Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99484 * 2 1 4 4 H 1.48506 * 109.46678 * 239.99717 * 3 2 1 5 5 H 1.48493 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47094 * 120.00339 * 3 2 1 7 7 C 1.37873 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99883 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00041 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47366 * 59.99423 * 9 7 2 11 11 C 1.53040 * 109.47188 * 180.02562 * 9 7 2 12 12 C 1.53141 * 109.37187 * 179.11438 * 11 9 7 13 13 C 1.53260 * 109.02190 * 301.59161 * 12 11 9 14 14 C 1.53144 * 108.87779 * 55.36549 * 13 12 11 15 15 C 1.52958 * 113.16771 * 74.93615 * 14 13 12 16 16 S 1.81434 * 89.86544 * 148.23541 * 15 14 13 17 17 O 1.42104 * 112.74869 * 223.34392 * 16 15 14 18 18 O 1.42094 * 112.83524 * 79.58528 * 16 15 14 19 19 C 1.52933 * 113.23145 * 175.48247 * 14 13 12 20 20 O 1.42952 * 112.20249 * 305.27202 * 14 13 12 21 21 H 0.96994 * 120.00446 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.48764 * 299.08023 * 11 9 7 23 23 H 1.09003 * 109.49183 * 59.13963 * 11 9 7 24 24 H 1.08997 * 109.54790 * 61.45959 * 12 11 9 25 25 H 1.09001 * 109.54657 * 181.73245 * 12 11 9 26 26 H 1.09005 * 109.57324 * 175.18027 * 13 12 11 27 27 H 1.08998 * 109.57247 * 295.55092 * 13 12 11 28 28 H 1.09001 * 113.15178 * 263.48368 * 15 14 13 29 29 H 1.08999 * 113.15601 * 32.97578 * 15 14 13 30 30 H 1.08996 * 113.15218 * 327.07950 * 19 14 13 31 31 H 1.08999 * 113.15189 * 96.57799 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 6 2.2457 -3.6623 0.0018 12 6 1.4779 -4.9871 0.0242 13 6 0.5843 -5.0257 1.2687 14 6 -0.3189 -3.7889 1.2687 15 6 -1.4634 -3.8796 0.2580 16 16 -2.5102 -2.8900 1.3611 17 8 -3.8334 -3.3977 1.4647 18 8 -2.2331 -1.4986 1.2828 19 6 -1.3321 -3.7819 2.4142 20 8 0.4283 -2.5744 1.1674 21 1 -0.4850 0.8400 -0.0004 22 1 2.8623 -3.6145 -0.8957 23 1 2.8820 -3.5958 0.8844 24 1 0.8606 -5.0660 -0.8707 25 1 2.1837 -5.8172 0.0562 26 1 -0.0297 -5.9261 1.2496 27 1 1.2054 -5.0241 2.1644 28 1 -1.2426 -3.3801 -0.6853 29 1 -1.8306 -4.8960 0.1164 30 1 -1.6739 -4.7794 2.6901 31 1 -1.0017 -3.2006 3.2751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725663175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = -114.238111 kcal Electronic energy + Delta-G solvation = -17252.561674 eV Core-core repulsion = 14433.413080 eV Total energy + Delta-G solvation = -2819.148594 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.58312 -37.96366 -36.79472 -35.92567 -34.31228 -33.92962 -30.01116 -27.55135 -26.99843 -23.97780 -22.55681 -20.20062 -19.40030 -18.62621 -17.28665 -17.18253 -17.02747 -16.57806 -16.31961 -15.96617 -15.11593 -14.86399 -14.24068 -13.98745 -13.66417 -13.46398 -13.22875 -12.94196 -12.86142 -12.80232 -12.69009 -12.49912 -12.14390 -11.96264 -11.70003 -11.42553 -11.12962 -11.00031 -10.78532 -10.43618 -9.74790 -7.98584 -6.21650 -0.52781 1.32854 1.43447 1.45247 1.52614 2.46496 2.85251 2.97344 3.37340 3.37821 3.71295 4.08678 4.12761 4.26317 4.40103 4.44793 4.51370 4.59426 4.78138 4.84225 4.98286 5.07486 5.17645 5.24826 5.28554 5.35835 5.63759 5.86296 6.28802 6.72639 7.16556 7.51325 9.02695 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024058 B = 0.011179 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.594474 B = 2504.059438 C = 3432.765307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.030 3.970 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.566 4.566 8 H 0.059 0.941 9 C 0.220 3.780 10 H -0.008 1.008 11 C -0.141 4.141 12 C -0.118 4.118 13 C -0.109 4.109 14 C 0.107 3.893 15 C -0.615 4.615 16 S 2.405 3.595 17 O -0.972 6.972 18 O -0.914 6.914 19 C -0.568 4.568 20 O -0.360 6.360 21 H 0.259 0.741 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.176 0.824 30 H 0.185 0.815 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 -11.560 2.536 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.603 4.603 8 H 0.077 0.923 9 C 0.164 3.836 10 H 0.010 0.990 11 C -0.179 4.179 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.063 3.937 15 C -0.744 4.744 16 S 2.590 3.410 17 O -0.969 6.969 18 O -0.911 6.911 19 C -0.698 4.698 20 O -0.280 6.280 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.194 0.806 30 H 0.202 0.798 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.110 -10.494 2.680 11.268 hybrid contribution 1.322 0.511 -0.335 1.456 sum -1.788 -9.983 2.345 10.410 Atomic orbital electron populations 1.70171 1.06309 1.27169 1.45106 1.25855 0.95715 1.02180 0.93933 0.85835 0.78536 0.79730 0.78767 1.19260 1.21279 1.19990 1.21259 0.92769 0.91298 1.55010 0.92275 1.19580 0.87225 0.93060 0.83689 0.99027 1.22125 0.98921 0.95853 1.01040 1.21635 0.98781 0.96924 0.98215 1.21864 0.98057 0.96114 0.98803 1.21209 0.91249 0.90260 0.90939 1.31526 1.12781 1.16548 1.13595 1.08296 0.74456 0.76096 0.82105 1.93533 1.36459 1.82466 1.84400 1.93835 1.86280 1.28106 1.82880 1.30924 1.12018 1.16223 1.10633 1.88427 1.59257 1.34086 1.46182 0.93151 0.92253 0.93031 0.91983 0.89768 0.87604 0.90922 0.87320 0.80639 0.79751 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.05 12.40 21.45 0.27 -50.79 16 2 C 0.03 1.68 5.40 84.65 0.46 2.14 16 3 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.57 -31.77 8.79 25.60 0.23 -31.54 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.22 10.91 2.37 29.86 0.07 10.99 16 10 H -0.01 -0.42 6.96 -2.39 -0.02 -0.43 16 11 C -0.14 -5.57 5.31 30.65 0.16 -5.41 16 12 C -0.12 -3.48 5.92 30.73 0.18 -3.30 16 13 C -0.11 -2.98 5.26 30.73 0.16 -2.81 16 14 C 0.11 3.65 0.95 -10.78 -0.01 3.64 16 15 C -0.61 -18.82 6.86 71.97 0.49 -18.33 16 16 S 2.41 80.64 7.48 -56.49 -0.42 80.22 16 17 O -0.97 -33.85 18.18 -127.87 -2.32 -36.18 16 18 O -0.91 -42.33 17.23 -124.12 -2.14 -44.47 16 19 C -0.57 -15.44 7.31 71.96 0.53 -14.91 16 20 O -0.36 -17.27 8.86 -144.24 -1.28 -18.54 16 21 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 22 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.06 1.79 8.01 -2.39 -0.02 1.77 16 25 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.11 2.02 8.08 -2.38 -0.02 2.00 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.11 3.89 6.97 -2.39 -0.02 3.88 16 29 H 0.18 3.66 8.08 -2.39 -0.02 3.64 16 30 H 0.18 3.20 8.12 -2.39 -0.02 3.18 16 31 H 0.13 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -74.87 266.16 -0.48 -75.36 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.12 Total: 7.24 kcal Atomic # 6 Polarization: -61.81 SS G_CDS: 2.27 Total: -59.54 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.27 Total: -50.79 kcal Atomic # 8 Polarization: -93.45 SS G_CDS: -5.74 Total: -99.19 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 80.64 SS G_CDS: -0.42 Total: 80.22 kcal Total: -74.87 -0.48 -75.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725663175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.883 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds