Wall clock time and date at job start Mon Mar 30 2020 03:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48499 * 109.46945 * 240.00241 * 3 2 1 5 5 H 1.48497 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47349 * 119.99690 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.20818 * 120.00197 * 359.72217 * 11 10 9 13 13 O 1.34230 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.45198 * 117.00173 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.52181 * 330.12272 * 14 13 11 16 16 C 1.53177 * 109.52533 * 210.00087 * 14 13 11 17 17 C 1.53172 * 109.03957 * 183.11163 * 16 14 13 18 18 C 1.53094 * 109.16218 * 56.98008 * 17 16 14 19 19 O 1.42904 * 109.41419 * 302.39372 * 18 17 16 20 20 C 1.42906 * 114.09862 * 61.15900 * 19 18 17 21 21 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 23 23 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 24 24 H 1.09000 * 109.54404 * 302.98305 * 16 14 13 25 25 H 1.09009 * 109.54210 * 63.24467 * 16 14 13 26 26 H 1.08994 * 109.52263 * 176.88860 * 17 16 14 27 27 H 1.09003 * 109.52247 * 297.01469 * 17 16 14 28 28 H 1.08994 * 109.47853 * 62.37612 * 18 17 16 29 29 H 1.08996 * 109.48307 * 182.40096 * 18 17 16 30 30 H 1.09003 * 109.47886 * 178.85995 * 20 19 18 31 31 H 1.08994 * 109.48050 * 58.82514 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7959 -5.5015 0.0055 13 8 2.8409 -6.3388 0.0022 14 6 2.2614 -7.6701 0.0023 15 1 1.2991 -7.6484 0.5138 16 6 3.2032 -8.6384 0.7247 17 6 2.6190 -10.0524 0.6507 18 6 2.4086 -10.4330 -0.8172 19 8 1.5485 -9.4752 -1.4377 20 6 2.0649 -8.1427 -1.4405 21 1 -0.4850 0.8400 -0.0004 22 1 3.1240 -3.7309 0.8925 23 1 3.1253 -3.7317 -0.8875 24 1 4.1814 -8.6224 0.2441 25 1 3.3033 -8.3394 1.7682 26 1 3.3097 -10.7566 1.1142 27 1 1.6640 -10.0799 1.1755 28 1 3.3698 -10.4449 -1.3309 29 1 1.9533 -11.4216 -0.8748 30 1 1.3618 -7.4814 -1.9470 31 1 3.0216 -8.1247 -1.9624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761357394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:28 Heat of formation + Delta-G solvation = -164.200964 kcal Electronic energy + Delta-G solvation = -15528.738613 eV Core-core repulsion = 12707.423468 eV Total energy + Delta-G solvation = -2821.315145 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.80428 -40.01966 -37.56720 -34.61557 -34.37731 -32.11490 -30.74218 -27.71663 -26.17239 -24.84357 -22.34653 -21.46761 -19.90868 -18.84460 -17.90134 -17.67400 -16.90279 -16.80092 -16.73404 -16.09186 -15.77636 -15.10762 -14.69886 -14.31525 -14.24770 -13.98992 -13.67358 -13.20451 -13.04600 -12.86984 -12.68891 -12.23702 -12.17955 -12.08485 -11.79473 -11.56642 -11.35635 -11.14759 -10.54088 -10.39299 -8.75004 -8.37568 -6.18052 0.97139 1.06914 1.40535 1.45116 1.53915 1.80376 2.23864 2.83196 2.97540 3.25136 3.53231 3.55417 3.67513 3.82289 4.02547 4.12719 4.15896 4.36124 4.41282 4.48827 4.63219 4.66058 4.81211 4.92709 5.03702 5.11418 5.33189 5.40462 6.07392 6.17525 6.63939 7.03923 8.71495 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.070733 B = 0.004158 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.757368 B = 6732.308776 C = 6878.789987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.087 0.913 9 S -0.139 6.139 10 C -0.108 4.108 11 C 0.485 3.515 12 O -0.519 6.519 13 O -0.340 6.340 14 C 0.047 3.953 15 H 0.071 0.929 16 C -0.115 4.115 17 C -0.147 4.147 18 C 0.044 3.956 19 O -0.393 6.393 20 C 0.052 3.948 21 H 0.273 0.727 22 H 0.123 0.877 23 H 0.124 0.876 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 -18.296 0.164 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.698 4.698 8 H 0.105 0.895 9 S 0.088 5.912 10 C -0.256 4.256 11 C 0.328 3.672 12 O -0.407 6.407 13 O -0.258 6.258 14 C -0.009 4.009 15 H 0.089 0.911 16 C -0.153 4.153 17 C -0.184 4.184 18 C -0.032 4.032 19 O -0.312 6.312 20 C -0.025 4.025 21 H 0.082 0.918 22 H 0.141 0.859 23 H 0.142 0.858 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.536 -18.562 0.086 20.431 hybrid contribution 1.338 1.373 0.137 1.922 sum 9.874 -17.190 0.223 19.825 Atomic orbital electron populations 1.70157 1.07987 1.28894 1.47627 1.26124 0.95957 1.03298 0.93456 0.84979 0.77792 0.75503 0.79588 1.18588 1.20393 1.18582 1.23173 0.95557 0.91523 1.59510 0.89479 1.85571 1.09310 0.99172 1.97191 1.23098 1.04251 0.89827 1.08415 1.23112 0.84921 0.87649 0.71526 1.90669 1.18379 1.85922 1.45692 1.86546 1.39976 1.15338 1.83896 1.23630 0.99074 0.79068 0.99121 0.91089 1.21761 0.98810 0.93267 1.01432 1.22225 1.02823 0.95441 0.97938 1.23007 0.95422 0.92595 0.92172 1.87992 1.47095 1.16558 1.79562 1.22804 1.00782 0.84387 0.94526 0.91827 0.85878 0.85818 0.88955 0.90002 0.86749 0.91411 0.91106 0.86506 0.90355 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.02 13.22 21.65 0.29 -54.73 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 1.00 42.76 29.55 68.60 2.03 44.79 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.55 -30.81 9.50 67.96 0.65 -30.16 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 9 S -0.14 -7.58 20.58 -56.49 -1.16 -8.74 16 10 C -0.11 -4.30 6.27 71.24 0.45 -3.85 16 11 C 0.49 18.60 7.95 71.24 0.57 19.17 16 12 O -0.52 -23.51 15.08 21.99 0.33 -23.18 16 13 O -0.34 -10.45 9.89 -51.41 -0.51 -10.96 16 14 C 0.05 1.23 2.66 30.68 0.08 1.31 16 15 H 0.07 2.22 7.15 -2.39 -0.02 2.20 16 16 C -0.12 -2.04 5.69 30.71 0.17 -1.86 16 17 C -0.15 -1.97 6.14 30.68 0.19 -1.78 16 18 C 0.04 0.64 6.84 72.01 0.49 1.13 16 19 O -0.39 -9.39 10.77 -148.98 -1.60 -10.99 16 20 C 0.05 1.31 6.49 72.01 0.47 1.78 16 21 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 22 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 23 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.76 282.11 4.02 -66.74 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.12 Total: 9.93 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 3.53 Total: -12.86 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.29 Total: -54.73 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.78 Total: -45.12 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Total: -70.76 4.02 -66.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761357394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.461 kcal (2) G-P(sol) polarization free energy of solvation -70.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds