Wall clock time and date at job start Mon Mar 30 2020 03:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.82253 * 2 1 4 4 H 1.08003 * 119.99835 * 239.43406 * 3 2 1 5 5 C 1.37873 * 120.00518 * 59.43001 * 3 2 1 6 6 N 1.31521 * 119.99629 * 0.02562 * 5 3 2 7 7 Si 1.86793 * 120.00361 * 180.02562 * 5 3 2 8 8 H 1.48507 * 109.46952 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47674 * 119.99929 * 7 5 3 10 10 H 1.48502 * 109.47276 * 240.00430 * 7 5 3 11 11 C 1.54380 * 109.90627 * 239.06387 * 2 1 3 12 12 C 1.55324 * 102.25371 * 261.79818 * 11 2 1 13 13 C 1.54895 * 100.93349 * 325.91084 * 12 11 2 14 14 C 1.55842 * 111.91910 * 273.93035 * 13 12 11 15 15 S 1.83097 * 82.45958 * 215.43125 * 14 13 12 16 16 O 1.42099 * 111.36085 * 130.42507 * 15 14 13 17 17 O 1.42099 * 111.35874 * 269.36747 * 15 14 13 18 18 C 1.55919 * 111.96511 * 158.90081 * 13 12 11 19 19 O 1.43255 * 109.82879 * 120.87984 * 2 1 3 20 20 H 1.09005 * 109.47127 * 300.57157 * 1 2 3 21 21 H 1.08994 * 109.46883 * 60.56774 * 1 2 3 22 22 H 1.08999 * 109.47129 * 180.57223 * 1 2 3 23 23 H 0.96997 * 119.99644 * 179.97438 * 6 5 3 24 24 H 1.09000 * 110.85044 * 19.98365 * 11 2 1 25 25 H 1.08994 * 110.85051 * 143.61020 * 11 2 1 26 26 H 1.09000 * 111.12407 * 207.99604 * 12 11 2 27 27 H 1.08998 * 111.12467 * 83.82836 * 12 11 2 28 28 H 1.09002 * 114.38600 * 102.02320 * 14 13 12 29 29 H 1.09002 * 114.38390 * 328.83737 * 14 13 12 30 30 H 1.09000 * 114.34582 * 31.14211 * 18 13 12 31 31 H 1.09000 * 114.43918 * 257.94324 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6717 1.7644 -0.8054 5 6 1.7037 2.2723 1.0280 6 7 0.9361 1.8499 2.0090 7 14 2.3365 4.0297 1.0276 8 1 3.1734 4.2542 -0.1785 9 1 1.1871 4.9699 1.0138 10 1 3.1519 4.2625 2.2467 11 6 2.0557 -0.7462 -1.2451 12 6 2.3715 -2.1563 -0.6754 13 6 2.8413 -1.7963 0.7561 14 6 4.3607 -1.4524 0.8004 15 16 4.2536 -2.2785 2.4310 16 8 5.2733 -3.2562 2.5839 17 8 3.9581 -1.3484 3.4639 18 6 2.7286 -3.0094 1.7292 19 8 2.0160 -0.6917 1.1566 20 1 -0.3634 0.5227 0.8849 21 1 -0.3633 0.5050 -0.8950 22 1 -0.3633 -1.0276 0.0103 23 1 0.6990 2.4510 2.7324 24 1 1.2877 -0.8027 -2.0165 25 1 2.9587 -0.2719 -1.6291 26 1 3.1687 -2.6389 -1.2408 27 1 1.4774 -2.7792 -0.6504 28 1 4.5794 -0.3857 0.8498 29 1 4.9642 -1.9846 0.0651 30 1 2.8718 -3.9804 1.2552 31 1 1.8658 -2.9753 2.3943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:34 Heat of formation + Delta-G solvation = -84.081220 kcal Electronic energy + Delta-G solvation = -17185.106681 eV Core-core repulsion = 14367.265788 eV Total energy + Delta-G solvation = -2817.840893 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.13343 -36.67412 -35.56333 -34.21230 -31.98896 -31.29652 -28.18808 -27.16668 -25.32876 -23.02102 -20.01694 -19.35246 -18.26298 -16.60478 -16.24327 -16.11475 -15.61565 -14.82914 -14.52777 -14.13090 -13.56899 -13.12015 -12.72482 -12.39729 -12.09183 -11.91105 -11.70720 -11.61854 -11.34179 -11.18882 -10.98508 -10.81253 -10.68521 -10.49906 -10.23446 -10.08050 -9.82062 -9.41699 -9.21157 -8.54474 -8.14326 -6.00881 -4.18655 0.46071 2.68693 3.27156 3.36673 3.38094 3.78437 4.12558 4.38460 4.42027 4.67091 5.05854 5.30208 5.32162 5.38461 5.74477 5.75702 5.92192 6.01497 6.07673 6.22829 6.36601 6.49595 6.66881 6.82327 7.00235 7.25652 7.72923 7.99345 8.25753 8.39004 8.91157 9.53654 11.01030 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.010070 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.756190 B = 2779.923274 C = 3301.505239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.226 3.774 3 C -0.540 4.540 4 H 0.061 0.939 5 C 0.082 3.918 6 N -0.854 5.854 7 Si 0.887 3.113 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.281 1.281 11 C -0.140 4.140 12 C -0.126 4.126 13 C 0.055 3.945 14 C -0.565 4.565 15 S 2.368 3.632 16 O -0.960 6.960 17 O -0.906 6.906 18 C -0.558 4.558 19 O -0.321 6.321 20 H 0.091 0.909 21 H 0.039 0.961 22 H 0.013 0.987 23 H 0.262 0.738 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 -8.362 -3.744 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.190 3.810 3 C -0.577 4.577 4 H 0.079 0.921 5 C -0.124 4.124 6 N -0.489 5.489 7 Si 0.714 3.286 8 H -0.197 1.197 9 H -0.209 1.209 10 H -0.207 1.207 11 C -0.178 4.178 12 C -0.165 4.165 13 C 0.010 3.990 14 C -0.696 4.696 15 S 2.553 3.447 16 O -0.957 6.957 17 O -0.903 6.903 18 C -0.687 4.687 19 O -0.239 6.239 20 H 0.110 0.890 21 H 0.058 0.942 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.445 -8.279 -2.357 9.272 hybrid contribution -0.286 1.054 -1.100 1.550 sum 3.159 -7.225 -3.457 8.610 Atomic orbital electron populations 1.21977 0.96925 0.97816 1.03000 1.19795 0.91237 0.90508 0.79495 1.21254 1.33357 0.94443 1.08683 0.92078 1.25018 0.94055 0.98258 0.95096 1.69930 1.33887 1.35224 1.09881 0.86638 0.78904 0.84857 0.78165 1.19741 1.20899 1.20698 1.23224 1.01184 0.93622 0.99748 1.23060 1.00911 0.98757 0.93756 1.23664 0.90415 0.88445 0.96455 1.31258 1.01405 1.14964 1.21926 1.10409 0.77951 0.77631 0.78722 1.93521 1.55616 1.59794 1.86800 1.93698 1.83855 1.60834 1.51930 1.31005 1.22466 1.04453 1.10790 1.88898 1.63306 1.38747 1.32992 0.88996 0.94229 0.96818 0.92809 0.91789 0.91298 0.91093 0.90728 0.82834 0.84146 0.83741 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.51 37.16 0.32 -2.93 16 2 C 0.23 5.34 0.82 -91.04 -0.07 5.27 16 3 C -0.54 -14.21 8.22 -34.44 -0.28 -14.49 16 4 H 0.06 1.58 7.52 -52.48 -0.39 1.18 16 5 C 0.08 2.23 5.26 -17.82 -0.09 2.14 16 6 N -0.85 -24.22 10.93 55.43 0.61 -23.61 16 7 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 8 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C -0.14 -2.67 6.00 -24.78 -0.15 -2.81 16 12 C -0.13 -2.01 6.18 -24.50 -0.15 -2.17 16 13 C 0.06 0.99 0.87 -86.54 -0.08 0.91 16 14 C -0.56 -8.89 8.27 38.67 0.32 -8.57 16 15 S 2.37 38.42 6.81 -107.50 -0.73 37.69 16 16 O -0.96 -16.62 18.18 -57.47 -1.04 -17.66 16 17 O -0.91 -19.25 18.18 -57.47 -1.04 -20.29 16 18 C -0.56 -8.00 8.37 38.72 0.32 -7.67 16 19 O -0.32 -7.63 9.76 -35.23 -0.34 -7.97 16 20 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 21 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 25 H 0.07 1.30 7.66 -51.93 -0.40 0.90 16 26 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 27 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 28 H 0.15 2.67 8.14 -51.93 -0.42 2.25 16 29 H 0.14 1.68 7.99 -51.93 -0.41 1.26 16 30 H 0.14 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.15 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -33.74 269.32 -7.40 -41.14 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.01 Total: 1.07 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 0.13 Total: -30.32 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.61 Total: -23.61 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -2.43 Total: -45.92 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 38.42 SS G_CDS: -0.73 Total: 37.69 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.74 -7.40 -41.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.940 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds