Wall clock time and date at job start Mon Mar 30 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39526 * 119.57978 * 202.04268 * 3 2 1 5 5 C 1.38244 * 119.19721 * 180.02562 * 4 3 2 6 6 C 1.40055 * 118.37644 * 359.97438 * 5 4 3 7 7 C 1.47768 * 120.46024 * 180.02562 * 6 5 4 8 8 O 1.21467 * 119.99721 * 359.97127 * 7 6 5 9 9 O 1.34706 * 120.00602 * 179.97438 * 7 6 5 10 10 C 1.45196 * 117.00346 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46945 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46857 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99773 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00214 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99566 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47035 * 60.00391 * 16 14 12 18 18 H 1.48504 * 109.46515 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47522 * 299.99753 * 16 14 12 20 20 C 1.39755 * 119.08938 * 359.97438 * 6 5 4 21 21 N 1.31424 * 120.71460 * 0.02900 * 20 6 5 22 22 H 1.08004 * 120.40295 * 0.02562 * 4 3 2 23 23 H 1.08001 * 120.81385 * 179.97438 * 5 4 3 24 24 H 1.08999 * 109.46704 * 299.99772 * 10 9 7 25 25 H 1.08995 * 109.47434 * 59.99721 * 10 9 7 26 26 H 1.08994 * 109.47107 * 299.99438 * 11 10 9 27 27 H 1.09003 * 109.46832 * 60.00092 * 11 10 9 28 28 H 0.97000 * 120.00180 * 180.02562 * 15 14 12 29 29 H 1.07997 * 119.64570 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2562 1.1257 0.4554 5 6 4.6386 1.1179 0.4514 6 6 5.2965 -0.0281 -0.0127 7 6 6.7728 -0.0864 -0.0365 8 8 7.4244 0.8641 0.3476 9 8 7.3961 -1.1934 -0.4843 10 6 8.8480 -1.1799 -0.4798 11 6 9.3721 -2.5128 -1.0180 12 6 10.8790 -2.4986 -1.0139 13 1 11.4099 -1.6263 -0.6621 14 6 11.5800 -3.5992 -1.4592 15 7 10.9337 -4.6611 -1.8880 16 14 13.4480 -3.5812 -1.4548 17 1 13.9378 -3.3813 -0.0672 18 1 13.9566 -4.8750 -1.9771 19 1 13.9345 -2.4736 -2.3159 20 6 4.5375 -1.1163 -0.4519 21 7 3.2242 -1.0702 -0.4326 22 1 2.7155 1.9921 0.8067 23 1 5.1976 1.9746 0.7977 24 1 9.2057 -0.3667 -1.1113 25 1 9.2069 -1.0336 0.5390 26 1 9.0144 -3.3257 -0.3861 27 1 9.0132 -2.6595 -2.0368 28 1 11.4268 -5.4356 -2.2010 29 1 5.0355 -2.0046 -0.8112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734600456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:29 Heat of formation + Delta-G solvation = -25.124067 kcal Electronic energy + Delta-G solvation = -15864.926166 eV Core-core repulsion = 12946.490648 eV Total energy + Delta-G solvation = -2918.435519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.04062 -39.68980 -36.94239 -36.33086 -33.45334 -33.15057 -32.33078 -30.31389 -26.54198 -24.83357 -24.14190 -21.78645 -20.87224 -19.87265 -18.14720 -17.23698 -16.50822 -16.19246 -15.84541 -15.26972 -15.06356 -14.65851 -14.32921 -13.69550 -13.60380 -13.20300 -13.13557 -13.02648 -12.75576 -12.40446 -11.36378 -11.17419 -10.90314 -10.82551 -10.60252 -10.48767 -10.08117 -9.80807 -9.72869 -9.64776 -9.38432 -8.49227 -6.15334 -4.20340 -0.26294 0.69721 2.03621 2.09565 2.76890 2.80084 3.05400 3.27082 3.31757 3.34442 3.48992 4.16399 4.28632 4.35405 4.40725 4.56658 4.79905 5.12874 5.21481 5.40183 5.61938 5.92323 5.95496 5.97321 6.52009 6.71752 6.90428 7.21744 7.46309 7.54045 7.76935 7.94398 8.16591 8.84770 9.44558 10.95909 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.054724 B = 0.003628 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.540328 B = 7715.516799 C = 8206.611246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C 0.266 3.734 3 C 0.215 3.785 4 C -0.131 4.131 5 C -0.012 4.012 6 C -0.142 4.142 7 C 0.504 3.496 8 O -0.504 6.504 9 O -0.348 6.348 10 C 0.076 3.924 11 C 0.024 3.976 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.169 3.831 21 N -0.457 5.457 22 H 0.155 0.845 23 H 0.162 0.838 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 10.191 4.126 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.059 5.059 2 C -0.051 4.051 3 C 0.077 3.923 4 C -0.154 4.154 5 C -0.038 4.038 6 C -0.146 4.146 7 C 0.347 3.653 8 O -0.394 6.394 9 O -0.264 6.264 10 C 0.004 3.996 11 C -0.013 4.013 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.010 3.990 21 N -0.167 5.167 22 H 0.173 0.827 23 H 0.180 0.820 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.816 9.526 3.857 18.032 hybrid contribution 2.089 0.666 0.268 2.209 sum -12.726 10.193 4.126 16.819 Atomic orbital electron populations 1.81267 1.11457 1.06613 1.06558 1.24947 0.91628 0.94046 0.94527 1.16601 0.86333 0.91592 0.97794 1.21971 0.94328 0.98801 1.00262 1.21758 0.93426 0.97187 0.91413 1.20616 0.92359 0.97179 1.04473 1.20728 0.87919 0.81674 0.75025 1.90830 1.67251 1.37135 1.44187 1.86563 1.26871 1.37953 1.75034 1.23776 0.71180 1.03046 1.01595 1.19192 0.95507 0.89147 0.97445 1.20918 0.90316 1.01272 1.44281 0.92263 1.24971 0.98970 0.95260 0.94839 1.69950 1.35898 1.04696 1.42121 0.86526 0.84810 0.77371 0.78560 1.20059 1.21103 1.20054 1.23394 0.87429 0.97748 0.90462 1.67700 1.10333 1.24957 1.13695 0.82696 0.82035 0.91920 0.91924 0.95186 0.95185 0.92582 0.79324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.51 18.54 41.83 0.78 -3.74 15 2 C 0.27 2.67 15.52 -22.48 -0.35 2.32 15 3 C 0.21 1.96 6.58 -85.03 -0.56 1.40 15 4 C -0.13 -0.89 9.77 -39.10 -0.38 -1.27 15 5 C -0.01 -0.10 9.70 -38.90 -0.38 -0.48 15 6 C -0.14 -1.58 5.89 -104.75 -0.62 -2.19 15 7 C 0.50 7.55 7.91 34.63 0.27 7.83 15 8 O -0.50 -8.63 16.20 -19.24 -0.31 -8.94 15 9 O -0.35 -6.04 9.49 -40.51 -0.38 -6.42 15 10 C 0.08 1.54 5.41 37.16 0.20 1.74 15 11 C 0.02 0.59 5.35 -27.88 -0.15 0.44 15 12 C -0.53 -14.24 9.11 -34.44 -0.31 -14.56 15 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 15 N -0.89 -25.47 13.29 55.43 0.74 -24.73 15 16 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 20 C 0.17 1.80 10.78 -17.16 -0.18 1.62 15 21 N -0.46 -4.96 10.26 -10.84 -0.11 -5.07 15 22 H 0.16 0.56 8.06 -52.48 -0.42 0.13 15 23 H 0.16 1.13 7.73 -52.49 -0.41 0.72 15 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 29 H 0.19 1.89 7.61 -52.49 -0.40 1.49 15 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -30.53 282.13 -5.08 -35.61 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: -2.46 Total: -5.13 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.56 Total: -1.54 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 1.40 Total: -33.54 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.70 Total: -15.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.53 -5.08 -35.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734600456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.483 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds