Wall clock time and date at job start Mon Mar 30 2020 03:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48499 * 109.46945 * 240.00241 * 3 2 1 5 5 H 1.48497 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47349 * 119.99690 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.20818 * 120.00197 * 359.72217 * 11 10 9 13 13 O 1.34230 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.45198 * 117.00173 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.52181 * 330.12272 * 14 13 11 16 16 C 1.53177 * 109.52533 * 210.00087 * 14 13 11 17 17 C 1.53172 * 109.03957 * 183.11163 * 16 14 13 18 18 C 1.53094 * 109.16218 * 56.98008 * 17 16 14 19 19 O 1.42904 * 109.41419 * 302.39372 * 18 17 16 20 20 C 1.42906 * 114.09862 * 61.15900 * 19 18 17 21 21 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 23 23 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 24 24 H 1.09000 * 109.54404 * 302.98305 * 16 14 13 25 25 H 1.09009 * 109.54210 * 63.24467 * 16 14 13 26 26 H 1.08994 * 109.52263 * 176.88860 * 17 16 14 27 27 H 1.09003 * 109.52247 * 297.01469 * 17 16 14 28 28 H 1.08994 * 109.47853 * 62.37612 * 18 17 16 29 29 H 1.08996 * 109.48307 * 182.40096 * 18 17 16 30 30 H 1.09003 * 109.47886 * 178.85995 * 20 19 18 31 31 H 1.08994 * 109.48050 * 58.82514 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7959 -5.5015 0.0055 13 8 2.8409 -6.3388 0.0022 14 6 2.2614 -7.6701 0.0023 15 1 1.2991 -7.6484 0.5138 16 6 3.2032 -8.6384 0.7247 17 6 2.6190 -10.0524 0.6507 18 6 2.4086 -10.4330 -0.8172 19 8 1.5485 -9.4752 -1.4377 20 6 2.0649 -8.1427 -1.4405 21 1 -0.4850 0.8400 -0.0004 22 1 3.1240 -3.7309 0.8925 23 1 3.1253 -3.7317 -0.8875 24 1 4.1814 -8.6224 0.2441 25 1 3.3033 -8.3394 1.7682 26 1 3.3097 -10.7566 1.1142 27 1 1.6640 -10.0799 1.1755 28 1 3.3698 -10.4449 -1.3309 29 1 1.9533 -11.4216 -0.8748 30 1 1.3618 -7.4814 -1.9470 31 1 3.0216 -8.1247 -1.9624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761357394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:29 Heat of formation + Delta-G solvation = -143.433882 kcal Electronic energy + Delta-G solvation = -15527.838085 eV Core-core repulsion = 12707.423468 eV Total energy + Delta-G solvation = -2820.414617 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47256 -38.96532 -36.16448 -33.49948 -32.49589 -30.97898 -29.31456 -25.57808 -25.31589 -23.84180 -20.99458 -20.53701 -17.96366 -17.37538 -16.77861 -16.46266 -15.66789 -15.56086 -14.85657 -14.74477 -14.35546 -13.96465 -13.48495 -12.99335 -12.92518 -12.68177 -12.46076 -11.86442 -11.44389 -11.27195 -11.11592 -11.07081 -10.97369 -10.82697 -10.47230 -10.03193 -9.91909 -9.62017 -9.11740 -8.37909 -6.61829 -6.28078 -4.01215 2.54575 2.61205 3.21244 3.21423 3.26401 3.43423 3.74224 4.13938 4.45298 4.54545 4.59633 4.61564 4.94191 5.02410 5.07652 5.18394 5.31968 5.39177 5.47462 5.53753 5.58135 5.68455 5.75120 5.85823 5.94894 6.05594 6.63047 6.93378 7.53995 8.12980 8.29064 9.17163 10.79371 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.070733 B = 0.004158 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.757368 B = 6732.308776 C = 6878.789987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.076 0.924 9 S -0.058 6.058 10 C -0.129 4.129 11 C 0.477 3.523 12 O -0.484 6.484 13 O -0.353 6.353 14 C 0.053 3.947 15 H 0.094 0.906 16 C -0.120 4.120 17 C -0.152 4.152 18 C 0.053 3.947 19 O -0.372 6.372 20 C 0.048 3.952 21 H 0.270 0.730 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -17.483 0.008 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.686 4.686 8 H 0.094 0.906 9 S 0.169 5.831 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.369 6.369 13 O -0.271 6.271 14 C -0.002 4.002 15 H 0.112 0.888 16 C -0.157 4.157 17 C -0.190 4.190 18 C -0.023 4.023 19 O -0.290 6.290 20 C -0.029 4.029 21 H 0.080 0.920 22 H 0.121 0.879 23 H 0.121 0.879 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.979 -17.716 -0.072 18.698 hybrid contribution 2.096 1.314 0.184 2.481 sum 8.075 -16.402 0.113 18.282 Atomic orbital electron populations 1.69997 1.05997 1.27783 1.46445 1.25000 0.95057 0.99101 0.94287 0.86176 0.79207 0.80938 0.78910 1.19828 1.20763 1.19834 1.22805 0.94999 0.91186 1.59601 0.90625 1.85431 1.04265 0.96535 1.96893 1.23306 1.07025 0.90833 1.06482 1.23396 0.85338 0.87241 0.72249 1.90671 1.16862 1.85408 1.43963 1.86579 1.41011 1.14847 1.84660 1.23295 0.98932 0.79924 0.98090 0.88771 1.21686 0.99012 0.93337 1.01682 1.22210 1.02525 0.96198 0.98086 1.22680 0.94873 0.92783 0.92000 1.88014 1.45579 1.16537 1.78911 1.22937 1.00636 0.84083 0.95234 0.91985 0.87897 0.87889 0.90537 0.90349 0.89952 0.90537 0.92841 0.88478 0.87943 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 2 C 0.08 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.53 20.58 -107.50 -2.21 -3.75 16 10 C -0.13 -2.61 6.27 36.01 0.23 -2.39 16 11 C 0.48 9.15 7.95 36.01 0.29 9.44 16 12 O -0.48 -10.65 15.08 -18.74 -0.28 -10.93 16 13 O -0.35 -5.61 9.89 -39.26 -0.39 -6.00 16 14 C 0.05 0.72 2.66 -26.59 -0.07 0.65 16 15 H 0.09 1.44 7.15 -51.93 -0.37 1.06 16 16 C -0.12 -1.20 5.69 -26.55 -0.15 -1.36 16 17 C -0.15 -1.24 6.14 -26.59 -0.16 -1.40 16 18 C 0.05 0.46 6.84 37.21 0.25 0.72 16 19 O -0.37 -4.64 10.77 -35.23 -0.38 -5.02 16 20 C 0.05 0.62 6.49 37.20 0.24 0.86 16 21 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 23 H 0.10 1.93 8.14 -51.92 -0.42 1.50 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 282.11 15.07 4.25 4.25 Total: -1.00 -32.09 282.11 -6.62 -38.71 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.14 Total: -2.09 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 0.82 Total: -6.23 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.73 Total: -25.02 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.05 Total: -21.95 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.09 -6.62 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761357394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.722 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds