Wall clock time and date at job start Mon Mar 30 2020 03:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86807 * 119.99600 * 2 1 4 4 H 1.48503 * 109.47152 * 240.00078 * 3 2 1 5 5 H 1.48506 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47000 * 119.99890 * 3 2 1 7 7 C 1.38751 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99774 * 180.02562 * 7 2 1 9 9 O 1.34915 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.34307 * 116.99928 * 180.02562 * 9 7 2 11 11 O 1.21205 * 120.00141 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00081 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47335 * 179.97438 * 12 10 9 14 14 N 1.39873 * 125.45912 * 89.97296 * 13 12 10 15 15 C 1.30244 * 110.08629 * 180.02562 * 14 13 12 16 16 C 1.45928 * 107.78343 * 0.02562 * 15 14 13 17 17 C 1.39945 * 134.02815 * 179.97438 * 16 15 14 18 18 C 1.36468 * 119.63584 * 180.02562 * 17 16 15 19 19 C 1.38974 * 120.62492 * 0.02819 * 18 17 16 20 20 C 1.36584 * 120.81866 * 359.90915 * 19 18 17 21 21 C 1.37038 * 125.46287 * 269.99465 * 13 12 10 22 22 H 0.96993 * 120.00666 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47551 * 59.98733 * 12 10 9 24 24 H 1.09003 * 109.46850 * 299.99394 * 12 10 9 25 25 H 1.08000 * 126.10776 * 179.73181 * 15 14 13 26 26 H 1.07996 * 120.18613 * 0.05280 * 17 16 15 27 27 H 1.07993 * 119.68756 * 179.97438 * 18 17 16 28 28 H 1.08001 * 119.58632 * 179.97438 * 19 18 17 29 29 H 1.08000 * 120.07672 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 3.1021 1.6966 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6966 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2014 0.0010 9 8 1.3338 -2.3700 0.0005 10 6 2.0654 -3.4963 0.0016 11 8 3.2758 -3.4328 0.0020 12 6 1.3813 -4.8392 0.0023 13 7 2.3904 -5.9012 0.0028 14 7 2.9496 -6.4886 1.1424 15 6 3.8149 -7.3990 0.7975 16 6 3.8574 -7.4439 -0.6604 17 6 4.5787 -8.2023 -1.5895 18 6 4.3840 -7.9971 -2.9246 19 6 3.4772 -7.0424 -3.3693 20 6 2.7607 -6.2910 -2.4819 21 6 2.9379 -6.4783 -1.1131 22 1 -0.4851 0.8399 -0.0004 23 1 0.7587 -4.9303 -0.8878 24 1 0.7583 -4.9291 0.8922 25 1 4.4002 -8.0081 1.4704 26 1 5.2852 -8.9460 -1.2519 27 1 4.9404 -8.5815 -3.6422 28 1 3.3367 -6.8937 -4.4297 29 1 2.0589 -5.5526 -2.8407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730637862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:40 Heat of formation + Delta-G solvation = -7.452274 kcal Electronic energy + Delta-G solvation = -16828.616672 eV Core-core repulsion = 13910.947459 eV Total energy + Delta-G solvation = -2917.669212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.29506 -41.00600 -38.17081 -37.36624 -34.61038 -34.34371 -31.57753 -30.78507 -28.89867 -27.12604 -23.99666 -23.22481 -22.78575 -21.25295 -20.00116 -18.84049 -18.19516 -17.88211 -16.87573 -16.81857 -16.27780 -16.09457 -15.57313 -15.26660 -14.93795 -14.36623 -14.31862 -13.81495 -13.69483 -13.07696 -12.81894 -12.76787 -12.44664 -12.21987 -12.14303 -11.96320 -11.77544 -11.50399 -10.95058 -10.77311 -9.64964 -8.91720 -8.60626 -6.42633 0.02504 0.55573 1.16436 1.20149 1.31956 1.46598 1.52605 1.57036 2.08351 2.63061 2.88718 2.91894 3.44742 3.61238 3.82910 4.02969 4.12210 4.22558 4.36194 4.49913 4.53463 4.72246 4.96531 5.06290 5.07817 5.45740 5.57703 5.61464 5.73667 5.86239 6.07075 6.51857 6.63072 6.82423 7.60509 8.58186 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.005341 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.066001 B = 5241.492251 C = 5480.609847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.001 3.999 3 Si 1.017 2.983 4 H -0.262 1.262 5 H -0.255 1.255 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.077 0.923 9 O -0.235 6.235 10 C 0.377 3.623 11 O -0.575 6.575 12 C 0.169 3.831 13 N -0.405 5.405 14 N -0.288 5.288 15 C 0.082 3.918 16 C -0.202 4.202 17 C -0.037 4.037 18 C -0.163 4.163 19 C -0.065 4.065 20 C -0.168 4.168 21 C 0.107 3.893 22 H 0.282 0.718 23 H 0.149 0.851 24 H 0.141 0.859 25 H 0.239 0.761 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.156 0.844 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -15.661 -5.247 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.200 4.200 3 Si 0.835 3.165 4 H -0.186 1.186 5 H -0.178 1.178 6 H -0.189 1.189 7 C -0.501 4.501 8 H 0.094 0.906 9 O -0.143 6.143 10 C 0.223 3.777 11 O -0.473 6.473 12 C 0.045 3.955 13 N -0.193 5.193 14 N -0.099 5.099 15 C -0.115 4.115 16 C -0.210 4.210 17 C -0.057 4.057 18 C -0.182 4.182 19 C -0.086 4.086 20 C -0.190 4.190 21 C -0.006 4.006 22 H 0.091 0.909 23 H 0.166 0.834 24 H 0.159 0.841 25 H 0.255 0.745 26 H 0.181 0.819 27 H 0.180 0.820 28 H 0.174 0.826 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.818 -14.746 -4.242 16.083 hybrid contribution 0.470 0.790 -0.370 0.991 sum 5.288 -13.956 -4.613 15.621 Atomic orbital electron populations 1.70040 1.07510 1.29731 1.46073 1.26519 0.96934 1.02145 0.94373 0.84709 0.77706 0.74346 0.79726 1.18599 1.17818 1.18863 1.21333 0.92031 0.81042 1.55658 0.90562 1.83874 1.39937 1.13919 1.76534 1.24691 0.87120 0.88576 0.77356 1.90559 1.17251 1.88367 1.51089 1.20807 0.87557 0.78291 1.08809 1.47777 1.37518 1.32018 1.01996 1.76526 1.12804 1.10755 1.09834 1.25836 0.96081 0.95907 0.93722 1.20334 1.03509 1.02957 0.94173 1.20783 0.96264 0.96792 0.91845 1.21119 1.00666 1.00400 0.95989 1.21134 0.93644 0.93494 1.00285 1.20139 1.05501 1.04360 0.89017 1.19345 0.95979 0.95263 0.90055 0.90879 0.83391 0.84118 0.74486 0.81856 0.81995 0.82649 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.87 13.67 21.62 0.30 -52.57 15 2 C 0.00 0.08 5.49 84.87 0.47 0.55 15 3 Si 1.02 43.93 29.55 68.60 2.03 45.95 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.25 -9.98 7.11 99.48 0.71 -9.27 15 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 15 7 C -0.43 -26.39 9.64 67.94 0.66 -25.74 15 8 H 0.08 4.88 6.86 -2.91 -0.02 4.86 15 9 O -0.24 -14.06 9.75 14.96 0.15 -13.91 15 10 C 0.38 19.82 7.97 71.24 0.57 20.39 15 11 O -0.58 -34.10 15.67 20.79 0.33 -33.77 15 12 C 0.17 6.60 6.96 85.63 0.60 7.19 15 13 N -0.40 -15.72 3.14 -343.36 -1.08 -16.80 15 14 N -0.29 -10.72 12.40 -53.09 -0.66 -11.38 15 15 C 0.08 2.34 12.28 86.92 1.07 3.40 15 16 C -0.20 -5.90 6.37 -20.24 -0.13 -6.03 15 17 C -0.04 -0.76 10.07 22.27 0.22 -0.54 15 18 C -0.16 -3.08 9.97 22.03 0.22 -2.86 15 19 C -0.07 -1.47 9.96 22.06 0.22 -1.25 15 20 C -0.17 -5.12 9.97 22.14 0.22 -4.90 15 21 C 0.11 3.75 6.87 39.21 0.27 4.02 15 22 H 0.28 15.00 8.31 -92.71 -0.77 14.23 15 23 H 0.15 4.77 8.14 -2.39 -0.02 4.75 15 24 H 0.14 4.89 8.14 -2.39 -0.02 4.87 15 25 H 0.24 4.08 8.06 -2.91 -0.02 4.06 15 26 H 0.16 2.07 8.06 -2.91 -0.02 2.05 15 27 H 0.16 1.81 8.06 -2.91 -0.02 1.79 15 28 H 0.16 2.49 8.06 -2.91 -0.02 2.47 15 29 H 0.12 3.56 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -82.13 272.77 6.61 -75.51 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.17 Total: 12.74 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 4.38 Total: -5.77 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.44 Total: -80.75 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: 0.47 Total: -47.69 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -82.13 6.61 -75.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730637862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.062 kcal (2) G-P(sol) polarization free energy of solvation -82.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds