Wall clock time and date at job start Mon Mar 30 2020 03:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28595 * 124.62080 * 2 1 4 4 C 1.31376 * 108.72040 * 179.97438 * 3 2 1 5 5 C 1.39679 * 105.90034 * 0.02562 * 4 3 2 6 6 S 1.76199 * 127.05030 * 179.97438 * 5 4 3 7 7 O 1.42096 * 106.40321 * 336.45915 * 6 5 4 8 8 O 1.42108 * 106.39883 * 203.53924 * 6 5 4 9 9 N 1.65597 * 107.22117 * 90.00073 * 6 5 4 10 10 C 1.46499 * 119.99926 * 64.72196 * 9 6 5 11 11 C 1.50700 * 109.46995 * 165.27893 * 10 9 6 12 12 H 1.07999 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99999 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99912 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47449 * 89.99869 * 15 13 11 17 17 H 1.48506 * 109.47067 * 210.00130 * 15 13 11 18 18 H 1.48498 * 109.47228 * 329.99775 * 15 13 11 19 19 N 1.28600 * 124.61471 * 180.25336 * 2 1 3 20 20 H 1.08994 * 109.47601 * 90.02184 * 1 2 3 21 21 H 1.09006 * 109.47152 * 210.02302 * 1 2 3 22 22 H 1.09008 * 109.46898 * 330.02003 * 1 2 3 23 23 H 1.08004 * 127.05149 * 179.97438 * 4 3 2 24 24 H 0.97001 * 120.00224 * 245.00409 * 9 6 5 25 25 H 1.09007 * 109.47241 * 285.27714 * 10 9 6 26 26 H 1.08995 * 109.47308 * 45.27753 * 10 9 6 27 27 H 0.96994 * 120.00181 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0582 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4591 -0.6985 0.0003 6 16 4.8654 -1.7601 0.0002 7 8 5.9386 -1.0044 -0.5441 8 8 4.4325 -2.9992 -0.5445 9 7 5.2566 -2.0558 1.5819 10 6 4.3254 -2.7904 2.4417 11 6 5.0412 -3.2387 3.6898 12 1 6.0853 -2.9999 3.8288 13 6 4.3632 -3.9538 4.6542 14 7 3.0917 -4.2442 4.4852 15 14 5.2507 -4.5101 6.2009 16 1 5.1285 -3.4621 7.2459 17 1 4.6436 -5.7730 6.6929 18 1 6.6856 -4.7377 5.8935 19 7 2.1955 -1.0584 -0.0047 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5136 23 1 4.3211 1.3490 0.0003 24 1 6.1005 -1.7390 1.9402 25 1 3.4928 -2.1415 2.7137 26 1 3.9473 -3.6617 1.9069 27 1 2.6147 -4.7469 5.1638 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662391.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:52 Heat of formation + Delta-G solvation = 33.231619 kcal Electronic energy + Delta-G solvation = -15830.505117 eV Core-core repulsion = 12946.503698 eV Total energy + Delta-G solvation = -2884.001419 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.60768 -36.72355 -35.36788 -34.65234 -33.89171 -32.56304 -32.16748 -28.00506 -26.75959 -23.48872 -22.51650 -22.06530 -19.08615 -17.83088 -17.45421 -16.90037 -16.46539 -15.83074 -15.35479 -14.83116 -14.55522 -13.53183 -13.32084 -13.11695 -12.66242 -12.34240 -12.13896 -11.86062 -11.66959 -11.51195 -11.12503 -10.95772 -10.87590 -10.75158 -10.52107 -10.13065 -9.67486 -9.43249 -8.95241 -8.26344 -6.17831 -4.22935 0.84711 1.56760 2.04461 2.29145 3.25049 3.31625 3.34962 3.66527 3.98714 4.19646 4.34353 4.73430 4.83986 4.93405 5.12283 5.18605 5.27173 5.80708 5.85528 6.42386 6.49584 7.28148 7.34842 7.78022 7.79894 8.06669 8.16390 8.81417 9.41921 10.92493 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.007360 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.217921 B = 3803.251112 C = 4466.141094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.143 5.143 3 N -0.297 5.297 4 C 0.059 3.941 5 C -0.553 4.553 6 S 2.726 3.274 7 O -0.967 6.967 8 O -0.944 6.944 9 N -1.094 6.094 10 C 0.247 3.753 11 C -0.530 4.530 12 H 0.067 0.933 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.904 3.096 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.271 1.271 19 N -0.171 5.171 20 H 0.094 0.906 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.212 0.788 24 H 0.413 0.587 25 H 0.019 0.981 26 H 0.043 0.957 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 9.006 -6.930 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.046 5.046 3 N -0.136 5.136 4 C -0.125 4.125 5 C -0.794 4.794 6 S 2.805 3.195 7 O -0.957 6.957 8 O -0.934 6.934 9 N -0.859 5.859 10 C 0.124 3.876 11 C -0.570 4.570 12 H 0.085 0.915 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.732 3.268 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.196 1.196 19 N -0.018 5.018 20 H 0.112 0.888 21 H 0.129 0.871 22 H 0.124 0.876 23 H 0.228 0.772 24 H 0.248 0.752 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.894 8.585 -7.675 12.512 hybrid contribution 0.893 0.365 1.424 1.720 sum -4.001 8.951 -6.251 11.628 Atomic orbital electron populations 1.22301 0.69822 1.06612 1.05289 1.48573 1.09567 0.99692 1.46784 1.74036 1.03837 1.15619 1.20098 1.24533 0.94959 0.92597 1.00435 1.36486 1.11901 1.10231 1.20738 1.01328 0.71773 0.73084 0.73327 1.93556 1.50771 1.73511 1.77826 1.93582 1.82432 1.40244 1.77124 1.55452 1.29962 1.70007 1.30444 1.19100 0.87656 0.91120 0.89707 1.21204 0.97337 1.35919 1.02506 0.91450 1.24983 0.94955 0.95595 0.98688 1.69951 1.08660 1.39114 1.35083 0.86399 0.79827 0.78129 0.82475 1.20569 1.21028 1.19607 1.74194 1.01764 1.15237 1.10604 0.88795 0.87106 0.87552 0.77153 0.75223 0.96342 0.93952 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 11.57 59.85 0.69 1.60 15 2 N -0.14 -2.18 4.35 -16.64 -0.07 -2.26 15 3 N -0.30 -4.60 12.05 30.68 0.37 -4.23 15 4 C 0.06 0.92 12.05 -17.21 -0.21 0.71 15 5 C -0.55 -9.97 7.35 -17.21 -0.13 -10.09 15 6 S 2.73 51.55 5.91 -107.50 -0.64 50.91 15 7 O -0.97 -18.03 17.91 -57.17 -1.02 -19.05 15 8 O -0.94 -21.03 17.50 -57.17 -1.00 -22.03 15 9 N -1.09 -22.03 5.99 -11.66 -0.07 -22.10 15 10 C 0.25 6.19 5.97 -5.19 -0.03 6.16 15 11 C -0.53 -14.17 9.27 -34.44 -0.32 -14.49 15 12 H 0.07 1.70 7.65 -52.49 -0.40 1.30 15 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 14 N -0.89 -25.54 13.29 55.43 0.74 -24.80 15 15 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 15 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 19 N -0.17 -3.16 12.05 31.32 0.38 -2.79 15 20 H 0.09 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.11 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.11 0.73 8.14 -51.92 -0.42 0.31 15 23 H 0.21 2.44 8.06 -52.48 -0.42 2.01 15 24 H 0.41 7.34 8.54 -34.47 -0.29 7.04 15 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 26 H 0.04 1.16 7.76 -51.93 -0.40 0.75 15 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -35.08 264.46 -4.79 -39.87 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -2.35 Total: 1.32 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.09 Total: -14.54 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 1.34 Total: -56.17 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -2.02 Total: -41.09 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.64 Total: 50.91 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.08 -4.79 -39.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662391.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.106 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds