.235 4.235 13 N -0.589 5.589 14 Si 0.793 3.207 15 H -0.211 1.211 16 H -0.202 1.202 17 H -0.192 1.192 18 N -0.265 5.265 19 C -0.022 4.022 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.120 0.880 23 H 0.122 0.878 24 H 0.141 0.859 25 H 0.231 0.769 26 H 0.300 0.700 27 H 0.226 0.774 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.784 -19.462 0.985 22.773 hybrid contribution 0.201 0.473 -0.236 0.565 sum -11.583 -18.989 0.750 22.255 Atomic orbital electron populations 1.22128 0.92789 1.04692 1.02865 1.22358 0.96586 0.76396 1.06869 1.47177 1.39187 1.14345 1.18262 1.25730 0.86928 0.94799 0.93469 1.38822 1.21853 1.00820 0.99589 1.50292 0.82884 0.72329 0.71622 1.85557 1.38991 1.85063 1.68733 1.92848 1.44838 1.79888 1.83557 1.51103 1.66099 1.24582 1.29488 1.19423 1.30839 0.92308 1.01263 0.91470 1.25809 1.00122 1.00767 0.96794 1.69828 1.48641 1.26125 1.14315 0.85304 0.78177 0.78661 0.78514 1.21062 1.20196 1.19242 1.74899 1.19508 1.20691 1.11387 1.24367 1.02623 0.83114 0.92142 0.92194 0.92279 0.88015 0.87770 0.85866 0.76857 0.69967 0.77367 0.92999 0.87840 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.09 71.98 0.73 -0.13 16 2 C 0.10 0.63 7.00 86.38 0.60 1.23 16 3 N -0.49 -8.45 2.91 -709.76 -2.07 -10.52 16 4 C 0.17 3.96 11.45 87.44 1.00 4.97 16 5 C -0.37 -12.95 7.48 87.44 0.65 -12.29 16 6 S 2.13 99.02 5.45 -56.49 -0.31 98.71 16 7 O -0.93 -38.01 13.56 -126.85 -1.72 -39.73 16 8 O -1.03 -59.18 18.14 -126.85 -2.30 -61.48 16 9 N -0.96 -54.29 5.82 -54.26 -0.32 -54.60 16 10 C -0.31 -18.93 9.94 84.03 0.84 -18.10 16 11 H 0.07 4.20 7.82 -2.91 -0.02 4.18 16 12 C -0.04 -2.29 5.50 84.86 0.47 -1.83 16 13 N -0.94 -59.34 13.06 21.65 0.28 -59.06 16 14 Si 0.97 48.03 29.55 68.60 2.03 50.06 16 15 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 18 N -0.52 -18.73 11.73 -347.31 -4.08 -22.80 16 19 C 0.19 4.49 8.27 170.69 1.41 5.90 16 20 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 21 H 0.06 0.40 7.99 -2.39 -0.02 0.39 16 22 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 23 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.12 0.25 8.06 -2.39 -0.02 0.23 16 25 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 26 H 0.44 13.16 9.03 -87.93 -0.79 12.37 16 27 H 0.39 22.83 7.92 -96.75 -0.77 22.06 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.11 2.06 8.01 -2.39 -0.02 2.04 16 Total: -1.00 -91.93 279.05 -3.17 -95.10 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.39 Total: 24.58 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 5.70 Total: -20.25 kcal Atomic # 7 Polarization: -140.81 SS G_CDS: -6.17 Total: -146.98 kcal Atomic # 8 Polarization: -97.19 SS G_CDS: -4.02 Total: -101.21 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Atomic # 16 Polarization: 99.02 SS G_CDS: -0.31 Total: 98.71 kcal Total: -91.93 -3.17 -95.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.197 kcal (2) G-P(sol) polarization free energy of solvation -91.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds