Wall clock time and date at job start Mon Mar 30 2020 03:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86807 * 119.99600 * 2 1 4 4 H 1.48503 * 109.47152 * 240.00078 * 3 2 1 5 5 H 1.48506 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47000 * 119.99890 * 3 2 1 7 7 C 1.38751 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99774 * 180.02562 * 7 2 1 9 9 O 1.34915 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.34307 * 116.99928 * 180.02562 * 9 7 2 11 11 O 1.21205 * 120.00141 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00081 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47335 * 179.97438 * 12 10 9 14 14 N 1.39873 * 125.45912 * 89.97296 * 13 12 10 15 15 C 1.30244 * 110.08629 * 180.02562 * 14 13 12 16 16 C 1.45928 * 107.78343 * 0.02562 * 15 14 13 17 17 C 1.39945 * 134.02815 * 179.97438 * 16 15 14 18 18 C 1.36468 * 119.63584 * 180.02562 * 17 16 15 19 19 C 1.38974 * 120.62492 * 0.02819 * 18 17 16 20 20 C 1.36584 * 120.81866 * 359.90915 * 19 18 17 21 21 C 1.37038 * 125.46287 * 269.99465 * 13 12 10 22 22 H 0.96993 * 120.00666 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47551 * 59.98733 * 12 10 9 24 24 H 1.09003 * 109.46850 * 299.99394 * 12 10 9 25 25 H 1.08000 * 126.10776 * 179.73181 * 15 14 13 26 26 H 1.07996 * 120.18613 * 0.05280 * 17 16 15 27 27 H 1.07993 * 119.68756 * 179.97438 * 18 17 16 28 28 H 1.08001 * 119.58632 * 179.97438 * 19 18 17 29 29 H 1.08000 * 120.07672 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 3.1021 1.6966 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6966 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2014 0.0010 9 8 1.3338 -2.3700 0.0005 10 6 2.0654 -3.4963 0.0016 11 8 3.2758 -3.4328 0.0020 12 6 1.3813 -4.8392 0.0023 13 7 2.3904 -5.9012 0.0028 14 7 2.9496 -6.4886 1.1424 15 6 3.8149 -7.3990 0.7975 16 6 3.8574 -7.4439 -0.6604 17 6 4.5787 -8.2023 -1.5895 18 6 4.3840 -7.9971 -2.9246 19 6 3.4772 -7.0424 -3.3693 20 6 2.7607 -6.2910 -2.4819 21 6 2.9379 -6.4783 -1.1131 22 1 -0.4851 0.8399 -0.0004 23 1 0.7587 -4.9303 -0.8878 24 1 0.7583 -4.9291 0.8922 25 1 4.4002 -8.0081 1.4704 26 1 5.2852 -8.9460 -1.2519 27 1 4.9404 -8.5815 -3.6422 28 1 3.3367 -6.8937 -4.4297 29 1 2.0589 -5.5526 -2.8407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730637862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:40 Heat of formation + Delta-G solvation = 16.249945 kcal Electronic energy + Delta-G solvation = -16827.588867 eV Core-core repulsion = 13910.947459 eV Total energy + Delta-G solvation = -2916.641407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09611 -38.98672 -37.05651 -35.32368 -33.19650 -32.21146 -30.41868 -29.67669 -27.37648 -25.11876 -22.92626 -21.90081 -21.38443 -19.76059 -17.83723 -16.96563 -16.87252 -16.74509 -15.15859 -14.95374 -14.93003 -14.46717 -14.17546 -13.91648 -13.73406 -13.34615 -12.41311 -12.30001 -11.82905 -11.75767 -11.60441 -11.17521 -10.95525 -10.60833 -10.50418 -10.44137 -10.07348 -9.90059 -9.15068 -8.63954 -8.53549 -7.73706 -6.47416 -4.15890 1.09400 1.64046 2.44925 2.72761 3.07058 3.15840 3.20040 3.39578 3.86259 3.96183 4.46526 4.60952 4.72110 4.91821 5.04117 5.07780 5.29350 5.42963 5.50689 5.56086 5.73747 5.87739 6.10816 6.45714 6.49646 6.60061 6.62881 6.95050 7.19957 7.32628 7.82430 7.87674 8.60910 9.00741 9.72674 10.69896 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.005341 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.066001 B = 5241.492251 C = 5480.609847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.044 3.956 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.383 4.383 8 H 0.095 0.905 9 O -0.210 6.210 10 C 0.375 3.625 11 O -0.539 6.539 12 C 0.157 3.843 13 N -0.382 5.382 14 N -0.238 5.238 15 C 0.065 3.935 16 C -0.182 4.182 17 C -0.043 4.043 18 C -0.166 4.166 19 C -0.075 4.075 20 C -0.134 4.134 21 C 0.141 3.859 22 H 0.271 0.729 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.195 0.805 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -14.418 -4.216 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.160 4.160 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.117 6.117 10 C 0.219 3.781 11 O -0.435 6.435 12 C 0.034 3.966 13 N -0.169 5.169 14 N -0.049 5.049 15 C -0.133 4.133 16 C -0.190 4.190 17 C -0.063 4.063 18 C -0.186 4.186 19 C -0.095 4.095 20 C -0.156 4.156 21 C 0.026 3.974 22 H 0.081 0.919 23 H 0.138 0.862 24 H 0.142 0.858 25 H 0.212 0.788 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.492 -13.467 -3.200 14.275 hybrid contribution 0.789 0.610 -0.604 1.166 sum 4.281 -12.857 -3.804 14.075 Atomic orbital electron populations 1.69970 1.05985 1.27973 1.46134 1.25338 0.95848 0.98832 0.96010 0.85721 0.78647 0.79255 0.79433 1.19427 1.20249 1.19420 1.21177 0.92393 0.79569 1.52739 0.88736 1.83851 1.39167 1.13171 1.75515 1.23347 0.87230 0.87394 0.80082 1.90611 1.15379 1.87658 1.49869 1.20757 0.87516 0.81635 1.06696 1.47782 1.36351 1.31582 1.01198 1.76590 1.10568 1.08651 1.09106 1.25009 0.97885 0.97448 0.92949 1.19906 1.03129 1.02518 0.93479 1.20274 0.96834 0.97154 0.92040 1.20597 1.01503 1.01097 0.95381 1.20668 0.94980 0.94690 0.99197 1.19907 1.03805 1.02784 0.89094 1.18807 0.94830 0.94171 0.89558 0.91885 0.86217 0.85835 0.78830 0.85731 0.85945 0.85565 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.11 13.67 55.48 0.76 -24.36 15 2 C 0.04 1.24 5.49 -17.53 -0.10 1.15 15 3 Si 0.95 21.42 29.55 -169.99 -5.02 16.39 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.38 -11.40 9.64 30.92 0.30 -11.10 15 8 H 0.10 2.87 6.86 -52.48 -0.36 2.51 15 9 O -0.21 -6.00 9.75 -20.68 -0.20 -6.20 15 10 C 0.38 9.42 7.97 36.01 0.29 9.71 15 11 O -0.54 -15.23 15.67 -19.05 -0.30 -15.53 15 12 C 0.16 2.96 6.96 -5.19 -0.04 2.92 15 13 N -0.38 -7.24 3.14 -59.88 -0.19 -7.43 15 14 N -0.24 -4.38 12.40 31.87 0.40 -3.98 15 15 C 0.06 0.96 12.28 -15.15 -0.19 0.78 15 16 C -0.18 -2.80 6.37 -105.21 -0.67 -3.47 15 17 C -0.04 -0.52 10.07 -39.58 -0.40 -0.92 15 18 C -0.17 -1.90 9.97 -39.95 -0.40 -2.30 15 19 C -0.07 -0.93 9.96 -39.91 -0.40 -1.33 15 20 C -0.13 -2.05 9.97 -39.79 -0.40 -2.45 15 21 C 0.14 2.47 6.87 -84.17 -0.58 1.89 15 22 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 23 H 0.12 1.86 8.14 -51.93 -0.42 1.44 15 24 H 0.12 2.07 8.14 -51.93 -0.42 1.65 15 25 H 0.20 1.95 8.06 -52.49 -0.42 1.52 15 26 H 0.12 1.11 8.06 -52.49 -0.42 0.69 15 27 H 0.12 1.04 8.06 -52.49 -0.42 0.61 15 28 H 0.13 1.21 8.06 -52.49 -0.42 0.79 15 29 H 0.12 1.80 8.06 -52.49 -0.42 1.37 15 LS Contribution 272.77 15.07 4.11 4.11 Total: -1.00 -35.92 272.77 -5.47 -41.39 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -2.45 Total: 0.72 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.57 Total: -5.13 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.97 Total: -35.76 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.50 Total: -21.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -35.92 -5.47 -41.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730637862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.639 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds