Wall clock time and date at job start Mon Mar 30 2020 03:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28595 * 124.62080 * 2 1 4 4 C 1.31376 * 108.72040 * 179.97438 * 3 2 1 5 5 C 1.39679 * 105.90034 * 0.02562 * 4 3 2 6 6 S 1.76199 * 127.05030 * 179.97438 * 5 4 3 7 7 O 1.42096 * 106.40321 * 336.45915 * 6 5 4 8 8 O 1.42108 * 106.39883 * 203.53924 * 6 5 4 9 9 N 1.65597 * 107.22117 * 90.00073 * 6 5 4 10 10 C 1.46499 * 119.99926 * 64.72196 * 9 6 5 11 11 C 1.50700 * 109.46995 * 165.27893 * 10 9 6 12 12 H 1.07999 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99999 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99912 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47449 * 89.99869 * 15 13 11 17 17 H 1.48506 * 109.47067 * 210.00130 * 15 13 11 18 18 H 1.48498 * 109.47228 * 329.99775 * 15 13 11 19 19 N 1.28600 * 124.61471 * 180.25336 * 2 1 3 20 20 H 1.08994 * 109.47601 * 90.02184 * 1 2 3 21 21 H 1.09006 * 109.47152 * 210.02302 * 1 2 3 22 22 H 1.09008 * 109.46898 * 330.02003 * 1 2 3 23 23 H 1.08004 * 127.05149 * 179.97438 * 4 3 2 24 24 H 0.97001 * 120.00224 * 245.00409 * 9 6 5 25 25 H 1.09007 * 109.47241 * 285.27714 * 10 9 6 26 26 H 1.08995 * 109.47308 * 45.27753 * 10 9 6 27 27 H 0.96994 * 120.00181 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0582 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4591 -0.6985 0.0003 6 16 4.8654 -1.7601 0.0002 7 8 5.9386 -1.0044 -0.5441 8 8 4.4325 -2.9992 -0.5445 9 7 5.2566 -2.0558 1.5819 10 6 4.3254 -2.7904 2.4417 11 6 5.0412 -3.2387 3.6898 12 1 6.0853 -2.9999 3.8288 13 6 4.3632 -3.9538 4.6542 14 7 3.0917 -4.2442 4.4852 15 14 5.2507 -4.5101 6.2009 16 1 5.1285 -3.4621 7.2459 17 1 4.6436 -5.7730 6.6929 18 1 6.6856 -4.7377 5.8935 19 7 2.1955 -1.0584 -0.0047 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5136 23 1 4.3211 1.3490 0.0003 24 1 6.1005 -1.7390 1.9402 25 1 3.4928 -2.1415 2.7137 26 1 3.9473 -3.6617 1.9069 27 1 2.6147 -4.7469 5.1638 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662391.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:52 Heat of formation + Delta-G solvation = 2.985353 kcal Electronic energy + Delta-G solvation = -15831.816693 eV Core-core repulsion = 12946.503698 eV Total energy + Delta-G solvation = -2885.312995 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.83963 -38.32132 -36.99264 -36.51485 -34.97773 -34.15073 -33.82977 -29.00402 -28.76201 -24.79161 -24.48914 -23.24569 -20.63817 -19.35789 -18.96372 -18.22117 -17.82951 -17.52123 -17.14102 -16.36835 -15.89956 -15.26372 -14.64046 -14.15162 -14.05450 -13.96427 -13.61879 -13.59478 -13.28436 -13.16578 -12.75245 -12.56097 -12.49924 -12.19384 -12.09450 -11.80287 -11.41736 -10.91931 -10.79978 -10.18963 -8.24584 -6.37537 -0.67966 0.24924 0.82362 1.30938 1.46071 1.47555 1.58764 2.11667 2.42905 2.66316 2.75626 3.10566 3.54000 3.80918 4.19383 4.21024 4.42520 4.57215 4.61758 4.71236 5.23950 5.29442 5.39906 5.74240 5.95623 6.32411 6.77694 6.82646 7.32533 8.86897 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.007360 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.217921 B = 3803.251112 C = 4466.141094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.133 5.133 3 N -0.297 5.297 4 C 0.062 3.938 5 C -0.578 4.578 6 S 2.753 3.247 7 O -0.961 6.961 8 O -0.982 6.982 9 N -1.092 6.092 10 C 0.262 3.738 11 C -0.549 4.549 12 H 0.081 0.919 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.976 3.024 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.261 1.261 19 N -0.205 5.205 20 H 0.122 0.878 21 H 0.115 0.885 22 H 0.132 0.868 23 H 0.246 0.754 24 H 0.424 0.576 25 H 0.003 0.997 26 H 0.012 0.988 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 10.186 -6.438 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.038 5.038 3 N -0.137 5.137 4 C -0.122 4.122 5 C -0.819 4.819 6 S 2.835 3.165 7 O -0.951 6.951 8 O -0.972 6.972 9 N -0.856 5.856 10 C 0.137 3.863 11 C -0.588 4.588 12 H 0.099 0.901 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.800 3.200 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.185 1.185 19 N -0.054 5.054 20 H 0.140 0.860 21 H 0.134 0.866 22 H 0.151 0.849 23 H 0.262 0.738 24 H 0.261 0.739 25 H 0.021 0.979 26 H 0.030 0.970 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.453 9.769 -7.190 12.921 hybrid contribution 0.654 0.091 1.188 1.359 sum -3.799 9.860 -6.001 12.152 Atomic orbital electron populations 1.22894 0.66875 1.08213 1.07677 1.49172 1.11184 0.98876 1.44617 1.74044 1.03887 1.15579 1.20170 1.25148 0.96074 0.91830 0.99112 1.36070 1.11557 1.11241 1.23018 1.00268 0.71623 0.72356 0.72283 1.93554 1.50957 1.73184 1.77368 1.93533 1.83164 1.42823 1.77692 1.55211 1.30024 1.70046 1.30308 1.18623 0.87948 0.90054 0.89648 1.21654 0.98142 1.35915 1.03097 0.90141 1.25945 0.95652 0.95578 1.02166 1.70081 1.10341 1.39974 1.36393 0.85283 0.78880 0.77610 0.78233 1.19613 1.20988 1.18488 1.74147 1.02376 1.16904 1.11968 0.85999 0.86602 0.84936 0.73811 0.73927 0.97911 0.97047 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 11.57 127.77 1.48 2.80 15 2 N -0.13 -3.89 4.35 -206.54 -0.90 -4.79 15 3 N -0.30 -8.64 12.05 -56.86 -0.69 -9.32 15 4 C 0.06 1.81 12.05 85.11 1.03 2.83 15 5 C -0.58 -20.55 7.35 85.11 0.63 -19.93 15 6 S 2.75 104.03 5.91 -56.49 -0.33 103.69 15 7 O -0.96 -34.68 17.91 -128.00 -2.29 -36.97 15 8 O -0.98 -44.74 17.50 -128.00 -2.24 -46.98 15 9 N -1.09 -44.03 5.99 -190.79 -1.14 -45.17 15 10 C 0.26 13.39 5.97 85.63 0.51 13.90 15 11 C -0.55 -29.33 9.27 25.60 0.24 -29.09 15 12 H 0.08 3.97 7.65 -2.91 -0.02 3.95 15 13 C 0.01 0.35 5.46 84.66 0.46 0.81 15 14 N -0.93 -53.97 13.29 21.45 0.28 -53.68 15 15 Si 0.98 42.02 29.54 68.60 2.03 44.05 15 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 19 N -0.21 -7.54 12.05 -54.82 -0.66 -8.20 15 20 H 0.12 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.12 1.80 8.14 -2.38 -0.02 1.78 15 22 H 0.13 1.47 8.14 -2.38 -0.02 1.45 15 23 H 0.25 4.98 8.06 -2.91 -0.02 4.96 15 24 H 0.42 14.78 8.54 -96.74 -0.83 13.95 15 25 H 0.00 0.16 8.14 -2.38 -0.02 0.14 15 26 H 0.01 0.66 7.76 -2.39 -0.02 0.64 15 27 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 Total: -1.00 -74.73 264.46 -1.22 -75.95 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.38 Total: 10.11 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 4.34 Total: -28.68 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -3.10 Total: -121.17 kcal Atomic # 8 Polarization: -79.43 SS G_CDS: -4.53 Total: -83.96 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 104.03 SS G_CDS: -0.33 Total: 103.69 kcal Total: -74.73 -1.22 -75.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662391.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.932 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds