Wall clock time and date at job start Mon Mar 30 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39526 * 119.57978 * 202.04268 * 3 2 1 5 5 C 1.38244 * 119.19721 * 180.02562 * 4 3 2 6 6 C 1.40055 * 118.37644 * 359.97438 * 5 4 3 7 7 C 1.47768 * 120.46024 * 180.02562 * 6 5 4 8 8 O 1.21467 * 119.99721 * 359.97127 * 7 6 5 9 9 O 1.34706 * 120.00602 * 179.97438 * 7 6 5 10 10 C 1.45196 * 117.00346 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46945 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46857 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99773 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00214 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99566 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47035 * 60.00391 * 16 14 12 18 18 H 1.48504 * 109.46515 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47522 * 299.99753 * 16 14 12 20 20 C 1.39755 * 119.08938 * 359.97438 * 6 5 4 21 21 N 1.31424 * 120.71460 * 0.02900 * 20 6 5 22 22 H 1.08004 * 120.40295 * 0.02562 * 4 3 2 23 23 H 1.08001 * 120.81385 * 179.97438 * 5 4 3 24 24 H 1.08999 * 109.46704 * 299.99772 * 10 9 7 25 25 H 1.08995 * 109.47434 * 59.99721 * 10 9 7 26 26 H 1.08994 * 109.47107 * 299.99438 * 11 10 9 27 27 H 1.09003 * 109.46832 * 60.00092 * 11 10 9 28 28 H 0.97000 * 120.00180 * 180.02562 * 15 14 12 29 29 H 1.07997 * 119.64570 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2562 1.1257 0.4554 5 6 4.6386 1.1179 0.4514 6 6 5.2965 -0.0281 -0.0127 7 6 6.7728 -0.0864 -0.0365 8 8 7.4244 0.8641 0.3476 9 8 7.3961 -1.1934 -0.4843 10 6 8.8480 -1.1799 -0.4798 11 6 9.3721 -2.5128 -1.0180 12 6 10.8790 -2.4986 -1.0139 13 1 11.4099 -1.6263 -0.6621 14 6 11.5800 -3.5992 -1.4592 15 7 10.9337 -4.6611 -1.8880 16 14 13.4480 -3.5812 -1.4548 17 1 13.9378 -3.3813 -0.0672 18 1 13.9566 -4.8750 -1.9771 19 1 13.9345 -2.4736 -2.3159 20 6 4.5375 -1.1163 -0.4519 21 7 3.2242 -1.0702 -0.4326 22 1 2.7155 1.9921 0.8067 23 1 5.1976 1.9746 0.7977 24 1 9.2057 -0.3667 -1.1113 25 1 9.2069 -1.0336 0.5390 26 1 9.0144 -3.3257 -0.3861 27 1 9.0132 -2.6595 -2.0368 28 1 11.4268 -5.4356 -2.2010 29 1 5.0355 -2.0046 -0.8112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734600456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:29 Heat of formation + Delta-G solvation = -43.324796 kcal Electronic energy + Delta-G solvation = -15865.715409 eV Core-core repulsion = 12946.490648 eV Total energy + Delta-G solvation = -2919.224762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.98139 -40.83925 -37.87534 -37.64319 -35.42197 -33.96583 -33.21487 -32.13409 -27.75817 -26.45075 -24.90672 -23.27679 -22.39335 -20.64363 -19.38960 -18.35653 -18.17365 -17.56024 -17.17476 -16.51008 -15.98558 -15.92066 -15.25402 -15.05968 -14.46665 -14.41624 -14.33270 -14.02333 -14.00976 -13.66094 -13.12218 -13.03082 -12.59068 -12.56259 -12.03001 -11.55798 -11.45685 -11.40923 -11.22450 -10.87776 -10.57145 -10.45719 -8.23566 -6.36226 -1.08487 0.00793 1.05846 1.28958 1.43513 1.47314 1.53315 1.60004 1.83706 2.25787 2.42801 2.69472 3.11451 3.39221 3.49055 3.63146 3.80893 3.85363 4.27672 4.28680 4.51412 4.65867 4.75483 4.90667 5.21635 5.25897 5.51091 5.52562 5.77125 6.10108 6.11314 6.43677 6.61523 6.77885 7.33559 8.88393 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.054724 B = 0.003628 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.540328 B = 7715.516799 C = 8206.611246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.286 3.714 3 C 0.211 3.789 4 C -0.102 4.102 5 C 0.002 3.998 6 C -0.154 4.154 7 C 0.507 3.493 8 O -0.526 6.526 9 O -0.355 6.355 10 C 0.092 3.908 11 C 0.029 3.971 12 C -0.550 4.550 13 H 0.066 0.934 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.170 3.830 21 N -0.478 5.478 22 H 0.198 0.802 23 H 0.181 0.819 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.267 0.733 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 11.934 4.830 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.031 4.031 3 C 0.074 3.926 4 C -0.124 4.124 5 C -0.023 4.023 6 C -0.158 4.158 7 C 0.352 3.648 8 O -0.416 6.416 9 O -0.272 6.272 10 C 0.019 3.981 11 C -0.009 4.009 12 C -0.588 4.588 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.565 5.565 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.191 1.191 20 C 0.010 3.990 21 N -0.188 5.188 22 H 0.215 0.785 23 H 0.199 0.801 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.933 11.286 4.568 19.267 hybrid contribution 1.991 0.160 0.064 1.998 sum -12.942 11.446 4.632 17.887 Atomic orbital electron populations 1.81297 1.12397 1.07655 1.07701 1.24967 0.91561 0.93068 0.93520 1.16745 0.85849 0.92076 0.97924 1.22304 0.93477 0.98879 0.97760 1.22011 0.93997 0.96435 0.89904 1.20420 0.89657 0.98877 1.06870 1.21278 0.89313 0.80392 0.73800 1.90817 1.68051 1.37520 1.45244 1.86539 1.25164 1.39598 1.75851 1.23240 0.73079 1.00419 1.01332 1.18999 0.94993 0.90914 0.95963 1.21366 0.91686 1.01643 1.44119 0.91536 1.25918 1.04156 0.94817 0.94302 1.70077 1.37914 1.05421 1.43066 0.85423 0.78582 0.77585 0.79001 1.19098 1.20783 1.19090 1.23275 0.87402 0.97716 0.90647 1.67643 1.10286 1.26188 1.14688 0.78519 0.80149 0.91665 0.91672 0.97282 0.97287 0.92445 0.79698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.19 18.54 19.00 0.35 -8.84 15 2 C 0.29 5.18 15.52 88.33 1.37 6.55 15 3 C 0.21 3.35 6.58 40.55 0.27 3.61 15 4 C -0.10 -0.98 9.77 22.58 0.22 -0.76 15 5 C 0.00 0.03 9.70 22.71 0.22 0.25 15 6 C -0.15 -3.19 5.89 -19.95 -0.12 -3.30 15 7 C 0.51 14.86 7.91 70.34 0.56 15.42 15 8 O -0.53 -17.40 16.20 19.94 0.32 -17.07 15 9 O -0.36 -12.43 9.49 -56.16 -0.53 -12.97 15 10 C 0.09 3.76 5.41 71.98 0.39 4.15 15 11 C 0.03 1.44 5.35 29.85 0.16 1.60 15 12 C -0.55 -29.88 9.11 25.60 0.23 -29.64 15 13 H 0.07 3.43 7.74 -2.91 -0.02 3.40 15 14 C 0.01 0.40 5.46 84.66 0.46 0.86 15 15 N -0.93 -53.98 13.29 21.45 0.28 -53.70 15 16 Si 0.97 42.32 29.54 68.60 2.03 44.35 15 17 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 18 H -0.28 -12.08 7.11 99.48 0.71 -11.38 15 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 20 C 0.17 3.49 10.78 85.12 0.92 4.40 15 21 N -0.48 -9.78 10.26 -188.22 -1.93 -11.71 15 22 H 0.20 0.31 8.06 -2.91 -0.02 0.29 15 23 H 0.18 1.81 7.73 -2.91 -0.02 1.79 15 24 H 0.06 2.61 8.14 -2.39 -0.02 2.59 15 25 H 0.06 2.60 8.14 -2.39 -0.02 2.59 15 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 15 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 15 28 H 0.27 14.63 8.31 -92.71 -0.77 13.86 15 29 H 0.19 3.81 7.61 -2.91 -0.02 3.79 15 Total: -1.00 -66.26 282.13 6.39 -59.88 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: 1.18 Total: -3.07 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 4.68 Total: 3.13 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -1.29 Total: -74.25 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.21 Total: -30.04 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -66.26 6.39 -59.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734600456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.554 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds