Wall clock time and date at job start Mon Mar 30 2020 03:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.82253 * 2 1 4 4 H 1.08003 * 119.99835 * 239.43406 * 3 2 1 5 5 C 1.37873 * 120.00518 * 59.43001 * 3 2 1 6 6 N 1.31521 * 119.99629 * 0.02562 * 5 3 2 7 7 Si 1.86793 * 120.00361 * 180.02562 * 5 3 2 8 8 H 1.48507 * 109.46952 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47674 * 119.99929 * 7 5 3 10 10 H 1.48502 * 109.47276 * 240.00430 * 7 5 3 11 11 C 1.54380 * 109.90627 * 239.06387 * 2 1 3 12 12 C 1.55324 * 102.25371 * 261.79818 * 11 2 1 13 13 C 1.54895 * 100.93349 * 325.91084 * 12 11 2 14 14 C 1.55842 * 111.91910 * 273.93035 * 13 12 11 15 15 S 1.83097 * 82.45958 * 215.43125 * 14 13 12 16 16 O 1.42099 * 111.36085 * 130.42507 * 15 14 13 17 17 O 1.42099 * 111.35874 * 269.36747 * 15 14 13 18 18 C 1.55919 * 111.96511 * 158.90081 * 13 12 11 19 19 O 1.43255 * 109.82879 * 120.87984 * 2 1 3 20 20 H 1.09005 * 109.47127 * 300.57157 * 1 2 3 21 21 H 1.08994 * 109.46883 * 60.56774 * 1 2 3 22 22 H 1.08999 * 109.47129 * 180.57223 * 1 2 3 23 23 H 0.96997 * 119.99644 * 179.97438 * 6 5 3 24 24 H 1.09000 * 110.85044 * 19.98365 * 11 2 1 25 25 H 1.08994 * 110.85051 * 143.61020 * 11 2 1 26 26 H 1.09000 * 111.12407 * 207.99604 * 12 11 2 27 27 H 1.08998 * 111.12467 * 83.82836 * 12 11 2 28 28 H 1.09002 * 114.38600 * 102.02320 * 14 13 12 29 29 H 1.09002 * 114.38390 * 328.83737 * 14 13 12 30 30 H 1.09000 * 114.34582 * 31.14211 * 18 13 12 31 31 H 1.09000 * 114.43918 * 257.94324 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6717 1.7644 -0.8054 5 6 1.7037 2.2723 1.0280 6 7 0.9361 1.8499 2.0090 7 14 2.3365 4.0297 1.0276 8 1 3.1734 4.2542 -0.1785 9 1 1.1871 4.9699 1.0138 10 1 3.1519 4.2625 2.2467 11 6 2.0557 -0.7462 -1.2451 12 6 2.3715 -2.1563 -0.6754 13 6 2.8413 -1.7963 0.7561 14 6 4.3607 -1.4524 0.8004 15 16 4.2536 -2.2785 2.4310 16 8 5.2733 -3.2562 2.5839 17 8 3.9581 -1.3484 3.4639 18 6 2.7286 -3.0094 1.7292 19 8 2.0160 -0.6917 1.1566 20 1 -0.3634 0.5227 0.8849 21 1 -0.3633 0.5050 -0.8950 22 1 -0.3633 -1.0276 0.0103 23 1 0.6990 2.4510 2.7324 24 1 1.2877 -0.8027 -2.0165 25 1 2.9587 -0.2719 -1.6291 26 1 3.1687 -2.6389 -1.2408 27 1 1.4774 -2.7792 -0.6504 28 1 4.5794 -0.3857 0.8498 29 1 4.9642 -1.9846 0.0651 30 1 2.8718 -3.9804 1.2552 31 1 1.8658 -2.9753 2.3943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:34 Heat of formation + Delta-G solvation = -110.150733 kcal Electronic energy + Delta-G solvation = -17186.237139 eV Core-core repulsion = 14367.265788 eV Total energy + Delta-G solvation = -2818.971352 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63806 -38.06230 -36.96310 -35.84038 -33.78132 -32.87071 -29.79014 -28.40268 -27.27113 -24.54435 -21.55454 -20.88176 -19.57345 -18.46823 -17.58639 -17.45290 -16.97915 -16.60193 -16.10794 -15.60432 -15.27455 -14.41769 -14.15271 -13.92366 -13.54342 -13.53356 -13.14349 -13.03552 -12.97399 -12.88132 -12.64563 -12.50374 -12.30690 -12.17573 -11.92893 -11.64314 -11.15393 -10.94501 -10.79208 -10.57087 -9.88187 -8.02837 -6.25179 -0.80902 1.37657 1.41591 1.44941 1.50187 2.42328 2.48185 2.81999 3.15220 3.25885 3.41055 3.74581 3.96639 4.32822 4.45337 4.51411 4.62104 4.75054 4.75575 4.91810 4.98690 5.02234 5.15454 5.19719 5.32312 5.52709 5.70558 6.12836 6.34368 6.61520 7.04421 7.50748 8.97318 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.010070 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.756190 B = 2779.923274 C = 3301.505239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.210 3.790 3 C -0.549 4.549 4 H 0.058 0.942 5 C 0.032 3.968 6 N -0.887 5.887 7 Si 0.939 3.061 8 H -0.262 1.262 9 H -0.279 1.279 10 H -0.289 1.289 11 C -0.138 4.138 12 C -0.114 4.114 13 C 0.028 3.972 14 C -0.551 4.551 15 S 2.370 3.630 16 O -0.974 6.974 17 O -0.970 6.970 18 C -0.522 4.522 19 O -0.360 6.360 20 H 0.055 0.945 21 H 0.042 0.958 22 H 0.033 0.967 23 H 0.256 0.744 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.186 0.814 30 H 0.196 0.804 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 -10.325 -5.774 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.173 3.827 3 C -0.587 4.587 4 H 0.076 0.924 5 C -0.171 4.171 6 N -0.524 5.524 7 Si 0.765 3.235 8 H -0.186 1.186 9 H -0.205 1.205 10 H -0.216 1.216 11 C -0.176 4.176 12 C -0.152 4.152 13 C -0.016 4.016 14 C -0.682 4.682 15 S 2.560 3.440 16 O -0.970 6.970 17 O -0.967 6.967 18 C -0.654 4.654 19 O -0.279 6.279 20 H 0.074 0.926 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.108 0.892 28 H 0.149 0.851 29 H 0.204 0.796 30 H 0.213 0.787 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.079 -10.237 -4.377 11.857 hybrid contribution -0.475 1.597 -0.531 1.749 sum 3.604 -8.640 -4.908 10.570 Atomic orbital electron populations 1.21874 0.97463 0.98522 1.01401 1.19859 0.91102 0.90002 0.81701 1.21693 1.32418 0.96554 1.08005 0.92366 1.25715 0.94573 1.01573 0.95197 1.70083 1.35640 1.36082 1.10570 0.85816 0.78419 0.81288 0.77950 1.18618 1.20498 1.21563 1.23129 1.01279 0.95165 0.98036 1.23115 1.03014 0.97121 0.91976 1.24195 0.90631 0.88065 0.98744 1.31288 1.00850 1.14079 1.22016 1.10234 0.78461 0.76970 0.78376 1.93489 1.56761 1.59688 1.87108 1.93619 1.84958 1.63020 1.55144 1.31024 1.19953 1.05365 1.09010 1.88809 1.64574 1.40955 1.33577 0.92560 0.93851 0.94773 0.93435 0.90458 0.91518 0.86845 0.89207 0.85113 0.79627 0.78702 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.51 71.98 0.61 -5.62 16 2 C 0.21 9.75 0.82 -11.07 -0.01 9.74 16 3 C -0.55 -29.01 8.22 25.60 0.21 -28.80 16 4 H 0.06 3.00 7.52 -2.91 -0.02 2.98 16 5 C 0.03 1.77 5.26 84.65 0.45 2.22 16 6 N -0.89 -52.01 10.93 21.45 0.23 -51.78 16 7 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 8 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 C -0.14 -4.84 6.00 31.86 0.19 -4.65 16 12 C -0.11 -3.05 6.18 32.04 0.20 -2.86 16 13 C 0.03 0.92 0.87 -8.15 -0.01 0.91 16 14 C -0.55 -15.91 8.27 72.96 0.60 -15.30 16 15 S 2.37 73.81 6.81 -56.49 -0.38 73.42 16 16 O -0.97 -31.79 18.18 -127.71 -2.32 -34.12 16 17 O -0.97 -42.42 18.18 -127.71 -2.32 -44.74 16 18 C -0.52 -13.02 8.37 72.99 0.61 -12.41 16 19 O -0.36 -16.89 9.76 -148.98 -1.45 -18.34 16 20 H 0.06 3.00 6.04 -2.38 -0.01 2.99 16 21 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.08 2.46 7.82 -2.39 -0.02 2.44 16 25 H 0.07 2.33 7.66 -2.39 -0.02 2.31 16 26 H 0.11 2.13 7.94 -2.39 -0.02 2.11 16 27 H 0.09 2.17 8.13 -2.39 -0.02 2.15 16 28 H 0.13 4.48 8.14 -2.39 -0.02 4.46 16 29 H 0.19 3.51 7.99 -2.39 -0.02 3.49 16 30 H 0.20 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.15 3.81 8.14 -2.39 -0.02 3.79 16 Total: -1.00 -75.65 269.32 -0.24 -75.89 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.12 Total: 10.63 kcal Atomic # 6 Polarization: -59.63 SS G_CDS: 2.86 Total: -56.78 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.23 Total: -51.78 kcal Atomic # 8 Polarization: -91.10 SS G_CDS: -6.10 Total: -97.20 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 73.81 SS G_CDS: -0.38 Total: 73.42 kcal Total: -75.65 -0.24 -75.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.259 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds