Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99484 * 2 1 4 4 H 1.48506 * 109.46678 * 239.99717 * 3 2 1 5 5 H 1.48493 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47094 * 120.00339 * 3 2 1 7 7 C 1.37873 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99883 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00041 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47366 * 59.99423 * 9 7 2 11 11 C 1.53040 * 109.47188 * 180.02562 * 9 7 2 12 12 C 1.53141 * 109.37187 * 179.11438 * 11 9 7 13 13 C 1.53260 * 109.02190 * 301.59161 * 12 11 9 14 14 C 1.53144 * 108.87779 * 55.36549 * 13 12 11 15 15 C 1.52958 * 113.16771 * 74.93615 * 14 13 12 16 16 S 1.81434 * 89.86544 * 148.23541 * 15 14 13 17 17 O 1.42104 * 112.74869 * 223.34392 * 16 15 14 18 18 O 1.42094 * 112.83524 * 79.58528 * 16 15 14 19 19 C 1.52933 * 113.23145 * 175.48247 * 14 13 12 20 20 O 1.42952 * 112.20249 * 305.27202 * 14 13 12 21 21 H 0.96994 * 120.00446 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.48764 * 299.08023 * 11 9 7 23 23 H 1.09003 * 109.49183 * 59.13963 * 11 9 7 24 24 H 1.08997 * 109.54790 * 61.45959 * 12 11 9 25 25 H 1.09001 * 109.54657 * 181.73245 * 12 11 9 26 26 H 1.09005 * 109.57324 * 175.18027 * 13 12 11 27 27 H 1.08998 * 109.57247 * 295.55092 * 13 12 11 28 28 H 1.09001 * 113.15178 * 263.48368 * 15 14 13 29 29 H 1.08999 * 113.15601 * 32.97578 * 15 14 13 30 30 H 1.08996 * 113.15218 * 327.07950 * 19 14 13 31 31 H 1.08999 * 113.15189 * 96.57799 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 6 2.2457 -3.6623 0.0018 12 6 1.4779 -4.9871 0.0242 13 6 0.5843 -5.0257 1.2687 14 6 -0.3189 -3.7889 1.2687 15 6 -1.4634 -3.8796 0.2580 16 16 -2.5102 -2.8900 1.3611 17 8 -3.8334 -3.3977 1.4647 18 8 -2.2331 -1.4986 1.2828 19 6 -1.3321 -3.7819 2.4142 20 8 0.4283 -2.5744 1.1674 21 1 -0.4850 0.8400 -0.0004 22 1 2.8623 -3.6145 -0.8957 23 1 2.8820 -3.5958 0.8844 24 1 0.8606 -5.0660 -0.8707 25 1 2.1837 -5.8172 0.0562 26 1 -0.0297 -5.9261 1.2496 27 1 1.2054 -5.0241 2.1644 28 1 -1.2426 -3.3801 -0.6853 29 1 -1.8306 -4.8960 0.1164 30 1 -1.6739 -4.7794 2.6901 31 1 -1.0017 -3.2006 3.2751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725663175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = -89.021478 kcal Electronic energy + Delta-G solvation = -17251.468198 eV Core-core repulsion = 14433.413080 eV Total energy + Delta-G solvation = -2818.055118 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.07724 -36.51552 -35.30210 -34.29396 -32.79451 -32.00214 -28.35395 -26.24527 -25.25845 -22.33726 -20.99206 -18.73542 -17.99757 -16.69525 -15.81257 -15.78404 -15.59849 -14.93512 -14.57411 -14.35885 -13.65819 -13.29804 -12.74581 -12.35182 -12.26771 -12.01800 -11.84803 -11.45030 -11.35227 -11.03535 -10.88639 -10.82438 -10.42908 -10.33544 -10.24840 -9.82119 -9.64076 -9.61669 -8.90586 -8.47886 -8.05666 -5.90445 -4.07389 0.83771 2.64827 3.36093 3.42331 3.43376 4.25824 4.38167 4.48669 4.69671 5.03567 5.34244 5.42153 5.49733 5.54454 5.62688 5.78758 5.88493 5.96324 6.12203 6.20341 6.21352 6.40801 6.54597 6.76709 6.77893 6.82923 7.45013 7.94993 8.24780 8.67271 9.03543 9.61985 11.13423 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024058 B = 0.011179 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.594474 B = 2504.059438 C = 3432.765307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.079 3.921 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.221 3.779 10 H 0.019 0.981 11 C -0.145 4.145 12 C -0.122 4.122 13 C -0.113 4.113 14 C 0.134 3.866 15 C -0.628 4.628 16 S 2.403 3.597 17 O -0.959 6.959 18 O -0.850 6.850 19 C -0.597 4.597 20 O -0.326 6.326 21 H 0.266 0.734 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 -9.054 1.889 9.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.130 4.130 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.166 3.834 10 H 0.036 0.964 11 C -0.183 4.183 12 C -0.159 4.159 13 C -0.152 4.152 14 C 0.090 3.910 15 C -0.756 4.756 16 S 2.583 3.417 17 O -0.957 6.957 18 O -0.847 6.847 19 C -0.724 4.724 20 O -0.245 6.245 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.468 -8.004 2.042 8.959 hybrid contribution 1.437 -0.158 -0.144 1.453 sum -2.031 -8.162 1.898 8.623 Atomic orbital electron populations 1.70008 1.05145 1.27129 1.43649 1.25118 0.94915 0.99004 0.94006 0.86771 0.79738 0.83544 0.78513 1.20342 1.21200 1.20244 1.20818 0.92514 0.89350 1.55196 0.91915 1.19803 0.86782 0.92481 0.84320 0.96374 1.22245 0.99661 0.95030 1.01398 1.21640 0.98308 0.98511 0.97478 1.21801 0.98105 0.96128 0.99154 1.20734 0.90312 0.91009 0.88909 1.31513 1.14351 1.14543 1.15217 1.08665 0.74474 0.77116 0.81456 1.93560 1.35348 1.82815 1.83928 1.93904 1.85573 1.23914 1.81348 1.31016 1.15270 1.14160 1.11977 1.88580 1.58319 1.30597 1.47033 0.92382 0.92205 0.92377 0.92338 0.92919 0.91969 0.91250 0.85178 0.85157 0.84662 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.78 12.40 55.43 0.69 -23.10 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.54 -14.83 8.79 -34.44 -0.30 -15.13 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.22 5.41 2.37 -27.86 -0.07 5.34 16 10 H 0.02 0.48 6.96 -51.93 -0.36 0.12 16 11 C -0.15 -2.94 5.31 -26.64 -0.14 -3.08 16 12 C -0.12 -2.01 5.92 -26.52 -0.16 -2.17 16 13 C -0.11 -1.79 5.26 -26.52 -0.14 -1.93 16 14 C 0.13 2.46 0.95 -90.60 -0.09 2.38 16 15 C -0.63 -10.28 6.86 37.14 0.25 -10.03 16 16 S 2.40 41.11 7.48 -107.50 -0.80 40.30 16 17 O -0.96 -17.36 18.18 -57.31 -1.04 -18.41 16 18 O -0.85 -18.94 17.23 -61.23 -1.06 -20.00 16 19 C -0.60 -9.10 7.31 37.12 0.27 -8.82 16 20 O -0.33 -7.81 8.86 -40.19 -0.36 -8.16 16 21 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.13 2.33 6.97 -51.93 -0.36 1.96 16 29 H 0.13 1.67 8.08 -51.93 -0.42 1.25 16 30 H 0.14 1.59 8.12 -51.93 -0.42 1.17 16 31 H 0.13 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 266.16 15.07 4.01 4.01 Total: -1.00 -33.34 266.16 -8.10 -41.44 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.05 Total: -0.98 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: -0.46 Total: -31.34 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.69 Total: -23.10 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.45 Total: -46.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 41.11 SS G_CDS: -0.80 Total: 40.30 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.34 -8.10 -41.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725663175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.585 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds